NO02G05620, NO02G05620 (gene) Nannochloropsis oceanica

Overview
NameNO02G05620
Unique NameNO02G05620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr2:1493157..1494422 -

Link to JBrowse

Properties
Property NameValue
DescriptionIsobutyryl-CoA dehydrogenase, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1493157..1494422 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009100AcylCoA_DH/oxidase_NM_dom
IPR036250AcylCo_DH-like_C
IPR013786AcylCoA_DH/ox_N
IPR009075AcylCo_DH/oxidase_C
IPR006091Acyl-CoA_Oxase/DH_cen-dom
Homology
BLAST of NO02G05620 vs. NCBI_GenBank
Match: EWM30173.1 (isobutyryl- mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 654.1 bits (1686), Expect = 3.000e-184
Identity = 326/432 (75.46%), Postives = 373/432 (86.34%), Query Frame = 0
Query:    1 MSSLLRLSRRCLLSTCSTN---APRRLLLP----------SSSTFSTLPEIATPTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQ 420
            M++ LR  RR + S   T      +R  +P           SS  +TLP+IA PT GLD TQ EYF+LAHSFAKNELTP  A++WDSKEIFPVETM+KAA+LGFGAVFVREDVGGSGMSRLEGS++FEALAAGCTSTAAY+TIHSMCGWMLD+FGTE QR +WLP+MATM+  SSYCLTEPNSGSDA SLSTKAVR+GDSY++NGSKAFISGAGVSD+YLVMCRTG KGP GISC++VEKGT GLSFG PEKK+GWKSQPTATV+F D RVP  NL+G EGEGFKYAM+GLDGGRINIATCSVGAAQAC+E+TRAYI ER+QFG+A+G+NQYVQFKFA+M T++VGARLMVR+AAR+LD KD  A+  CAMAK+VATD AF V NDA+Q+HGGYGYLKDYHVERYLRDVRVHQILEGTNEIM++I+ARKLLQ
Sbjct:    1 MATFLRFPRRFITSPSITKFIAGTKRNRVPYVCIPTLSSIQSSHLATLPDIAAPTLGLDETQCEYFNLAHSFAKNELTPDNAAKWDSKEIFPVETMRKAAQLGFGAVFVREDVGGSGMSRLEGSVIFEALAAGCTSTAAYMTIHSMCGWMLDSFGTEAQRQRWLPRMATMDLLSSYCLTEPNSGSDAVSLSTKAVREGDSYVLNGSKAFISGAGVSDVYLVMCRTGEKGPRGISCILVEKGTEGLSFGAPEKKLGWKSQPTATVTFTDCRVPASNLIGVEGEGFKYAMKGLDGGRINIATCSVGAAQACVEKTRAYIMERRQFGKAIGENQYVQFKFAEMVTSVVGARLMVRQAARLLDAKDSQATVACAMAKKVATDSAFTVINDALQMHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMQIIIARKLLQ 432          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: WP_043949176.1 (acyl-CoA dehydrogenase [Candidatus Phaeomarinobacter ectocarpi] >CDO61364.1 Branched-chain acyl-CoA dehydrogenase [Candidatus Phaeomarinobacter ectocarpi])

HSP 1 Score: 508.4 bits (1308), Expect = 2.100e-140
Identity = 243/374 (64.97%), Postives = 298/374 (79.68%), Query Frame = 0
Query:   45 LDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLL 419
            L   Q  +F  A  FA NEL P  A+EWD K IFPV+TM+KAA LGF  ++VREDVGGS ++RL+ +++FEAL+ GCTSTAAY++IH+M  WM+DTFG E+QR KWLP + +M+  +SYCLTEP++GSDA SL TKAVRDGD Y+INGSKAFISG+G SD+Y+ M RTGG G GG+SC+VVEKGTPGLSFG  EKKMGW SQPTA V FED RVP+ NL+G EG+GFK AM+GLDGGR+NI  CS+G AQ  L+   AY  +R+QFG+A+   Q  QFK ADMAT L  ARL++R+AA  LD+K PDA+  CAMAKR+ATD  F V N A+Q+HGGYGYLKDY +ER+LRDVRVHQILEGTNEIMRVI++R++L
Sbjct:    5 LTEDQRAFFDTASDFAANELAPH-AAEWDEKAIFPVDTMRKAAALGFAGIYVREDVGGSALTRLDAALIFEALSQGCTSTAAYISIHNMASWMIDTFGNEDQRQKWLPSLTSMDLIASYCLTEPSAGSDAASLKTKAVRDGDHYVINGSKAFISGSGSSDVYVCMIRTGGDGAGGVSCIVVEKGTPGLSFGATEKKMGWNSQPTAAVIFEDCRVPVENLIGNEGDGFKIAMKGLDGGRLNIGACSLGTAQVALDTAIAYAKDREQFGKAISTFQATQFKLADMATELEAARLLLRQAATKLDQKAPDATQHCAMAKRLATDTGFEVVNQALQIHGGYGYLKDYPLERHLRDVRVHQILEGTNEIMRVIISREML 377          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: WP_097152134.1 (acyl-CoA dehydrogenase [Cohaesibacter gelatinilyticus] >SNZ07338.1 hypothetical protein SAMN06265368_0856 [Cohaesibacter gelatinilyticus])

