NO02G05950, NO02G05950 (gene) Nannochloropsis oceanica

Overview
NameNO02G05950
Unique NameNO02G05950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2328
Alignment locationchr2:1586092..1588419 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1586092..1588419 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008250ATPase_P-typ_transduc_dom_A
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007310NSK007310Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05950.1NO02G05950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05950.1NO02G05950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05950 ID=NO02G05950|Name=NO02G05950|organism=Nannochloropsis oceanica|type=gene|length=2328bp
ACAGAGAGAAAAGCACAAAGATACCACGCTAGGTCAGCAATCGCAGCTAC
GACTATCACCCTGTCAACCAGCAGCCACACCACACCGATCACCTCTGCAC
GCACACAAACAGGAGGGTCTCACGCCATGCCGGTGCTGGACCACTCCTAT
TGGCAATGGCTGAAGCATGCGTTGCCAGTTGCGTGGACTCTTGGGCTCAG
TGCCATTCTTCTTGCAATGTGCCTTCCGGACACCGGTCCCGAGGGCTCGC
CTTTGCTCGTCCTTATGGTGTTGGGCATGGGTCTCGCTCTGTATAGCGCG
GCGGCCTTAGGCTGGCTAATCATCTCTGCAGAAAGCAAGGCGCAAGAGTG
GGGACATGGCTTGACGGAACCGGAACTCGACCTGTTGTACGAGGCGCCTT
CTTTACCTCTAAGGGAAGTGGTGGACATTCTCGGAACAGACTCGACCACT
GGCCTCAGCCACCGTCACGCCCAAGCCCGAGAAACGGAGTCGTCGCAAGA
GGCACGTCGCAAGTCTTCCCCATCACATTGGGCCGTCCATACCCTCTTTC
AGGCATTGCATGAAGAAGTCTGGGGTTCTTCCTCCTGGCCCATCGCCGCC
CTCCTCTCCCTGGCCCTTGTGCAAGCTGCGGTCTTGTCACCTTCTTCGCC
TATCCTCCCCTTGGGACTCACCCTCGTGCTCGTCGTCCTCTCGCTCTCCA
TCCTCCGGCGCTGGCGGGCAGCATGGTGTTTGCGCATGTGCACCCGGGGC
GACACAGGGGCCTTGCCTGCGTTGGGACCGGTGACGGTGGTGCGGCAAGG
GGAAGTGATGCAACTGCCGGTGGAGAGGGTAGTGGTGGGTGACTTATTGC
TTCTCTCCCCGGGCCAGGAATTGTGCGCGGATGTGCGGCTGGTGGAGGTG
GAGGCAGGACCGACGAGGAGGATCAACCTAGAGATGGACGAAAGCGTGTT
GGATGAGCTGAGGCTGAGGCTTTTGGCGTTGGGGATGACGGTGGAGGGAG
GGCCGGTGGCGGGAGGGAGGACCGGGCTGCTGTCCCCTGGCAGGGGCATG
GGAGAAGAGGCGCAACAGCAGGAGCAGGAGCAGCAAGAGCAGCAGGAGCA
GTGGAAGCCGCAGCGACAGGGAATGTTTTCCTTTACTGACGAAGAGGTGC
GTATGCACGGATTGCCTGGTGGCAAACCAACGGCGCCGCGGCCGCAAGGC
TCTCCTCCACCTCATACGGGCCTGCACCATCATGTCTCCTTCTCCCATGG
TACCTTTTCCATGGAGGATAAGGCCGTCACTGCTGCCGCTGCTGCCAACA
