NO02G05720, NO02G05720 (gene) Nannochloropsis oceanica

Overview
NameNO02G05720
Unique NameNO02G05720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2171
Alignment locationchr2:1522471..1524641 +

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Properties
Property NameValue
DescriptionDihydrolipoamide s-acetyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1522471..1524641 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR000089Biotin_lipoyl
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO02G05720 vs. NCBI_GenBank
Match: EWM30104.1 (dihydrolipoamide s-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 2.700e-34
Identity = 84/123 (68.29%), Postives = 94/123 (76.42%), Query Frame = 0
Query:    1 MLALASRRTAALAAST-TGIRASLVRPTKATSTLSGSRGIGFATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVI 123
            MLA ASRR     A T  G R +L R ++     S      FA+LPEHTVVG+PALSPTMTHGN+A+WHKKEGD+IGPGD LCDIETDKATMAFEAQD+  +AKILV EG SDIAVGSPIMVI
Sbjct:    1 MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMVI 123          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: XP_018219804.1 (LAT1-like protein [Saccharomyces eubayanus] >KOG97086.1 LAT1-like protein [Saccharomyces eubayanus])

HSP 1 Score: 133.3 bits (334), Expect = 1.100e-27
Identity = 63/99 (63.64%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSN 140
            +A+ P HT++G+PALSPTMT GNLA+W KKEGD + PG+V+ +IETDKA M FE Q+D  LAKILV EG  DI V  PI V VE KDDVAAF DF L +
Sbjct:   28 YASYPAHTIIGMPALSPTMTQGNLAVWSKKEGDQLAPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKDDVAAFKDFKLED 126          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: XP_009827045.1 (pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Aphanomyces astaci] >ETV83615.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Aphanomyces astaci])

HSP 1 Score: 132.1 bits (331), Expect = 2.400e-27
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 0
Query:   20 RASLVRPTKATSTLSGSRGIGFATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSNITP 143
            R  LVRP+        S    F+TLPEH VVGLPALSPTM  G ++ W KKEGD I  GD++C IETDKA + FEAQDD+ LAKIL  EG++D+ VG PI V VE   ++ AFA FSLS + P
Sbjct:   13 RQLLVRPS--------STARAFSTLPEHEVVGLPALSPTMETGTISTWLKKEGDKIAAGDIVCQIETDKAVVDFEAQDDSYLAKILKPEGSADVKVGEPIFVTVEDPSEIPAFASFSLSGVAP 127          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: EJT43569.1 (LAT1-like protein [Saccharomyces kudriavzevii IFO 1802])

HSP 1 Score: 131.7 bits (330), Expect = 3.200e-27
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSN 140
            +A+ PEHT++G+PALSPTMT GNLA+W KKEGD + PG+V+ +IETDKA M FE Q+D  LAKILV EG  DI V  PI V VE K+DV AF DF L +
Sbjct:   28 YASYPEHTIIGMPALSPTMTQGNLAVWSKKEGDQLAPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKNDVPAFKDFKLED 126          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: EWM27998.1 (dihydrolipoamide s-acetyltransferase (e2 component of pyruvate dehydrogenase complex) [Nannochloropsis gaditana])

HSP 1 Score: 131.3 bits (329), Expect = 4.200e-27
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFS 137
            F++LP H VVGLPALSPTM HG +A W KKEGD  GPGDV+C+IETDKA ++F+AQD+ +LAKILV   A ++ VG PIMV VE   +VAAFA+FS
Sbjct:   88 FSSLPPHQVVGLPALSPTMEHGTIASWTKKEGDSFGPGDVICEIETDKAVVSFDAQDEGILAKILVQPSAGEVRVGQPIMVTVEDAANVAAFANFS 183          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: EJS41948.1 (lat1p [Saccharomyces arboricola H-6])

