NO02G05810, NO02G05810 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G05810 vs. NCBI_GenBank
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana]) HSP 1 Score: 115.2 bits (287), Expect = 1.400e-21 Identity = 81/201 (40.30%), Postives = 110/201 (54.73%), Query Frame = 0 Query: 222 SSGACKPEDGLALRSAIE--AKCMYIRLVPGATYVL----TTTSINITYPVAIVGDIWDRPTLDGRKTPRIFNVLPGGFLDLQFVRVHRGVVRSLLDKNLAVVIGGTALVYLGGGSNYLGVLFI-APSMAW----FARDIKGAV-MFGGHILNMGGLVTLTDCHFFNLSP-TSIRVATAVGGDVLTVIGVTVASGCTHTQA 410 S AC P+ G+ LR E ++C I L+PG Y + + I I+ I+G+ PT+DG + RIF+++ GG LDLQFVR +RG L + V+ GGTALV LGG + GV+F AP + A D+ AV +FGG + GG+VT+T HF+ L P R VG D+L V GV V SG T T + Sbjct: 148 SGSACVPQSGMELRQMAEDPSRCAIISLLPGKIYNVALPDSDDDITISTRKVIIGNPISLPTIDGADSKRIFHIVAGGNLDLQFVRTYRG--GGELIATIPVLRGGTALVELGGRFSAFGVIFTNAPPVGMPAILIAPDVSRAVRVFGGQVFVTGGIVTITLSHFWVLQPGVLFREIYVVGADLLVVAGVAVLSGVTFTNS 346
BLAST of NO02G05810 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana]) HSP 1 Score: 84.3 bits (207), Expect = 2.600e-12 Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 0 Query: 226 CKPEDGLALRSAIE-AKCMYIRLVPGATYVLTTTSINITYPVAIVGDIWDRPTLDGRKTPRIFNVLPGGFLDLQFVRVHRGVVRSLLDKNLAVVIGGTALVYLGGGSNYLGVLFIA----PSMAWFARDIK-GAVMFGGHILNMGGLVTLTDCHFFNLSP-TSIRVATAVGGDVLTVIGVTVASGCTHT 408 C P+ G+ LRS +E C I L PG YVL I++ V I+G P +D R F+V G LDL+FV+V RGV +++D+ + GG A + GG + G L + A D++ A ++GG +L G + + DCH P +R VGG +L V G +G T T Sbjct: 188 CTPDTGVQLRSLVETGSCPVITLTPGVRYVL-DEEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLRVTARLYGGFLLLEAGTLRVRDCHMLLQRPGVLLREVYTVGGYILVVSGNLFMTGSTMT 375
BLAST of NO02G05810 vs. NCBI_GenBank
Match: EWM26075.1 (hypothetical protein Naga_100278g5 [Nannochloropsis gaditana]) HSP 1 Score: 78.6 bits (192), Expect = 1.400e-10 Identity = 72/250 (28.80%), Postives = 106/250 (42.40%), Query Frame = 0 Query: 225 ACKPEDGLALRSAI-EAKCMYIRLVPGATYV-LTTTSINITYPVAIVGDIWDRPTLDG---RKTPRIFNVLPGGFLDLQFVRVHRGVVRS--------------------------LLDKNLAVVIGGTALVYLGGGSNYLGVLFIAPSMAWFARDIKGAVM----------FGGHILNMGGLVTLTDCHFFN---LSPTSIRVATAVGGDVLTVIGVTVASGCTHTQAAFAVAGLGVAGLFHAVLGGVG 431 AC P+ L A+ E C + L L T I + P+ IVG P +D PR F V+ GGFLDLQ++RV GV + + K L G A+ G+N+ GV+F++ + +W ++ A+ +GGHI GG V T+CHF+ L P + + ++GGD+L + G + CT T L AG+ +LGGVG Sbjct: 3 ACYPQTADELVEAVQELDCSLLFLTNSDPQAYLITQHIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSW--ESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLPLTDQF--SLGGDILMLAGTLTVTACTFTSTTM-FGSLAGAGMVVGILGGVG 247
BLAST of NO02G05810 vs. NCBI_GenBank
