NO02G05680, NO02G05680 (gene) Nannochloropsis oceanica

Overview
NameNO02G05680
Unique NameNO02G05680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4129
Alignment locationchr2:1505942..1510070 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1505942..1510070 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05680.1NO02G05680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05680.1NO02G05680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05680 ID=NO02G05680|Name=NO02G05680|organism=Nannochloropsis oceanica|type=gene|length=4129bp
AAACAACAGGGCCTGTGCATGATGGACGCATCAGCAAAAAGAAGAAGAAG
GAGGATAAGAAAGGCATGCTGCAGCAGCACCACGAACTGGAGCCTGCAGG
AACTTGGGGCCACTCTCCTTCTCCTCGTCTGCAGCAGCCTCGTCCTCGTG
CCAGCCAAAGCTGGGCTGCCTCCTGCGCCTCCACCCACCGTCACCACCGA
CCCCAGCAACAGGCCCAGCACCAGTAGTGACAGCAGTAGCAGTAGTAGAC
AACAGCCTCCGCCCTTCCATCCGTCCGAAGCGCTGCCGCCCTTGTCACCA
CCACCATTACGAGCGACGTCGGCCCAGGAGGCGGCAGGGTCTGTCTCCTC
CTCCTCCTCACCGTGGCCGTCAACAGCGACAATGGAAGCTGACACAGgtg
ccaatggggggatgtaggaagaagggatataataacttgaaggaggcacg
aacatttcatccgcgccattcaaagtggtgacgaacagggcatggggaaa
agaggaaaaagggaagagggacggaggacgttcatgcgatcactctctgg
ggcctccaattctccccatcatcacctcattgaacccttcttccctcccc
atcatcacacagCTACTTCTCCTGGTGCCCCGTACGCGGGGAGGGAGGAC
GTGGGGTTTGAGGGGGGGGCGAGGGGACACAGCCTTCTCCCCCTGTCACC
GTGTTCGACATCCTATCTTCAAGTACCGCTGGGGAGGGAGGAGAGGATGA
AGGGATTGAAGCAGGTGGAGCAGCAGCAGTGGCTGAACCGGATCCTTACA
CGGGGCAATATTACTCGGGAGAAGGCGTCGGGATCACTGGTTTCGATGGA
CGGGGGGCTAAGCAGCAGCAGCAACAACAGCAGCAGCCCCAGCAGCAGCA
GCACCACCAGCAGCACCACCACCAGAAGCAGCACCACCACCAGAAGCAGC
ACCAGCACCATTCAGCGCCTCTTCCATCGTCGTCTTATTGGGAGGGAGGC
GGAGAAGGAGGAGGAGGTGGTGGTGGTGGTGGTCTGGAACGGGAATATTC
GGGAACAGGTTTGGGGCGGCAGGAGGGGACATGGCAACGGACAGGCCTTC
CCTCTTACCCAGCGTCAGGAGGACAAGAAGAAAAAGAAGAACGACACGAA
CAACAAGGACGAGAAAACGAAGGACAAGGAGAGAGAGGGGAAGGGGTCTT
GGGAGGAGGGCCTCCCGGTACTTATTACCCTCCCTTTCCGCCCTCACAAA
AACGAAGAAGTGGCGAGTCTTGGGCTCAACAACAACAGCAGCAGCAGCAG
CAGCAGCATCAGCAGCAGCAGCCACAAGACCATTCTTTTCCTCCCTCTCC
TCCCTACTACGGCGgttcttcccctcttccgcctctccctcccccttcct
accctcccctcccatcccaacctccttacgggggccagctccctctcttc
tccccttctccccctacccaccttcatatccctctggggaataccagCAG