CCATCAGCGCCACTGCTCCTGGTGGTCCAAAAGCAGGAGGAGGGGGAGGG
AGCGGGGGATACGATACAAACTCCTTGCTCCCTCTCAACCACCGCCGCCG
CACGTTCATGGGCTTGGCGGGCTCGGTCGTAACGAGGGGCAGAGGGAGGG
GGCTGGTCGTGTCCCTGCCCCCGCATACAGAGAAGGGCCGCCTCACCCGC
CTGCTCAAGCGGGCTGAGTGGGCACGGACGGTGGTGATGGAGCAATTGCA
GGAGGTGGGGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCCGGGGGGTGCCGTGTCTCCTTTGTCTGCGTCGTCGACC
TTTTTCTTTTCCTTTACTCCCTCCACCCTTTCTCCCACTGCTGCACGCAA
CGGTTGCGAAATAAATAAAGGTCGCGGAATAAATAACGCTTCCGGAATAA
ATAACGGCTCCGCAGCCATAGTCACCAGCAGCAGCAACAGCAGCACCCTC
CCCCTCCCCCCTCCTCTCACCCTCCCCCTCCGCCCCCTTCGCACCCGCCG
ACGTTCACGCCCGAGCGACAGTATCCTCCTGCCCTCCACCATCTCCACCC
TTCGGAGAAGCAGCAGCATCGGCGATGGAGCTCCCAACGACAGCGACTCC
ATGTTTTCTCCCATCTCCCTCCCTACAGATGCTCTCACCGTACCCATCGC
ATCCGTTTCCTCCATCTGCTCCTCCCTCGTGTCCTCCTCCCCTCCGGCCG
CATACCATCACTACCCACCCTCTTCTTCACTTCCCTCCCACCACTTGCCC
CCTCCCCTCCACGACTCATCTTTCGTCTCCGCCGCCGTCAAGCTCCCCCC
CTCCCTTCCCCCCTCCCTTCCCCCCTCCCTCCCCTCTCCCTCCCCCCTTC
CTCCTCCCTCCTCCTCCTCGATCCCTCTCTCACCAGCCTGGAAGACGCTC
TTTTGTGGACCGGCGTGGTCGTATCCTTCCTTTCCCTCTTCCTGTTCCGT
GGTGCAAGCGACCCTCTGGTGTGCATGA
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protein sequence of NO02G05950.1

>NO02G05950.1-protein ID=NO02G05950.1-protein|Name=NO02G05950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=734bp
MPVLDHSYWQWLKHALPVAWTLGLSAILLAMCLPDTGPEGSPLLVLMVLG
MGLALYSAAALGWLIISAESKAQEWGHGLTEPELDLLYEAPSLPLREVVD
ILGTDSTTGLSHRHAQARETESSQEARRKSSPSHWAVHTLFQALHEEVWG
SSSWPIAALLSLALVQAAVLSPSSPILPLGLTLVLVVLSLSILRRWRAAW
CLRMCTRGDTGALPALGPVTVVRQGEVMQLPVERVVVGDLLLLSPGQELC
ADVRLVEVEAGPTRRINLEMDESVLDELRLRLLALGMTVEGGPVAGGRTG
LLSPGRGMGEEAQQQEQEQQEQQEQWKPQRQGMFSFTDEEVRMHGLPGGK
PTAPRPQGSPPPHTGLHHHVSFSHGTFSMEDKAVTAAAAANTISATAPGG
PKAGGGGGSGGYDTNSLLPLNHRRRTFMGLAGSVVTRGRGRGLVVSLPPH
TEKGRLTRLLKRAEWARTVVMEQLQEVGVQQQQQQQQQQQQQQQQPGGAV
SPLSASSTFFFSFTPSTLSPTAARNGCEINKGRGINNASGINNGSAAIVT
SSSNSSTLPLPPPLTLPLRPLRTRRRSRPSDSILLPSTISTLRRSSSIGD
GAPNDSDSMFSPISLPTDALTVPIASVSSICSSLVSSSPPAAYHHYPPSS
SLPSHHLPPPLHDSSFVSAAVKLPPSLPPSLPPSLPSPSPLPPPSSSSIP
LSPAWKTLFCGPAWSYPSFPSSCSVVQATLWCA*
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Synonyms
Publications