NO02G05730, NO02G05730 (gene) Nannochloropsis oceanica

Overview
NameNO02G05730
Unique NameNO02G05730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3912
Alignment locationchr2:1525651..1529562 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1525651..1529562 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009410response to xenobiotic stimulus
GO:0006805xenobiotic metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO02G05730 vs. NCBI_GenBank
Match: XP_005855635.1 (hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526] >EKU20724.1 hypothetical protein NGA_0674310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 374.4 bits (960), Expect = 8.600e-100
Identity = 224/426 (52.58%), Postives = 272/426 (63.85%), Query Frame = 0 
Query:    1 MAPSRVSKNTCTACRSAK-----IRCDRAEPSCDR---CTKLGITCIEQVRTQGRPRKAPISPMPTESIPCETAPMACDLGSLSPPLQGAGVPTAHINCHIIRSSEIPPSGCCS--ERCTGG------TSTLASIGSTAKSFRRPRSADYPVSSLATDLSHGFANFHNRGQTCKEKTIAVLRAWGLVSGTHRQDSSHGAFNQIVRTLALDHGTAIRVQQRPPPTRDVPAGTPLYGPVILHSSXXXXXXXXXXXXXXXVLHAGFRDVDFASVEKAVAFYIIEGGHVQVGVNPLFHSTHMTVPQALALLSHHKMLPVLLWGALFTPASQRKFYGRLSQAIFTAATPVGEMTMDVECVGRHEEEAFWGRATVRHVVEDEGAYASCIISIEPLGVDDARLPPSPAAMTAFPIVGKNKRSSAIAAREGPGE 411
            M  +RVSKNTCTACRSAK         R   S +R   CTKLGI CIEQVRTQGRPRK             +   +  ++   S P  GA  P    + H   SSE   S   S     T G       +T A++     +  R R A+YPVS+LATDLSHGFA+ H RGQ+  EKTIAVLRAW L+SGTHRQDSS+GAFNQ+VR LALDH TAI VQQRPP  RD+P GTPLYGP+   S                +LH GFR  + +   KAVA+Y++EGGHV++ VNPLF S  M++  AL+LL HH+MLP+ LWG LFTP SQRK YGRLSQAIF+AA+PVGE+TMD+EC+GR + E FWGR +VRHVVEDEGAYASCIISIE L VD+   P       A P++ +N+RSS + + +   E
Sbjct:    1 MVATRVSKNTCTACRSAKELNLIWASRRMFLSVERVVLCTKLGIACIEQVRTQGRPRKT------------QALTLLNEIYESSNPHNGAPNPPCPSSLHACGSSESGSSATQSIENSSTDGKTPGFLLATDAAVNPVGAAPGRLRLAEYPVSTLATDLSHGFASLHYRGQSDTEKTIAVLRAWNLMSGTHRQDSSYGAFNQVVRALALDHVTAILVQQRPPNCRDMPPGTPLYGPMSEVSD---------DSDPSDLLHEGFRGFE-SGEGKAVAYYVMEGGHVRLSVNPLFESMLMSMTDALSLLEHHRMLPIFLWGCLFTPFSQRKLYGRLSQAIFSAASPVGEVTMDLECLGR-KGEPFWGRTSVRHVVEDEGAYASCIISIELLRVDEI-CPSYSPLHAARPVMDRNRRSSNVNSEKDVSE 402
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BLAST of NO02G05730 vs. NCBI_GenBank
Match: XP_005855636.1 (hypothetical protein NGA_0674320, partial [Nannochloropsis gaditana CCMP526] >EKU20725.1 hypothetical protein NGA_0674320, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.8 bits (634), Expect = 5.500e-62
Identity = 129/215 (60.00%), Postives = 157/215 (73.02%), Query Frame = 0 
Query:  114 STLASIGSTAKSFRRPRSADYPVSSLATDLSHGFANFHNRGQTCKEKTIAVLRAWGLVSGTHRQDSSHGAFNQIVRTLALDHGTAIRVQQRPPPTRDVPAGTPLYGPVILHSSXXXXXXXXXXXXXXXVLHAGFRDVDFASVEKAVAFYIIEGGHVQVGVNPLFHSTHMTVPQALALLSHHKMLPVLLWGALFTPASQRKFYGRLSQAIFTAATP 329
