NO02G05860, NO02G05860 (gene) Nannochloropsis oceanica

Overview
NameNO02G05860
Unique NameNO02G05860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2816
Alignment locationchr2:1562852..1565667 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1562852..1565667 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR031112AP2-like_transcript_factor
IPR001471AP2/ERF_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
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BLAST of NO02G05860 vs. NCBI_GenBank
Match: OMO56628.1 (hypothetical protein CCACVL1_26406 [Corchorus capsularis])

HSP 1 Score: 67.4 bits (163), Expect = 2.600e-7
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0 
Query:  370 SKMSMYKGVCYIKAREKWEVHIYQHGKKKHIGYYDLEVDAAKAYDAAVIKKCGKRAVTNFD 431
            S+ S Y+GV + +   +WE HI+  GK+ ++G +D E++AA+AYD A IK  GK AVTNFD
Sbjct:  155 SRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGLFDTEIEAARAYDRAAIKCNGKDAVTNFD 215
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BLAST of NO02G05860 vs. NCBI_GenBank
Match: XP_005650330.1 (hypothetical protein COCSUDRAFT_64835 [Coccomyxa subellipsoidea C-169] >EIE25786.1 hypothetical protein COCSUDRAFT_64835 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 65.9 bits (159), Expect = 7.600e-7
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 0 
Query:  364 GGSMRHSKMSMYKGVCYIKAREKWEVHIYQHGKKKHIGYYDLEVDAAKAYDAAVIKKCGKRAVTNF 430
            GGS    K S YKGV + K  +KW  +I   GK + +GY+DL+ DAA+AYDA   K  GK+AV NF
Sbjct:  551 GGSADAPKSSAYKGVSWHKHSQKWYAYIQAAGKMRGLGYFDLQEDAARAYDAEARKVHGKKAVVNF 616
The following BLAST results are available for this feature:
BLAST of NO02G05860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200240026002800SequenceOMO56628.1XP_005650330.1
Match NameE-valueIdentityDescription
OMO56628.12.600e-749.18hypothetical protein CCACVL1_26406 [Corchorus caps... [more]
XP_005650330.17.600e-750.00hypothetical protein COCSUDRAFT_64835 [Coccomyxa s... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05860.1NO02G05860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|154858gene_1177Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05860.1NO02G05860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05860 ID=NO02G05860|Name=NO02G05860|organism=Nannochloropsis oceanica|type=gene|length=2816bp
ACAGCCCGGCCAAAGACATGGATCTGGTCTCGCAGCAGCCACCGCGACCG
CCCCCAGAGGATCCGCCGCAGGCACAGGCACACCAGCAGCAGCAGCAACA
GCAACAGCAACATGAGCAGCCGACGCAGGATGCAGGAAAAGATCAGCAGC
AGCCAGTCCCTCCTGGCTTGACACCCCCTCCCGTCCGTTTGTCTGCGCCT
CCGCATGTGATGCCCCTCAAGTTCCCACCCCGCTTCCGGGCAGATAAGAC
GCCCCTTCTGCAGACGGTGCCCGCCACAACGAGTGTCGTGCCTGGGAAAA
GTCCGAGTAACTTTGTCACAAGCAGCAGCAGCACGTGCATGTCCGGGTTG
GCATCTACCGCAACGCTACACGAGCCCTCGAGAGATACGGAGGGTTTGAC
CTCGTCATCGAAGATGAAAGATGACGCAGCACAAACCGCAGGCAAGCTCG
CATCCCTCCCTGTGACGGTGGACACTGATGCTGCCACGGCTATCGACACC
GGCATAGCCACTCCCTCCACCTCCACAACCTCACTCGCTTCCTCGCCCTT
CTTTCATCATCTGTCTCCGAGAACTGTAGATCCGGATCTCTCTGGGGATG
CTGAGGGACAAAAGGAACAGCAGCATCAACTCCCGCAGCACCAGCAACAG
CAGCAGCAGCAGCACCCGCAGCAGCAGCAGCACCCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAAGGACAGCGGGAGGATGATGATTTGG
ACGAGGACATTGACGACGACGCATTGGACGAGAGGGACAACCAGACTGAT
GACGAGGAGGAGGAAGACAGGTATCAAAGGGAGCAGAACGCAGGTACCTA
TCCCCTTCAACGGCAGCAGCAGCACCAGCATCAACAGTATCAGGGAGGAG
GAAATGGAGGCGGCGGTGGCGAAGGAGGAGGAGATGGCGGAAGGTCCGCC
TTAACAATGATGCCAAGGACGTCTTCCACCTCGGTCTTTTCCCCCTCTTC
ATCGCAACAGGAGCAGTCTCAAGAATCGCACTATTCCTCCTCCTCCTCCA
TCTCCTCCATCCAACCCAAGGGCACCACGGGCGCACCAATCAATCGAAAC
ATCGGAGGAGGCAGCATGCGGCATAGTAAGATGAGTATGTATAAAGGCGT
GTGCTACATAAAAGCCCGTGAAAAATGGGAGGTGCATATATACCAGCATG
GGAAGAAGAAGCACATCGGGTATTATGACTTGGAGGTTGATGCGGCCAAA
GCCTACGATGCGGCGGTGATTAAAAAGTGCGGGAAACGGGCAGTTACCAA
CTTCGACCAGgtacggccaaagcgtttagacctgctcgatccctaatctt
gtgggaggtttacttaccgtgtgttttccctctttttgattgtacaaaca
cagGTTACGGGAGAATTCAATCCGGAGGCCAAGACGACCCTGCAAGCGGC
GGCCTTGGAGCCGGGGGGAGGAGGGGGGGAGGAGACAAAGAGTGAGGCGT
CTTCGATGTCAACAGTAGCAGAAGAAGGAAGAGGAGTGGCAGGAGGAGGG
GGAGGAGGAAGAGGAGGAGGAGGGAACGCAATGACGTCATTCGACCACCA
CAAGCAGCGGTATCAGCAGCAGTTGCAGCAGCTTTACCGCAACCCACGTC
CGCAGCTGCAGCAAGAGAAGCAAGCGCACCAAGATGAAACCCCGCCCTCG
GCCTCCAGGGAGGCTGGCACGGCAAAGGGTGCAACCAGTAGAGGCTGGCT
TTCTTCCTCCGCCTCCTCCTCCTCTCTTTCTTCTCACCCGGGCCCCTATC
CTTCCCCGTCACCTCATCCGCGTGGTGTCGAGTCACAATATCGCTCACCC
CAGGCCCAGCAACAGCGGCAGCTACAGCAGCACCAGCAGCAGCAACAACA
ACAGCAGCAGCAGCAGCAGCAGCACCAGGACCAGCAGCAACAACAACAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAG
CAGCAACAGCAACAGCAGCAGCACCGGTTAGGTGCTCTGAATGATTCTGC
GCTCAGCAGGGAAGGAAGAGAAGGGGAGGGGGGCCAGAACCAGTCCCGTC
GCCCGATCTCCTCGTCTGTCCCTTCTTCGATTGCGAGGATGCGGCCGTCT
TTGTCACCTGAAGAAATAAGAGGCAGTGAGGTTGATGGTGATTATGGAGA
AGGAGGAGGAGTAGAGGTGGAACTGCAGCGACTGCATGACATTGATGAGA
AACGTGCTCGTCTTCACGAAAGAGAACAAGAAGAAGGAGTGGAAGTTCAA
GGAGGAGAGCCGCGGTCGTCTCTGTCCGCCTACATGCCTCTTTCGATCTC
CTCCTCCTATCGTACCCGGATTAACAATAGTAGCAACAGCAATAACAGCA
AACGGCTTGGTGTTTTGGGCCGAAGCCACGTTGATGTCAGTCAGCCGAGC
CATATATCGTATGTGCCTGTGCGAGGAGGAGAAGAAGGAGGAGATAAGGA
GGATGAAGAAGATGGGGAGACGATTTCGACTTTGTTGTTGCAGGTGACCT
CGTATTTGATGCGGGAGAGTCGTTGGCTTCAACAGGCAAAGAAACAGAGA
GGAGGGATTATCGGAGAAAGAGCTGGCCGAGGGTCAGAAGGAGGAAAAAG
AAGAAGAAAATGTGGTGAGCAGCTGGGGCGACTACCTAAGAGGAGACTGA
CCGAGCAGGCGGCAAGTGAGGCGCAGGAGGAGGAGGAAAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGAATAAGGAGGAGAGGGGGGGGGGAGGGGGAAA
GAGAAAAGAACAGTGA
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protein sequence of NO02G05860.1

