NO02G05900, NO02G05900 (gene) Nannochloropsis oceanica

Overview
NameNO02G05900
Unique NameNO02G05900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1390
Alignment locationchr2:1573800..1575189 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1573800..1575189 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR019363DUF2305
Homology
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BLAST of NO02G05900 vs. NCBI_GenBank
Match: EWM30064.1 (Protein of unknown function DUF2305 [Nannochloropsis gaditana])

HSP 1 Score: 483.8 bits (1244), Expect = 4.100e-133
Identity = 230/293 (78.50%), Postives = 254/293 (86.69%), Query Frame = 0 
Query:   26 DPNAPPDQPSVQIYFFSGNPYVYALYDNLLSLLQTRGQTKGHRISTLLVTYPPLPDALLADPQAAFAHIASDVQQQIWTYERARPSPSPSHTLLVGHSFGAYIANLLLPHLTPSPAASIYLFPFLSEPTWRGKLQLALADQAYRQTPLLGRALHGMTTRLFDWLLYFVSSPAKRRNLPPRTDPATLHAILRVAACERAEIGGKGPDLSHVDMHGEKHGSKPYLVYTEGDEWSPRYVWDAWPEERRVDMSHIPHAFPCQEAHDEEVCETVLDIVGRVVRGEESEGGVKE-RAKL 318
            +P +  +  SV IYFFSGNPYVYALYDNLLSLL+ RG  KGHRISTLLVTYP LPD  LADPQAAFA+IA DV QQIW +ERAR SPSP+HT+LVGHSFGAYIANLLLPHLTP P ASIYLFPFLSEP+WRGKLQLALADQAYR+TP LG ALHG+T+RLFDW+L F+SSP KR++L     P TL AILRVAACERAEIGGKGPDLSHVDMHGE+HGS PYLVYTEGDEWSPRYVWDAWPEERRVDMSH+PHAFPC EAHDEEVC+TVL IVG+VV G E +  + + RA+L
Sbjct:   25 EPKSTAEDHSVHIYFFSGNPYVYALYDNLLSLLRIRGHAKGHRISTLLVTYPSLPDFFLADPQAAFAYIAKDVHQQIWAHERARHSPSPTHTILVGHSFGAYIANLLLPHLTPVPIASIYLFPFLSEPSWRGKLQLALADQAYRRTPFLGSALHGVTSRLFDWVLRFISSPFKRQSLGGGIGPETLRAILRVAACERAEIGGKGPDLSHVDMHGERHGSMPYLVYTEGDEWSPRYVWDAWPEERRVDMSHVPHAFPCHEAHDEEVCQTVLQIVGKVVGGHEGKEALTDTRARL 317
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BLAST of NO02G05900 vs. NCBI_GenBank
Match: XP_005854853.1 (hypothetical protein NGA_0419200 [Nannochloropsis gaditana CCMP526] >EKU21507.1 hypothetical protein NGA_0419200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 483.4 bits (1243), Expect = 5.300e-133
Identity = 232/295 (78.64%), Postives = 255/295 (86.44%), Query Frame = 0 
Query:   24 TIDPNAPPDQPSVQIYFFSGNPYVYALYDNLLSLLQTRGQTKGHRISTLLVTYPPLPDALLADPQAAFAHIASDVQQQIWTYERARPSPSPSHTLLVGHSFGAYIANLLLPHLTPSPAASIYLFPFLSEPTWRGKLQLALADQAYRQTPLLGRALHGMTTRLFDWLLYFVSSPAKRRNLPPRTDPATLHAILRVAACERAEIGGKGPDLSHVDMHGEKHGSKPYLVYTEGDEWSPRYVWDAWPEERRVDMSHIPHAFPCQEAHDEEVCETVLDIVGRVVRGEESEGGVKE-RAKL 318
            T +P +  +  SVQIYFFSGNPYVYALYDNLLSLL+ RG  KG RISTLLVTYP LPD  LADPQAAFA+IA DV QQIW +ERAR SPSP+HTLLVGHSFGAYIANLLLPHLTP P ASIYLFPFLSEP+WRGKLQLALADQAYR+TP LG A+HG+T+ LFDW+L F+SSP KR++L    DP TL AILRVAACERAEIGGKGPDLSHVDMHGE+HGS PYLVYTEGDEWSPRYVWDAWPEERRVDMSH+PHAFPC EAHDEEVCETVL IVG+VV G E +  + + RA+L
Sbjct:   23 TGEPKSTAEDHSVQIYFFSGNPYVYALYDNLLSLLRIRGHAKGRRISTLLVTYPSLPDFFLADPQAAFAYIAKDVHQQIWAHERARHSPSPTHTLLVGHSFGAYIANLLLPHLTPVPIASIYLFPFLSEPSWRGKLQLALADQAYRRTPFLGSAVHGVTSCLFDWVLRFISSPFKRQSLGGGIDPETLRAILRVAACERAEIGGKGPDLSHVDMHGERHGSMPYLVYTEGDEWSPRYVWDAWPEERRVDMSHVPHAFPCHEAHDEEVCETVLQIVGKVVGGHEGKEALTDTRARL 317