            +T A++     +  R R A+YPVS+LATDLSHGFA+ H RGQ+  EKTIAVLRAW L+SGTHRQDSS+GAFNQ+VR LALDH TAI VQQRPP  RD+P GTPLYGP+   S                +LH GFR  + +   KAVA+Y++EGGHV++ VNPLF S  M++  AL+LL HH+MLP+ LWG LFTP SQRK YGRLSQAIF+AA+P
Sbjct:   27 ATDAAVNPVGAAPGRLRLAEYPVSTLATDLSHGFASLHYRGQSDTEKTIAVLRAWNLMSGTHRQDSSYGAFNQVVRALALDHVTAILVQQRPPNCRDMPPGTPLYGPMSEVSD---------DSDPSDLLHEGFRGFE-SGEGKAVAYYVMEGGHVRLSVNPLFESMLMSMTDALSLLEHHRMLPIFLWGCLFTPFSQRKLYGRLSQAIFSAASP 231
[Close]
BLAST of NO02G05730 vs. NCBI_GenBank
Match: EWM27081.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 6.800e-12
Identity = 112/418 (26.79%), Postives = 162/418 (38.76%), Query Frame = 0 
Query:    8 KNTCTACRSAKIRCDRAEPSCDRCTKLGITCIEQVRTQGRPRKAPISPMPTESIPCETAPMACDLGSLSPPLQGAGVPTAHINCHIIRSSEIPPSGCCSERCTGGTSTLASIGSTAKSFRRPRSADYPVSSLATDLSHGFANFHNRGQTCKEKTIAVLRAWGLVSGTHRQDSSHGAFNQIVRTLALDHGTAIRVQQRP---------PPTRDVPAGTPLYGPVILHSSXXXXXXXXXXXXXXXVLHAGFRDVDFASVEKAVAFYI----IEGGHVQVGVNPLFHSTHMTVPQALALLSHHKMLPVLLWGALFTPASQRKFYGRLSQAIFTAATPVGEMTMDVECVGRHEEEAFWGRATVRHVVEDEGAYASCIISIEPLGVDDARLPPSPAAMTAFPIVGKNKRSSAIAAREGPGERG 413
            + TCTAC+++K++CDR  P C RC +L +TC++Q R QGRP K                       S S   +G   P   I   +      P     SE     TST               +ADY        ++  F+N    G   + KT AVLR W L S  +  D + G  +     LAL   +   +Q+ P         PP +                 XXXXXXXXXXXXXX  L  G      AS++  V+  I      GG  +V  N  F ST  +             LPV ++  +  P  + +F   L+   F   T + ++T  V+ + R   + F     +R +  + G Y + I+++EP  +    L  S  A T                +EGPG  G
Sbjct:   25 RRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMK-----------------------SKSSESEGIISPEGMIESTLATREATPARAVSSE-----TST-------------QWAADY--------MAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSV---ALALMDASIQDLQRLPETMASSVALPPDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSD-FLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGT---------------GQEGPGGEG 374
The following BLAST results are available for this feature:
BLAST of NO02G05730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855635.18.600e-10052.58hypothetical protein NGA_0674310 [Nannochloropsis ... [more]
XP_005855636.15.500e-6260.00hypothetical protein NGA_0674320, partial [Nannoch... [more]
EWM27081.16.800e-1226.79Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007272NSK007272Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05730.1NO02G05730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627527gene_1163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05730.1NO02G05730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05730 ID=NO02G05730|Name=NO02G05730|organism=Nannochloropsis oceanica|type=gene|length=3912bp