HSP 1 Score: 506.1 bits (1302), Expect = 1.000e-139
Identity = 240/373 (64.34%), Postives = 299/373 (80.16%), Query Frame = 0
Query:   45 LDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKL 418
            L   Q  +  +A  FA NE+ P  A EWD K IFPV+T++ AA LGFG ++V++DVGGSG+SRL+ +I+FE L+ GCTST+AY++IH+M  WM+DTF  +EQR KWLP + TM+ F+SYCLTEPN+GSDAG+L TKAVRDGD Y++NGSKAFISG GV+D+Y+VM RTG  GP GISCVVVEK TPGLSFG  E K+GWKSQPTA V+FED R+P  NL+G+EG+GFK AM GLDGGR+NI  CS+GAAQ+CL+R   Y+ ERKQFGRA+ + Q +QF+ ADMAT L  ARLM+  AA ++D K PDA+   AMAKR+ATD  FN+ N A+QLHGGYGYL+DY +ERYLRDVRVHQILEGTNE+MR+I++R L
Sbjct:    5 LSEEQRAFQEMAADFAANEMEP-YAKEWDEKSIFPVDTLRAAAALGFGGIYVKDDVGGSGLSRLDAAIIFEELSKGCTSTSAYISIHNMASWMIDTFANDEQRNKWLPSLCTMDKFASYCLTEPNAGSDAGALRTKAVRDGDHYVLNGSKAFISGGGVADVYVVMVRTGQDGPKGISCVVVEKDTPGLSFGAQEVKLGWKSQPTAQVNFEDCRIPAENLIGEEGQGFKIAMAGLDGGRLNIGACSLGAAQSCLDRAIDYMKERKQFGRAIAEFQALQFRVADMATELESARLMLHRAATLVDAKTPDATTQAAMAKRLATDAGFNIVNQALQLHGGYGYLRDYPIERYLRDVRVHQILEGTNEVMRLIISRDL 376          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: XP_022624930.1 (isobutyryl-CoA dehydrogenase, mitochondrial [Seriola dumerili])

HSP 1 Score: 504.2 bits (1297), Expect = 3.900e-139
Identity = 243/397 (61.21%), Postives = 308/397 (77.58%), Query Frame = 0
Query:   22 RRLLLPSSSTFSTLPEIATPTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLL 419
            +R+LL  SS    +     P  GL   Q E+  +A  FA NE+ P +A EWD KEIFPVETM+KAA+LGFG ++V+ D GGSG+SRL+ S++FEAL+ GC ST AY++IH+MCGWM+DTFG  EQR K+ P + +ME F+SYCLTEP SGSDA SL T A R GD YI+NGSKAFISG G +D+Y+VMCRTGGKGP GISC+VVEKGTPGLSFG  EKK+GW SQPT  V FED  VP+ N +G+EG+GF  AM+GL+GGRINIA+CS+GAA AC++  R ++  RKQFG  + +NQ++QFK A+MAT LV +RL+VREAA  L     DA ++C+MAK  ATD  FN+CN A+Q+HGGYGYLKDY V++++RD+RVHQILEGTNE+MR+I++R LL
Sbjct:   21 QRVLLNRSSQRRGIASCVDPAHGLTDEQKEFQKVAFDFAANEMAPHMA-EWDQKEIFPVETMRKAAQLGFGGIYVQPDFGGSGLSRLDTSVIFEALSTGCVSTTAYISIHNMCGWMIDTFGNNEQREKFCPDLCSMEKFASYCLTEPGSGSDAASLLTSAQRKGDHYILNGSKAFISGGGDTDVYVVMCRTGGKGPKGISCLVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCEVPVSNRLGEEGQGFGIAMKGLNGGRINIASCSLGAAHACVQLARDHLLVRKQFGETLSNNQFLQFKLAEMATKLVASRLLVREAATALQENRSDAVSLCSMAKLFATDECFNICNQALQMHGGYGYLKDYAVQQFVRDIRVHQILEGTNEVMRMIISRNLL 416          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: XP_023258069.1 (isobutyryl-CoA dehydrogenase, mitochondrial [Seriola lalandi dorsalis])