CCGTATGGGCAACAGTATGAGCAGCAGCAGCAGCAACAACAGCAGGGCTG
GCGCGAGGGAGGGAGGGAGGGAGGTTCATCCTTCTTAAATCGGTTGAAGA
TGCGGGGCAAGGGGCTGCGGGCGCGCCTCAAGGAGACAGCGCAAAAGGTG
ATGAGTACCGTGCAGACACCGAGAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGATGGGAGGCGTATTACGAGGAGGACAGAGAAGGCTCGGAAGGGAGGT
GGGGGGAGGGTGAGAGGTGGTATGACTCCAACTACCCTCCTCCTCCTCCT
CCTCCTTCTTCTTCTTCTTCACACCTTCCTTCCCGTCCTCCTCCTCCCCC
GGGTAGGAACGCGGCTGGTCGGCCATGGGGATCGAAGGATGAGGAGGGCG
AGGAGAGGGATGAGGAGGAGGACGAGGAGGAGGAGGAGCAGCGGTGGCGT
CGAGATGAAGGAGAAGGATACTATGTGGGAGGCGGGAGGGAGGGCGGGAG
GGAGGAAGCGGAGGAACAACGGGCAGCTGTGGAGCGACGGAAGGCGCTGT
TGGAGAAGGAGGAGGACGAGTGGACGAGAAAAGGGAAGGGGGAGGCACCA
CTCTATACAGAGTCTGATAGGGAGGCGGAACGGGCGTTTGAAAGTACGGA
GGAGGGGTGGGGGAAGGGAGGGAGGGAGGGAGGGGCCGCTTCACGATTGT
ATGAGCAGCCGAGTGATTTTGATGAGGGGTGGGAGGAGGAGGGAGGGGGT
GAGCAAAGGGACGAGTGGTTCAGCCCTTCTTCATCCTCGTTTCCTCACGT
TGATGTTTCTCGGGAGAGGGCGCGAGCGTCTGCTTTCTTGGCAGGAGAGG
GAGGGGAGTTGGGCGTTTGGGACATGGAGGGGGAGGGAGGGAGGGAGAGA
GGGGGAGGGGCGATGAGGAAGGTGTGGAGGGGAGTCGTGAAGGGGGTAGG
ATTGCTGGCTTGGCCGGTGGTGGCGGCGGGCTCTTTACTGGTGGGTCGAA
GACGTGAGGTGGATAGgtacagcgctgcagcagaggcggagtttgatgag
tcggactcccacctttcatcctttccgtcctccctccctccctcggcccc
tgccgcagacgaggtactgcggcggccggcaaaaggtagagggagtgtgg
tcacagACCTGTGGGTCGTGTGGGGGTGTGGGGGGAAGGAGGGAGGGAGG
GCGGGGGGAGGAAGGCCAAGGCGGTGGTGGTAGGACTGGTGGGGCTGAGT
GTGTTGACGGCAATGGCGAGGGTGGGGGCTTTGGTCTGCTTAGGTCAATG
GATGCAGCATTCGGTGTTGAGCGAGGCTTTTGATTTGGGCACGGGAGgta
aagagggattgagggaggaaaggagggaaggagggagtcgggttgtgata
tgcaggcttcaaacctgctcccctcctcgtaagaccaacacgtttcccta
tcccacatgttcctccatcccccccttcctccctcacagGCACGCCGTCC
TACGATACTGCCCTCCTCCACCACTCCCTCTTTTGGGCAGGAGGCTTTTT
CCTCTCCGCCTACCTCGCCAACCTGTCATCCCCTTCCTCCTCCAGCGGTC
TCGTCCCCTCCCTCCTTCACCTCCTCTCCTCCTCTTCCTCCTCCTCTCCG
TCGTCCTCTCTCCTTTCTTCACGCTTGGACGAACTGGCAGGAGCGGGAGG
GAATGATCTCCTTCCCTTCCTCCTCCTCCAACACCTCAAGGCCCGCCTTG
CCGGCCTTTCCTCCCTCCTCACCCTTCTCCTCCTCCCATCCCTCCTCTTC
CTCCCCTTCCCCGCCGTCTCCTCCTTCCTTTCCTCCCTCCCTCCCTTCTT
GCACGGGACTCTCCCCTCCTACACGCTCTCCCTGCAACACCTCCTCCCCT
CCCTCCCTCCCTCCCTCCTTTCCTTCCTACAAGTCAAGCTTGGCTCCGAT
CGTTACGCCTCCCTCCTCCGCTTCTTCGTCTCCACCCCCTCCATCTCCTA
