NO02G05930, NO02G05930 (gene) Nannochloropsis oceanica

Overview
NameNO02G05930
Unique NameNO02G05930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1800
Alignment locationchr2:1582263..1584062 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1582263..1584062 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO02G05930 vs. NCBI_GenBank
Match: EWM30061.1 (hypothetical protein Naga_100170g6 [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.700e-43
Identity = 97/178 (54.49%), Postives = 118/178 (66.29%), Query Frame = 0 
Query:    4 TPQANLSSRIPATRLNNHSYTMGLFDDKGRLLQITWYACMATSIAYVISALVVASRLSKSETPSATDPHAFAAIWSMILLVCILVGGTVVFKRIQTPIATGVLLGCTAMFSQIQLLLFTIFEARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRQYLPTSSSQSSMDSYA 182
            +P   +   +P     + + +M +FDDKGRLL++TWY CMA S+AYVI+ALV+ASRLSKSETP AT P AFAAIWSM++L+ IL+GGT+VF R+QTP+ATGVLLGCTAMFSQI+L+LFTIFEA S                                   WRQYL   SSQSSMDSYA
Sbjct:   16 SPFVTVDKLVPTDFFGSATSSMSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 193
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BLAST of NO02G05930 vs. NCBI_GenBank
Match: XP_005854322.1 (hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526] >XP_005854850.1 hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >EKU21504.1 hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >EKU22037.1 hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 0 
Query:   25 MGLFDDKGRLLQITWYACMATSIAYVISALVVASRLSKSETPSATDPHAFAAIWSMILLVCILVGGTVVFKRIQTPIATGVLLGCTAMFSQIQLLLFTIFEARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRQYLPTSSSQSSMDSYA 182
            M +FDDKGRLL++TWY CMA S+AYVI+ALV+ASRLSKSETP AT P AFAAIWSM++L+ IL+GGT+VF R+QTP+ATGVLLGCTAMFSQI+L+LFTIFEA S                                   WRQYL   SSQSSMDSYA
Sbjct:    1 MSIFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYLHVGSSQSSMDSYA 157
[Close]
BLAST of NO02G05930 vs. NCBI_GenBank
Match: EWM21453.1 (hypothetical protein Naga_100019g4 [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:   29 DDKGRLLQITWYACMATSIAYVISALVVASRLSKSETPSATDPHAFAAIWSMILLVCILVGGTVVFKRIQTPIATGVLLGCTAMFSQIQLLLFTIF 125
            DDK +++   WY     SIAYV+ A+  A+     ET +      FAAIWSM++L  I++GGT+  KR++TPIATGV LG   M+SQ+QLLLF IF
Sbjct:   37 DDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIF 132
The following BLAST results are available for this feature:
BLAST of NO02G05930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30061.11.700e-4354.49hypothetical protein Naga_100170g6 [Nannochloropsi... [more]
XP_005854322.12.500e-4260.51hypothetical protein NGA_0208701 [Nannochloropsis ... [more]
EWM21453.11.200e-1548.96hypothetical protein Naga_100019g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007317NSK007317Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05930.1NO02G05930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575654gene_1184Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100170g6gene587Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05930.1NO02G05930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05930 ID=NO02G05930|Name=NO02G05930|organism=Nannochloropsis oceanica|type=gene|length=1800bp
CCCAAGTCTCCGAAGGCCCATGGACACGACACAGCCGCACTCGGGCGGCA
ACAATAGCGTGGTCACTCCCCGCCAGGAAAAAGATGTCTTGTGATTTAGT
TCACAGTCACATAGGATGTGTGATGTCGGGACACTTCATGTACTGGAGGC
TCCTGAAGCAAGTACCGCGGCCAGCGACCATCATTCATCATCACCAGTAA
AAAGTACAACCCCCCACAATACAAGAATACACTCATGAAGACACCACACC
ACAAATAATGTGCCCCACACCGCAGGCAAATTTATCCTCCCGCATCCCCG
CCACCCGCCTCAACAACCACTCATATACCATGGGTCTTTTCGACGACAAG
GGTCGCCTTCTCCAAATCACATGGTATGCCTGCATGGCAACCTCGATCGC
Ggtaagttatttctagcaatatcgagattcagacacgagagtatgaaatg
tgaaatgtcttggtagaattttgtgaagtgtcgggcgaggatcgctcgcc
gtttaccggtcaagccgtaggaggatgaacaggcgggattgtcagcctac
ccgttcattctccccactaattgcggaaaggatgagaatgcgtgatgcag
gcacatattgactactcataatgtctctatttctcatcccttccataaca
gTACGTAATTTCAGCCCTGGTCGTTGCGTCCCGCCTCTCGAAGAGCGAGA
CCCCTAGTGCGACGGACCCTCATGCGTTTGCGGCCATTTGGTCCATGATC
CTGTTGGTGTGCATCCTCGTCGGCGGCACGGTCGTCTTCAAGAGgtatgc
aaggtagcatttgccacgggtagagaggggcaaaggacgacggggattgt
cttgaggctgatgacgatgatagcgctcgtgccatggcacggcagcttcc
ccggtctttcattccatcgcgtgtgcacatccatccaccaccacaccctt
ccccgtctcttggctttgactcttttccctgttttccagGATCCAGACCC
CCATCGCCACGGGTGTACTGTTGGGTTGCACGGCCATGTTCTCGCAGATT
CAGCTGCTTCTCTTCACCATCTTCGAGGCTCGCAGgtagagagggcgggg
gggaaggacgaggaggtggaaaaacgagatgtgccgggatacttctttgc
atggacggatcctcgccgccctcttcttttcccaaaatgtgttggtcttt
caacgagtgtgctatttttctccatcctcgtttcatgtcatatctccctc
ctccccctcctccccctcctccccgctgtagCCGCCAAGCCGAGTCGGCG
AGCGAGAAGAGCGCAGACGGGGCCATCGCGACCTTTGCTTTTTTCCTCTT
CCTCATTTTTGGCATCTTTTCCCTCTTCCTTTTTATGTGGAGGCAGTACC
TACCGgtgcgtgctgctgcagggagggagggagagagggagggatgtggc
ctacagattccgacatgtagattttttcgtcgctcatccttctcttcgtt
ctttttccctcctcccttcttcctcattgattgcagACTAGCTCGAGCCA
GTCATCCATGGACAGCTACGCCTAAACGGAAGCAGAATAATGTGAGTAAT
AATATGTAATACGAGTAAAGTATACAGCAGCATCCACTCGTGAAAGGAAG
CAGAAAGCATGCGCTGATTCAGACGAGCTGCATGGGGATGGATGACTTGT
GTGGGGTGTTGGTGCGAGGAAGGGCAAGTGGGAAAAAGAGAGAAAGGAGG
GTGCCATGGGAGGGGGAACTAAGATCCGCAGCGAGAGGGGGGGGGGGGGG
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protein sequence of NO02G05930.1

>NO02G05930.1-protein ID=NO02G05930.1-protein|Name=NO02G05930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MCPTPQANLSSRIPATRLNNHSYTMGLFDDKGRLLQITWYACMATSIAYV
ISALVVASRLSKSETPSATDPHAFAAIWSMILLVCILVGGTVVFKRIQTP
IATGVLLGCTAMFSQIQLLLFTIFEARSRQAESASEKSADGAIATFAFFL
FLIFGIFSLFLFMWRQYLPTSSSQSSMDSYA*
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Synonyms
Publications