The following BLAST results are available for this feature:
BLAST of NO02G05900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30064.14.100e-13378.50Protein of unknown function DUF2305 [Nannochlorops... [more]
XP_005854853.15.300e-13378.64hypothetical protein NGA_0419200 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007321NSK007321Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05900.1NO02G05900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575644gene_1181Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100170g3gene590Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05900.1NO02G05900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05900 ID=NO02G05900|Name=NO02G05900|organism=Nannochloropsis oceanica|type=gene|length=1390bp
ATGTCGCGACAGCAGCAGGAACAGCTGCAAGACCACCACCACCACCGCCA
TCATCACCCCGCGGCGCACACGATCGACCCCAACGCACCTCCGGACCAAC
CCAGCGTCCAGATATACTTCTTCTCCGGGAACCCATgtaagagatatgga
tagaggagggagaatggcatggatgaagaggaaattgtatgccttctagc
caatatacagaggcacttgtctgtcattctctttctcacacgcccctccc
ttccctccccaccgatctccccgtcataccgcgctcccgattcccctccc
gccctttcccacacggactcagACGTGTACGCACTGTACGACAACCTTCT
GTCCCTCCTTCAAACCCGAGGACAAACCAAAGGTCATCGCATCTCCACCC
TCCTCGTCACCTACCCCCCACTCCCCGACGCCCTGCTTGCCGATCCCCAA
GCCGCCTTTGCACACATCGCCAGCGACGTACAGCAGCAAATCTGGACCTA
CGAACGCGCGCGTCCCTCTCCCTCACCTTCTCACACCCTCTTGGTCGGGC
ACTCTTTCGGGGCCTACATCGCCAACCTCCTCCTCCCCCACCTGACGCCG
TCCCCCGCCGCCTCCATCTACCTCTTCCCCTTCCTCTCCGAACCGACCTG
GCGAGGCAAACTTCAACTTGCGCTCGCGGATCAGGCCTACCGCCAAACGC
CCCTCCTAGGCCGGGCCCTTCATGGGATGACCACTCGGCTCTTCGATTGG
CTCCTTTACTTCGTTTCCTCCCCAGCCAAGCGGCGTAACCTCCCCCCACG
CACGGACCCAGCCACGCTCCACGCCATCTTGCGGGTCGCGGCGTGTGAGC
GGGCGGAAATTGGGGGAAAAGGGCCGGACTTATCGCATGTCGACATGCAC
GGGGAGAAGCACGGGAGCAAGCCGTATTTGGTGTACACGGAGGGGGACGA
GTGGAGgtgggtgtgggagggagggaggaagggatggagggagggaggga
gggaggaaggggtatgtagacccgggtcaatgaggcgtagttctgcagga
gacaggtgaacagtctttccttcaacatcttccccccgtgtcttattgcc
tcccgccggggcaggtaacatcgctcgttctccttgcattgccttgtcct
ccatgccacactcactcacctatattaccggctgaccgcccccccccccc
ccacagCCCGAGATACGTCTGGGACGCCTGGCCGGAGGAAAGGAGGGTGG
ATATGAGTCACATCCCTCATGCCTTCCCGTGCCAGGAGGCGCACGACGAG
GAGGTGTGTGAAACCGTGCTGGACATCGTGGGGAGGGTGGTGAGGGGGGA
GGAGAGTGAAGGCGGCGTGAAGGAGAGGGCCAAGTTGTAG
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protein sequence of NO02G05900.1

>NO02G05900.1-protein ID=NO02G05900.1-protein|Name=NO02G05900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MSRQQQEQLQDHHHHRHHHPAAHTIDPNAPPDQPSVQIYFFSGNPYVYAL
YDNLLSLLQTRGQTKGHRISTLLVTYPPLPDALLADPQAAFAHIASDVQQ
QIWTYERARPSPSPSHTLLVGHSFGAYIANLLLPHLTPSPAASIYLFPFL
SEPTWRGKLQLALADQAYRQTPLLGRALHGMTTRLFDWLLYFVSSPAKRR
NLPPRTDPATLHAILRVAACERAEIGGKGPDLSHVDMHGEKHGSKPYLVY
TEGDEWSPRYVWDAWPEERRVDMSHIPHAFPCQEAHDEEVCETVLDIVGR
VVRGEESEGGVKERAKL*
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Synonyms
Publications