HSP 1 Score: 504.2 bits (1297), Expect = 3.900e-139
Identity = 243/397 (61.21%), Postives = 308/397 (77.58%), Query Frame = 0
Query:   22 RRLLLPSSSTFSTLPEIATPTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLL 419
            +R+LL  SS    +     P  GL   Q E+  +A  FA NE+ P +A EWD KEIFPVETM+KAA+LGFG ++V+ D GGSG+SRL+ S++FEAL+ GC ST AY++IH+MCGWM+DTFG  EQR K+ P + +ME F+SYCLTEP SGSDA SL T A R GD YI+NGSKAFISG G +D+Y+VMCRTGGKGP GISC+VVEKGTPGLSFG  EKK+GW SQPT  V FED  VP+ N +G+EG+GF  AM+GL+GGRINIA+CS+GAA AC++  R ++  RKQFG  + +NQ++QFK A+MAT LV +RL+VREAA  L     DA ++C+MAK  ATD  FN+CN A+Q+HGGYGYLKDY V++++RD+RVHQILEGTNE+MR+I++R LL
Sbjct:   21 QRVLLNRSSQRRGIASCVDPAHGLTDEQKEFQKVAFDFAANEMAPHMA-EWDQKEIFPVETMRKAAQLGFGGIYVQPDFGGSGLSRLDTSVIFEALSTGCVSTTAYISIHNMCGWMIDTFGNNEQREKFCPDLCSMEKFASYCLTEPGSGSDAASLLTSAQRKGDHYILNGSKAFISGGGDTDVYVVMCRTGGKGPKGISCLVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCEVPVSNRLGEEGQGFGIAMKGLNGGRINIASCSLGAAHACVQLARDHLLVRKQFGETLSNNQFLQFKLAEMATKLVASRLLVREAATALQENRSDAVSLCSMAKLFATDECFNICNQALQMHGGYGYLKDYAVQQFVRDIRVHQILEGTNEVMRMIISRNLL 416          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: XP_008489338.1 (PREDICTED: isobutyryl-CoA dehydrogenase, mitochondrial, partial [Calypte anna])

HSP 1 Score: 503.8 bits (1296), Expect = 5.100e-139
Identity = 242/380 (63.68%), Postives = 302/380 (79.47%), Query Frame = 0
Query:   41 PTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQG 421
            P+ GL   Q E+  +A  FA  E+ P +A EWD KEIFPVETM+KAA+LGFG ++V+ DVGGSG+SRL+ S++FEAL+ GCTST AY++IH+MC WM+DTFG EEQR K+ P + +ME F+SYCLTEP SGSDA SL T A R GD+Y++NGSKAFISG G +D+Y+VMCRTGG GP GISC+VVEKGTPGLSFG  E+K+GW SQPT  V FED  VP+GN +G EG+GF  AM+GL+GGRINIA+CS+GAA A +   R ++T RKQFG  + +NQY+QF+ A+MAT LV ARLMVR AAR L     DA+ +C+MAK  ATD  F +CN A+Q+HGGYGYLKDY V++++RD+RVHQILEGTNE+MR+IVAR LLQG
Sbjct:   14 PSAGLSEEQKEFQKVALDFAAQEMAPHMA-EWDEKEIFPVETMRKAAQLGFGGIYVKPDVGGSGLSRLDTSVIFEALSTGCTSTTAYMSIHNMCVWMIDTFGNEEQRHKFCPSLCSMEKFASYCLTEPGSGSDAASLLTAAQRKGDTYVLNGSKAFISGGGDTDVYVVMCRTGGPGPKGISCLVVEKGTPGLSFGKKERKVGWNSQPTRAVIFEDCIVPVGNRLGAEGQGFSIAMKGLNGGRINIASCSLGAAHASVLLARDHLTVRKQFGEPLANNQYLQFRLAEMATRLVAARLMVRHAARALQEGQEDAAVLCSMAKLFATDECFLICNQALQMHGGYGYLKDYAVQQFVRDIRVHQILEGTNEVMRMIVARNLLQG 392          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: KFO98797.1 (hypothetical protein N300_04856, partial [Calypte anna])