Match: XP_005854372.1 (hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526] >EKU21987.1 hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 78.2 bits (191), Expect = 1.900e-10 Identity = 74/252 (29.37%), Postives = 108/252 (42.86%), Query Frame = 0 Query: 225 ACKPEDGLALRSAI-EAKCMYIRLV---PGATYVLTTTSINITYPVAIVGDIWDRPTLDG---RKTPRIFNVLPGGFLDLQFVRVHRGVVRS--------------------------LLDKNLAVVIGGTALVYLGGGSNYLGVLFIAPSMAWFARDIKGAVM----------FGGHILNMGGLVTLTDCHFFN---LSPTSIRVATAVGGDVLTVIGVTVASGCTHTQAAFAVAGLGVAGLFHAVLGGVG 431 AC P+ L A+ E C + L P A L T I + P+ IVG P +D PR F V+ GGFLDLQ++RV GV + + K L G A+ G+N+ GV+F++ + +W ++ A+ +GGHI GG V T+CHF+ L P + + ++GGD+L + G + CT T L AG+ +LGGVG Sbjct: 138 ACYPQTADELVEAVQELDCSLLFLTNFDPQA--YLITQHIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSW--ESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLPLTDQF--SLGGDILMLAGTLTVTACTFTSTTM-FGSLAGAGMVVGILGGVG 382
BLAST of NO02G05810 vs. NCBI_GenBank
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana]) HSP 1 Score: 77.0 bits (188), Expect = 4.100e-10 Identity = 61/219 (27.85%), Postives = 104/219 (47.49%), Query Frame = 0 Query: 215 SDIVTRASSGACKPEDGLALRSAI-EAKCMYIRLV---PGATYVLTTTSINITYPVAIVGDIWDRPTLDGRKTPRIFNVLPGGFLDLQFVRVHRGV----------VRSLLDKNLAVVIGGTALVYLGG-GSNYLGVLFIA--------PSMAWFARDIKGAVMFGGHILNMGGLVTLTDCHFFN---LSPTSIRVATAVGGDVLTVIGVTVASGCTHT 408 +D+ C P + + L+ A+ EA C + L P A ++ I + V ++G PT+D R F ++ GGFL+LQ+VRV +G+ R + + + GG+ ++ G G+N++GV+F+A D+ G ++GGH+ G V +CHF++ L P + +V A+G D+L + G +GCT T Sbjct: 193 TDLSKFVGKDTCWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGMGMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMTNQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHFWDSMILMPFTDQV--AIGADILVLAGNVFVTGCTFT 409
BLAST of NO02G05810 vs. NCBI_GenBank
Match: EWM22289.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana]) HSP 1 Score: 67.8 bits (164), Expect = 2.500e-7 Identity = 60/199 (30.15%), Postives = 88/199 (44.22%), Query Frame = 0 Query: 226 CKPEDGLALRSAIE-AKCMYIRLVPGATYVLTTTSINITYPVAIVGDIWDRPTLDGRKTPRIFNVLPGGFLDLQFVRVHRGVVRSLLDKNLAVVIGGTALVYLGGGSNYLGVLFIA--PSMAWF---ARDIKGAVMFGGHILNMGGLVTLTDCHFFN-LSPTSIRVATAVGGDVLTVIGVTVASGCTHTQAAFAVAGLG 418 C P++ LR I+ C + LVP Y +T + I V +VG P +D T R F V GGFLD++FV + +G ++ L + G T + GG + + G F A + A F +FGG I+ G + +TDCH F + R VGG+ L + G +GC A + LG Sbjct: 9 CTPKNAEELRYMIDHTTCPRLTLVPATNYSITEQLV-IRRRVTLVGRPLGLPIIDAHNTTRAFLVEAGGFLDVRFVEIVKGKFVEVVPLVLYRLRGPTCYIRRGGVALFTGCRFSANWRNAALFLGITPPQTNVQVFGGGIVAESGTLRVTDCHVFRPRIGIAFREIQFVGGEFLVLGGNMYLTGCIFVNMAIFASSLG 206 The following BLAST results are available for this feature:
BLAST of NO02G05810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G05810 ID=NO02G05810|Name=NO02G05810|organism=Nannochloropsis oceanica|type=gene|length=3824bpback to top protein sequence of NO02G05810.1 >NO02G05810.1-protein ID=NO02G05810.1-protein|Name=NO02G05810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1135bpback to top Synonyms
Publications
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