HSP 1 Score: 130.2 bits (326), Expect = 9.300e-27
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSN 140
            +A+ P+HT++G+PALSPTMT GNLA+W KKEGD + PG+V+ +IETDKA M FE Q+D  LAKILV EG  DI V  PI V VE K+DV AF DF L +
Sbjct:   28 YASYPQHTIIGMPALSPTMTQGNLAVWTKKEGDQLAPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKNDVPAFKDFKLED 126          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: XP_002494423.1 (uncharacterized protein ZYRO0A01144g [Zygosaccharomyces rouxii] >CAR25490.1 ZYRO0A01144p [Zygosaccharomyces rouxii] >GAV46462.1 hypothetical protein ZYGR_0A00540 [Zygosaccharomyces rouxii])

HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSNITP 143
            +A+ P HTV+G+PALSPTM  GNLA W KKEG+ IG GDVL +IETDKATM FE QD+A LAKILV EG  DI +G PI V VE   DV AF DF +    P
Sbjct:   26 YASYPAHTVIGMPALSPTMAQGNLAQWSKKEGEQIGAGDVLAEIETDKATMDFEFQDEAYLAKILVPEGTKDIPIGKPIAVTVEDGGDVDAFKDFKVEESAP 127          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: AJT24869.1 (Lat1p [Saccharomyces cerevisiae YJM1388])

HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26
Identity = 63/99 (63.64%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSN 140
            +A+ PEHTV+G+PALSPTMT GNLA W KKEGD + PG+V+ +IETDKA M FE Q+D  LAKILV EG  DI V  PI V VE K DV AF DF L +
Sbjct:   28 YASYPEHTVIGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKADVPAFKDFKLED 126          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: AJT30741.1 (Lat1p [Saccharomyces cerevisiae YJM1460])

HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26
Identity = 63/99 (63.64%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSN 140
            +A+ PEHTV+G+PALSPTMT GNLA W KKEGD + PG+V+ +IETDKA M FE Q+D  LAKILV EG  DI V  PI V VE K DV AF DF L +
Sbjct:   28 YASYPEHTVIGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKADVPAFKDFKLED 126          
BLAST of NO02G05720 vs. NCBI_GenBank
Match: EGA81184.1 (Lat1p [Saccharomyces cerevisiae Lalvin QA23])