HSP 1 Score: 503.8 bits (1296), Expect = 5.100e-139
Identity = 242/380 (63.68%), Postives = 302/380 (79.47%), Query Frame = 0
Query:   41 PTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQG 421
            P+ GL   Q E+  +A  FA  E+ P +A EWD KEIFPVETM+KAA+LGFG ++V+ DVGGSG+SRL+ S++FEAL+ GCTST AY++IH+MC WM+DTFG EEQR K+ P + +ME F+SYCLTEP SGSDA SL T A R GD+Y++NGSKAFISG G +D+Y+VMCRTGG GP GISC+VVEKGTPGLSFG  E+K+GW SQPT  V FED  VP+GN +G EG+GF  AM+GL+GGRINIA+CS+GAA A +   R ++T RKQFG  + +NQY+QF+ A+MAT LV ARLMVR AAR L     DA+ +C+MAK  ATD  F +CN A+Q+HGGYGYLKDY V++++RD+RVHQILEGTNE+MR+IVAR LLQG
Sbjct:   13 PSAGLSEEQKEFQKVALDFAAQEMAPHMA-EWDEKEIFPVETMRKAAQLGFGGIYVKPDVGGSGLSRLDTSVIFEALSTGCTSTTAYMSIHNMCVWMIDTFGNEEQRHKFCPSLCSMEKFASYCLTEPGSGSDAASLLTAAQRKGDTYVLNGSKAFISGGGDTDVYVVMCRTGGPGPKGISCLVVEKGTPGLSFGKKERKVGWNSQPTRAVIFEDCIVPVGNRLGAEGQGFSIAMKGLNGGRINIASCSLGAAHASVLLARDHLTVRKQFGEPLANNQYLQFRLAEMATRLVAARLMVRHAARALQEGQEDAAVLCSMAKLFATDECFLICNQALQMHGGYGYLKDYAVQQFVRDIRVHQILEGTNEVMRMIVARNLLQG 391          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: XP_021231647.1 (isobutyryl-CoA dehydrogenase, mitochondrial [Numida meleagris])

HSP 1 Score: 503.8 bits (1296), Expect = 5.100e-139
Identity = 247/401 (61.60%), Postives = 306/401 (76.31%), Query Frame = 0
Query:   20 APRRLLLPSSSTFSTLPEIATPTCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQG 421
            APRR   P       +     P+ GL   Q E+  +A  FA  E+ P +A EWD KEIFPVETM+KAA LGFG ++V+ DVGGSG+SRL+ SI+FEAL+ GCTST AY++IH+MC WM+DTFG EEQR ++ P + +ME F+SYCLTEP SGSDA SL T A R GD+Y++NGSKAFISG G +D+Y+VMCRTGG GP GISCVV+EKGTPGLSFG  EKK+GW SQPT  V FED  VP+GN +G EG+GF  AM+GL+GGRINIA+CS+GAA A +   + ++T RKQFG  +  NQY+QF+ A+MAT LV ARLMVR AA+ L     DA+ +C+MAK  ATD  F +CN A+Q+HGGYGYLKDY V++++RDVRVHQILEGTNE+MR+IVAR LLQG
Sbjct:   44 APRRFAAPLLLRRRGIASCIDPSAGLTEEQKEFQKVALDFATKEMAPHMA-EWDEKEIFPVETMRKAARLGFGGIYVKPDVGGSGLSRLDTSIIFEALSTGCTSTTAYMSIHNMCAWMIDTFGNEEQRHRFCPSLCSMEKFASYCLTEPGSGSDAASLLTSAKRKGDTYVLNGSKAFISGGGDTDVYVVMCRTGGPGPKGISCVVLEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCVVPVGNRLGAEGQGFSIAMKGLNGGRINIASCSLGAAHASVLLAQEHLTVRKQFGEPLASNQYLQFRLAEMATRLVAARLMVRNAAQALQEGREDAAVLCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQFVRDVRVHQILEGTNEVMRMIVARSLLQG 443          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: KFQ19847.1 (hypothetical protein N332_11884, partial [Mesitornis unicolor])