CAGGCATGGCGCCAAGTCGCGTCTCAAAAAATACGTGCACGGCATGCCGG
AGTGCCAAGgtaagcactggtttttggtggtggatacggggtgagggctg
gtggtttaaaggggggagacgttggctgcttacaaatgccacaaatgcat
attaacagATAAGGTGCGATCGTGCTGAGCCCTCCTGTGACAGgtaggag
gcatgctcgatggatggacagggagtggggtggggtttgcacaaattgaa
gagatgtggtcaagtgggctgggacgggaagggttacacgagcgctgcct
tggactagtttcgcgaccacagcgatgacttgtcttcactttccaaatta
tgtcacaaatgagtgttgtagttggtaaactaggatgtctcctctcctgc
atgggcgtgctttgtcttcctttagcccatctctgacacgccactcttcc
ctttcccctgtttcccccactcccccttcccggcttccgatttagATGCA
CCAAGCTTGGCATAACCTGCATTGAACAGGTGCGCACGCAGGGACGGCCA
CGCAAAGCCCCGATCTCGCCTATGCCCACGGAGAGCATTCCTTGTGAGAC
TGCCCCCATGGCCTGCGATCTAGGGAGCCTCTCGCCCCCGCTGCAGGGAG
CAGGCGTACCGACGGCCCATATCAACTGCCATATCATCAGGAGCAGCGAG
ATACCTCCGTCGGGGTGCTGCTCCGAGCGATGCACGGGGGGAACCAGCAC
CCTTGCCAGCATCGGTAGCACTGCCAAGTCTTTTCGACGTCCCCGCTCCG
CTGACTATCCGGTCTCCAGCCTGGCCACAGACCTGTCGCACGGCTTCGCC
AATTTCCACAACCGCGGCCAGACGTGTAAGGAGAAGACGATAGCTGTCCT
gtaagtcaagtatagctcggttcattactctctcccgtcccttttttaca
atatcctgccttatccagcaccaacccctaccatgccctcccactcactc
atcctctctttccaccctctctcccatagGCGCGCCTGGGGCCTTGTCTC
GGGCACGCACCGGCAAGACAGTTCTCATGGGGCATTTAACCAGATCGTGC
GGACATTGGCACTCGATCATGGCACGGCCATCAGGGTTCAGCAGCGCCCG
CCCCCCACCCGCGATGTCCCGGCAGGCACGCCGCTTTATGGCCCTGTCAT
CCTGCACTCTAGCAGTGATAGTAGCAGTATCAGCAGCAGCAGCAGCGGCA
GTGGCAGTGTCCTTCACGCCGGATTCCGTGATGTGGACTTCGCGAGTGTT
GAAAAGGCAGTTGCCTTTTACATCATCGAGGGAGGCCACGTCCAAGTGGG
TGTCAACCCCCTCTTCCACTCCACACACATGACCGTCCCCCAAGCCCTCG
CCCTCCTCAGCCACCATAAGATGCTTCCTGTCCTCCTATGGGGGGCCCTC
TTCACTCCCGCCTCGCAACGTAAATTCTATGGCCGCCTGAGCCAGGCTAT
CTTCACCGCCGCCACGCCAGTGGGTGAAATGACCATGGACGTGGAGTGCG
TGGGAAGGCATGAGGAGGAGGCGTTTTGGGGCCGGGCAACGGTCAGACAC
GTGGTGGAGGATGAGGGGGCGTATGCATCATGTATTATCTCGATTGAGCC
TTTGGGTGTGGACGATGCGCGCTTGCCACCGTCGCCTGCGGCGATGACGG
CTTTTCCGATCGTGGGCAAGAACAAGAGGAGCTCGGCGATTGCTGCGAGG
GAGGGTCCTGGAGAGCGTGGTAGGGTGGACGCATGGGCAGCAGGAGCGCT
GTGGTTTATGGAGCAGGAAGAAAAAGAATCCTGTCGGGAGGGAGACGATG
AGAGGGAATGGGATGAAGAAGGCACGGCTGGGGAGGACGCGAGCAGCCGC
AGCAACAGCAGCAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTGATGGGAGCGTTCGTGACTTGGGGACGTATGGTGGACCTCCGA
AACGGCGCCAGCAGAAGCGAAAGTGCAATTCACTCACTGGCAACCGCAGG
AGTAGCTTCACCAGCGACGGGAACTGCAACAGGAACACTAGTACTGCCAC
CACCACCAGCAGCATCAGCAGCGATGGCTGTAATTTTGTCACTGGAATGT
ACGACATAGAGGCAAACGATTGCAGGCAGGGAGCTTACGTGGTGGGCTTA
GGTGAGCAGACCCTGAAATCCTTAGGCCCCTTGACCTCAGCGGGGCGAGC
TAATTTCCAGCAGCAGCTGCTGCAGGCATGGCCGCAGCAGCACCAGCAGT
ACCAGCAGGCTCTTTGCACAGACTGTGGAGGAGAGACCTCAGATGAGGAA
GTTGTAGACGAGAAGTCGATGGTGTGGAGCCATTTGGAAGGGCAGATGCA
GCAGCATCCGCAGCGGAGTCAGAGCATTGGAGATTTCCAGTCCACCCTCC