>NO02G05860.1-protein ID=NO02G05860.1-protein|Name=NO02G05860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=902bp
MDLVSQQPPRPPPEDPPQAQAHQQQQQQQQQHEQPTQDAGKDQQQPVPPG
LTPPPVRLSAPPHVMPLKFPPRFRADKTPLLQTVPATTSVVPGKSPSNFV
TSSSSTCMSGLASTATLHEPSRDTEGLTSSSKMKDDAAQTAGKLASLPVT
VDTDAATAIDTGIATPSTSTTSLASSPFFHHLSPRTVDPDLSGDAEGQKE
QQHQLPQHQQQQQQQHPQQQQHPQQQQQQQQQQQQQGQREDDDLDEDIDD
DALDERDNQTDDEEEEDRYQREQNAGTYPLQRQQQHQHQQYQGGGNGGGG
GEGGGDGGRSALTMMPRTSSTSVFSPSSSQQEQSQESHYSSSSSISSIQP
KGTTGAPINRNIGGGSMRHSKMSMYKGVCYIKAREKWEVHIYQHGKKKHI
GYYDLEVDAAKAYDAAVIKKCGKRAVTNFDQVTGEFNPEAKTTLQAAALE
PGGGGGEETKSEASSMSTVAEEGRGVAGGGGGGRGGGGNAMTSFDHHKQR
YQQQLQQLYRNPRPQLQQEKQAHQDETPPSASREAGTAKGATSRGWLSSS
ASSSSLSSHPGPYPSPSPHPRGVESQYRSPQAQQQRQLQQHQQQQQQQQQ
QQQQHQDQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHRLGALNDSALSR
EGREGEGGQNQSRRPISSSVPSSIARMRPSLSPEEIRGSEVDGDYGEGGG
VEVELQRLHDIDEKRARLHEREQEEGVEVQGGEPRSSLSAYMPLSISSSY
RTRINNSSNSNNSKRLGVLGRSHVDVSQPSHISYVPVRGGEEGGDKEDEE
DGETISTLLLQVTSYLMRESRWLQQAKKQRGGIIGERAGRGSEGGKRRRK
CGEQLGRLPKRRLTEQAASEAQEEEEKEEEEEEEEENKEERGGGGGKRKE
Q*
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Synonyms
Publications