CAGACCCGCCCACCTCCTTCTTTCCTTCTCCCTCTTTTCCCTCCTCTTCC
TCCTTGCCTCCTCCTCCTTCTTCGTCCCCGAGGCCTGGATGAAGGTTGCC
CCCGCTCCCTCCGCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTCAGGGA
CCGGACAAGGAGGGTGGGGGGAATGGTGGCGTTGGCGGTATGGCGGCTGC
AGTCGACCGTCCTCCTTCTCTCCCTCCTTGCCTTCCTTCTGTGGGCGGTG
AGGGACCTGAACCTGTCTGTAGGGGCGGGGGGAGGAGGAGGAGGAAGAGG
ACGAGGGATTGGGGGAGGGAGGGAGTGGGTCTGGTTGGTGGGAGGGGTGG
GGATGATGCTGTGGGAGGGGGTGAGGGAGGGAAGGGAGGCGGCGAGGGAA
GCCGTGCTTTGGAGTCACGTGGAGGGAGGAGGAGTGCTAGGAGCGGTATA
CCGAGCTGTGGCGGCAGGTGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAG
GGAAGGAGGAGTGGGAGGGAAGGAGGAGGGAGGGAAGGAGGAGGGAGGGA
GGGATGGACGACTGAGGGGCGGGTGCCTGAGGAGGGGTTGAAGATGGAGA
GGGTGTGGGTGAGGAAAGGGGGAGGGAGG
back to top

protein sequence of NO02G05680.1

>NO02G05680.1-protein ID=NO02G05680.1-protein|Name=NO02G05680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1139bp
MMDASAKRRRRRIRKACCSSTTNWSLQELGATLLLLVCSSLVLVPAKAGL
PPAPPPTVTTDPSNRPSTSSDSSSSSRQQPPPFHPSEALPPLSPPPLRAT
SAQEAAGSVSSSSSPWPSTATMEADTATSPGAPYAGREDVGFEGGARGHS
LLPLSPCSTSYLQVPLGREERMKGLKQVEQQQWLNRILTRGNITREKASG
SLVSMDGGLSSSSNNSSSPSSSSTTSSTTTRSSTTTRSSTSTIQRLFHRR
LIGREAEKEEEVVVVVVWNGNIREQVWGGRRGHGNGQAFPLTQRQEDKKK
KKNDTNNKDEKTKDKEREGKGSWEEGLPVLITLPFRPHKNEEVASLGLNN
NSSSSSSSISSSSHKTILFLPLLPTTAQPYGQQYEQQQQQQQQGWREGGR
EGGSSFLNRLKMRGKGLRARLKETAQKVMSTVQTPREGGREGGREGWEAY
YEEDREGSEGRWGEGERWYDSNYPPPPPPPSSSSSHLPSRPPPPPGRNAA
GRPWGSKDEEGEERDEEEDEEEEEQRWRRDEGEGYYVGGGREGGREEAEE
QRAAVERRKALLEKEEDEWTRKGKGEAPLYTESDREAERAFESTEEGWGK
GGREGGAASRLYEQPSDFDEGWEEEGGGEQRDEWFSPSSSSFPHVDVSRE
RARASAFLAGEGGELGVWDMEGEGGRERGGGAMRKVWRGVVKGVGLLAWP
VVAAGSLLVGRRREVDRPVGRVGVWGEGGREGGGRKAKAVVVGLVGLSVL
TAMARVGALVCLGQWMQHSVLSEAFDLGTGGTPSYDTALLHHSLFWAGGF
FLSAYLANLSSPSSSSGLVPSLLHLLSSSSSSSPSSSLLSSRLDELAGAG
GNDLLPFLLLQHLKARLAGLSSLLTLLLLPSLLFLPFPAVSSFLSSLPPF
LHGTLPSYTLSLQHLLPSLPPSLLSFLQVKLGSDRYASLLRFFVSTPSIS
YRPAHLLLSFSLFSLLFLLASSSFFVPEAWMKVAPAPSAFPPSLPPSLLR
DRTRRVGGMVALAVWRLQSTVLLLSLLAFLLWAVRDLNLSVGAGGGGGGR
GRGIGGGREWVWLVGGVGMMLWEGVREGREAAREAVLWSHVEGGGVLGAV
YRAVAAGGGGGGGGGGGGKEEWEGRRREGRRREGGMDD*
back to top
Synonyms
Publications