TTTCACTCGCAGCTGTACCTTCTCAAGCCCCTATTCTGACCGGCAGCATC
GATGCCTGTGCGCTCAAGCAGCACGCGATGACGTTGAAGATAGAGGATGG
GGAGGAAGATGACGAATGCAAGGACGAGGGAGGGGCGGGAGATTTCGATG
ACCTGATGCGGTATGGATTTGACTGGGGCTTGATTACACCTTCTCCCCTT
ATGCGTGCGGATGCGGCCAGTTCTGGCGTTGCATCCTCGCCGTTGCTGTC
ACTGACGAGCATGGCAGCCGTCGTGACAACGACGACTACAACCTCCTCCT
CCACATCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCTCTTCCCTCCTCC
GCAAACTCGTTCATTGCCTGCTTGCCAATGAATGCACACTTTTATGGGGG
GGGGGGGGGGGGGTGGTTCGCCGCTGCCAAGTAGAACGATGGCGGAGGGA
GGGAGGGAGGAGGGAGGGGGAGAGGAGCTATAGCTGTCTTATGTTTTATC
TTTGGGTCAAGGAGCGCATGGTGGCATGAGTGATGATTTCATTGTTGGTT
GACAACTTTTCACGCTGTAATGAGGTCTGAGAAAGGCAGATCATCGGGTG
CTATTGCTGCGGGAATAATTTGAGATGATGCCGCTGTTCATGATGCCGTT
CCCGGGTTTTGAATGATGAGTGTATGTTAGTGACGAAGGAGTGAAGGATG
AGAGACCTGAACGAGAGACACCCCTATAAATGGAATGAGAGATGGTTGGG
GATAAATGAGGTGGAGGATGAGTGAGGGTCGGGAATAGAGGAGGTGGGAG
ACAGCGCGCCGAGAATTGACTTTGATTAAGGTGAAAATGGGTAAGGACTT
TCCACCATTGCATGAACCTCGTAGGTCTATGTAGAGCTGGCGGATGAAGA
GAAGGAGGGAAGGAAGCCGTGTCGTGGAGGATGAGAGGGAGAATTGGGCT
TGTGTTTGTGAAGCGTCTGTGTGACTGTGTGCCTGCATGTCTGTATTTTT
TTGGTGAGTTCGCCGTCTGTAGACTTACTTCTATCTTTGTATGTATGTTG
TTTATCTTCATGAAATCTGACCCTCCCTTGAGGGGAATTATCAGAATGAC
CGAACACAGAAAGAGCGGGACAGAGAAAGACAGAGAAAAAGAGGGAGACA
GAGAGAGACAGAGAGAGACATAGAAACAGGACCGGAGGGGGTGAGAAAAA
GGAAAAGAGAAAAAGAGAAAGACAGAAGGACAGAAGGACAGCTTGCGAGA
CAGAGAAAGACAGAAGGACAGCTAGCGAGACAGAGAAAGGGAGCAGATGG
AAGGAGGGCAGGGGGGCATCGACCTGTAATACAAGGCTCAATGCCCCATA
ATCAATGTCTCGACGAATAATCGTCACGAAATTTAGAACCTTTTTCCTTA
AAATGCAAAAGAAAAACCAAAAAATGAGACATTCTAATTATAAATATGCA
TTAGATTTCGGA
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protein sequence of NO02G05730.1

>NO02G05730.1-protein ID=NO02G05730.1-protein|Name=NO02G05730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=783bp
MAPSRVSKNTCTACRSAKIRCDRAEPSCDRCTKLGITCIEQVRTQGRPRK
APISPMPTESIPCETAPMACDLGSLSPPLQGAGVPTAHINCHIIRSSEIP
PSGCCSERCTGGTSTLASIGSTAKSFRRPRSADYPVSSLATDLSHGFANF
HNRGQTCKEKTIAVLRAWGLVSGTHRQDSSHGAFNQIVRTLALDHGTAIR
VQQRPPPTRDVPAGTPLYGPVILHSSSDSSSISSSSSGSGSVLHAGFRDV
DFASVEKAVAFYIIEGGHVQVGVNPLFHSTHMTVPQALALLSHHKMLPVL
LWGALFTPASQRKFYGRLSQAIFTAATPVGEMTMDVECVGRHEEEAFWGR
ATVRHVVEDEGAYASCIISIEPLGVDDARLPPSPAAMTAFPIVGKNKRSS
AIAAREGPGERGRVDAWAAGALWFMEQEEKESCREGDDEREWDEEGTAGE
DASSRSNSSSSSRSSSSSSSSSSSDGSVRDLGTYGGPPKRRQQKRKCNSL
TGNRRSSFTSDGNCNRNTSTATTTSSISSDGCNFVTGMYDIEANDCRQGA
YVVGLGEQTLKSLGPLTSAGRANFQQQLLQAWPQQHQQYQQALCTDCGGE
TSDEEVVDEKSMVWSHLEGQMQQHPQRSQSIGDFQSTLLSLAAVPSQAPI
LTGSIDACALKQHAMTLKIEDGEEDDECKDEGGAGDFDDLMRYGFDWGLI
TPSPLMRADAASSGVASSPLLSLTSMAAVVTTTTTTSSSTSSSSSSSSSP
PLPSSANSFIACLPMNAHFYGGGGGGWFAAAK*
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Synonyms
Publications