HSP 1 Score: 129.4 bits (324), Expect = 1.600e-26
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   41 FATLPEHTVVGLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAVLAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSN 140
            +A+ PEHT++G+PALSPTMT GNLA W KKEGD + PG+V+ +IETDKA M FE Q+D  LAKILV EG  DI V  PI V VE K DV AF DF L +
Sbjct:   28 YASYPEHTIIGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKADVPAFKDFKLED 126          
The following BLAST results are available for this feature:
BLAST of NO02G05720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30104.12.700e-3468.29dihydrolipoamide s-acetyltransferase [Nannochlorop... [more]
XP_018219804.11.100e-2763.64LAT1-like protein [Saccharomyces eubayanus] >KOG97... [more]
XP_009827045.12.400e-2756.10pyruvate dehydrogenase complex dihydrolipoamide ac... [more]
EJT43569.13.200e-2762.63LAT1-like protein [Saccharomyces kudriavzevii IFO ... [more]
EWM27998.14.200e-2764.58dihydrolipoamide s-acetyltransferase (e2 component... [more]
EJS41948.19.300e-2761.62lat1p [Saccharomyces arboricola H-6][more]
XP_002494423.11.200e-2662.75uncharacterized protein ZYRO0A01144g [Zygosaccharo... [more]
AJT24869.11.200e-2663.64Lat1p [Saccharomyces cerevisiae YJM1388][more]
AJT30741.11.200e-2663.64Lat1p [Saccharomyces cerevisiae YJM1460][more]
EGA81184.11.600e-2662.63Lat1p [Saccharomyces cerevisiae Lalvin QA23][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007271NSK007271Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05720.1NO02G05720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|154330gene_1161Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100258g1gene551Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05720.1NO02G05720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05720 ID=NO02G05720|Name=NO02G05720|organism=Nannochloropsis oceanica|type=gene|length=2171bp
ATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCAC
AGgtacgcttgtttattgctccttatctcgtcggcgaatgaaagggatcg
cgagctgttgttcgtgtgctctctatttcgggggtagggggaaagggggg
gtggggttgggggggggatgcgtgatgtgtattagttgaaatcatggcct
ctgtgcctgtccatgctctgtctcgaccgcttgcggcacatactatagat
ttttgcccgtgtcgtttgattatgtcgaagcgctctgtgcctccatcccc
acgagtactcacctcccaatctcaacgcatccatagGCATCCGTGCGTCG
CTCGTTCGACCCACAAAGGCCACAAGCACCCTTTCTGGAAGCAGAGGGAT
CGGTTTCGCCACCCTCCCCGAGCATACGGTGGTTGGTCTACCCGgtacgt
gtggcgtgaccagagggtgggaatgaaggcgaatcgatgatactcctccc
ggcggaagtgccgatgattggttggttggatactttttacagagacatcg
ataccacagtcttttttgtggctaaatgatggtgaaaaagccaggttgat
gactcacatgcttttcttcagctaaccattaccatccctctacactgtat
agCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTGGCACAAAA
AGgtacgcgaggggtcgataaataatattgtgccctcagcccaattcttc
ccgcgtttccgtcgcattcgtcgccattccaccccactgatcactccctc
cctccctccctccctccctccgccccacgtagGAGGGCGATGATATTGGC
CCAGGGGACGTGCTTTGCGACATCGAGACGGACAAGGCCACCATGGCGTT
CGAAGCTCAGgtatggacacaacacgggaaaaaaaagggaaggatggagg
gaggaaggggggtgggacgggggtcaccgggaggctccggtgtggacagg
ggggaagagtaaagggaaggacggaggaaagaaggtatggaatgcagggg
gagagggcacggtggagggaggggttggacagaagctataggccgtgcac
tgtcacatagttctttgttttggaaaaatcaacaaaccaagatggaatat
aatttaatttctcatatctcttttctcccacctactttgtcgctctcttc
taacacagGACGATGCTGTGCTGGCCAAGATCCTGGTCACAGAAGGGGCA
AGTGACATCGCCGTCGGCTCGCCCATCATGgtacccccacctttctctcc
ccttctcccttcctcgctccctctctctctatccttcccttcatctgcct
gccactcgtgcccccccccatccttcctccttctcgcaaccaacatccgc
tacgcatccgctgcccaaccaactttccttttgaccctccttccctccct
ccctccctcacactcgcctcccctccctccttcattccctccttcccctc
ttccccatcatcatctctcagGTCATCGTTGAATCCAAAGATGACGTCGC
CGCCTTCGCGGACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCC
CCGCCGCAGCGAAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCG
ACAACAGCCTCTCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGC
ACCCGCGGCAGCAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTA
CTACTACTGCCACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCA
ATACCAGCAGATGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGG
AGGGGCCTTGGCCAAGAGgtgagggtgggagggagggagggagggggggt
tgggtatatcacggggaaaatgcgggcgtgtgctgaaacatgatgtgcat
attttggctgtgagtcagagtgtttcaccgtacatacatagaaagaggta
tgggttggcttctctatatgctccgtcattcctccaactttgtgcactca
ttctcactcaattcatccctcctccttgcccttcctccctcttcaccctc
cctgcagCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCG
ACAGGACAGACACCATTATAA
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protein sequence of NO02G05720.1

>NO02G05720.1-protein ID=NO02G05720.1-protein|Name=NO02G05720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLALASRRTAALAASTTGIRASLVRPTKATSTLSGSRGIGFATLPEHTVV
GLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAV
LAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSNITPAPAAPAAA
KEEEASAPPPPPPTTASPPPPPPPPKPAAAPAAAAPVAPPPASATATTTA
TAPPPSPSPSSSSIPADAYAFKRWGTFSRGGALAKSLSKAQKAYVEAYGS
TGQTPL*
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Synonyms
Publications