NO02G05650, NO02G05650 (gene) Nannochloropsis oceanica

Overview
NameNO02G05650
Unique NameNO02G05650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1025
Alignment locationchr2:1500017..1501041 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlucokinase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1500017..1501041 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
[Close]
BLAST of NO02G05650 vs. NCBI_GenBank
Match: XP_005854855.1 (glucokinase [Nannochloropsis gaditana CCMP526] >EKU21509.1 glucokinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.5 bits (236), Expect = 9.400e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 
Query:   44 VYDTKAKPTYLKAPSDGVVTALGLGGLTLVFLRTMTGFGDMALGVNKVEVQ 95
            ++DTKAKPTYLKAP DGVVTALGLGGL+LVFLRTMTGFGDMA GVNKVEVQ
Sbjct:  323 MFDTKAKPTYLKAPFDGVVTALGLGGLSLVFLRTMTGFGDMAFGVNKVEVQ 373
The following BLAST results are available for this feature:
BLAST of NO02G05650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854855.19.400e-1790.20glucokinase [Nannochloropsis gaditana CCMP526] >EK... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007324NSK007324Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05650.1NO02G05650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05650.1NO02G05650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05650 ID=NO02G05650|Name=NO02G05650|organism=Nannochloropsis oceanica|type=gene|length=1025bp
ATGGCTCTGCTCTACAAAGgtacgttcgtagcctagggcaggaagggagg
agcgaggggtgagaggggagggaggaggagaggaactctgtttttgcggc
gccctcccgggatgctcttcgagactaattttacgtcgagagcatcttac
gccctggtagtcagatatgtatagatagcaaaggggggtaaacggtaagg
gcaggtggaagacttgtccggaaagccaaaagggagaggacatgtggaga
aggcccgtacggcggcctggtcggatccatgtccatgaatgtcactggga
ttcagcaaggggatgcctaccaacgtagagtaataatgagaggcggggag
atcgagtaatacagagagatagggatagaaagagaaagggatagcacgag
gacgacacaggaaggtgtctattggcgccgtgcagatttcccaggcatat
catctctgctttgttgactcaaacaaacaaatgtctccttccctctatct
ctgcacttgtagGTGTGACTCGCGTCACCGCTGCCTCTGCCCGCACGATG
GTTCCCCGCCGCTCCATGGGCATATTCCACCCACTGGCCATGAAACCGTA
CCAGCTGCCCAAGACGCAGAAGgtgagggaagggggagggaaggagggaa
aggagggggaactaaatagtctttctgctagatgagcgtgaaggaagagg
agaggagggaaggataaggtggcatttatcaacttatatgagttgtcatt
gaatggcttataccaacatatccttctttcttccttccttcccttccacc
ctcctttcccccttcctcttcccctcgctcgtccttttcgctcgtccttt
tcctcttgttctcctacagGTCTACGACACTAAGGCCAAGCCCACTTACC
TCAAGGCGCCTTCGGATGGGGTCGTGACCGCTCTTGGTTTGGGGGGACTC
ACCCTCGTCTTCCTTCGCACCATGACCGGATTTGGGGACATGGCTCTGGG
GGTTAATAAAGTGGAAGTTCAGTAA
back to top

protein sequence of NO02G05650.1

>NO02G05650.1-protein ID=NO02G05650.1-protein|Name=NO02G05650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MALLYKGVTRVTAASARTMVPRRSMGIFHPLAMKPYQLPKTQKVYDTKAK
PTYLKAPSDGVVTALGLGGLTLVFLRTMTGFGDMALGVNKVEVQ*
back to top
Synonyms
Publications