HSP 1 Score: 502.7 bits (1293), Expect = 1.100e-138
Identity = 241/379 (63.59%), Postives = 302/379 (79.68%), Query Frame = 0
Query:   42 TCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQG 421
            + GL   Q E+  +A  FA  E+ P +A EWD KEIFPVETM+KAA+LGFG ++V+ DVGGSG+SRL+ S++FEAL+ GCTST AY++IH+MC WM+DTFG EEQR ++ P + +ME F+SYCLTEP SGSDA SL T A R GD+Y++NGSKAFISG G +D+YLVMCRTGG GP GISC+V+EKGTPGLSFG  EKK+GW SQPT  V FED  VP+GN +G EG+GF  AM+GL+GGRINIA+CS+GAA A +   + ++T RKQFG  + +NQY+QF+ A+MAT LV ARLMVR AAR L     DA+A+C+MAK  ATD  F +CN A+Q+HGGYGYLKDY V++++RD+RVHQILEGTNE+MR+IVAR LLQG
Sbjct:    1 SAGLTEEQKEFQKVAFDFAAKEMAPHMA-EWDEKEIFPVETMRKAAQLGFGGIYVKPDVGGSGLSRLDTSVIFEALSTGCTSTTAYMSIHNMCVWMIDTFGNEEQRRRFCPSLCSMEKFASYCLTEPGSGSDAASLLTSAQRKGDTYVLNGSKAFISGGGDTDVYLVMCRTGGPGPKGISCLVLEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCVVPVGNRLGAEGQGFSIAMKGLNGGRINIASCSLGAAHASVLLAQEHVTVRKQFGEPLANNQYLQFRLAEMATRLVAARLMVRNAARALQEGREDAAALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQFVRDIRVHQILEGTNEVMRMIVARNLLQG 378          
BLAST of NO02G05620 vs. NCBI_GenBank
Match: XP_010186208.1 (PREDICTED: isobutyryl-CoA dehydrogenase, mitochondrial, partial [Mesitornis unicolor])

HSP 1 Score: 502.7 bits (1293), Expect = 1.100e-138
Identity = 241/379 (63.59%), Postives = 302/379 (79.68%), Query Frame = 0
Query:   42 TCGLDATQLEYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDVGGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKWLPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGAGVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTATVSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERTRAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDPDASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQILEGTNEIMRVIVARKLLQG 421
            + GL   Q E+  +A  FA  E+ P +A EWD KEIFPVETM+KAA+LGFG ++V+ DVGGSG+SRL+ S++FEAL+ GCTST AY++IH+MC WM+DTFG EEQR ++ P + +ME F+SYCLTEP SGSDA SL T A R GD+Y++NGSKAFISG G +D+YLVMCRTGG GP GISC+V+EKGTPGLSFG  EKK+GW SQPT  V FED  VP+GN +G EG+GF  AM+GL+GGRINIA+CS+GAA A +   + ++T RKQFG  + +NQY+QF+ A+MAT LV ARLMVR AAR L     DA+A+C+MAK  ATD  F +CN A+Q+HGGYGYLKDY V++++RD+RVHQILEGTNE+MR+IVAR LLQG
Sbjct:    7 SAGLTEEQKEFQKVAFDFAAKEMAPHMA-EWDEKEIFPVETMRKAAQLGFGGIYVKPDVGGSGLSRLDTSVIFEALSTGCTSTTAYMSIHNMCVWMIDTFGNEEQRRRFCPSLCSMEKFASYCLTEPGSGSDAASLLTSAQRKGDTYVLNGSKAFISGGGDTDVYLVMCRTGGPGPKGISCLVLEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCVVPVGNRLGAEGQGFSIAMKGLNGGRINIASCSLGAAHASVLLAQEHVTVRKQFGEPLANNQYLQFRLAEMATRLVAARLMVRNAARALQEGREDAAALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQFVRDIRVHQILEGTNEVMRMIVARNLLQG 384          
The following BLAST results are available for this feature:
BLAST of NO02G05620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30173.13.000e-18475.46isobutyryl- mitochondrial [Nannochloropsis gaditan... [more]
WP_043949176.12.100e-14064.97acyl-CoA dehydrogenase [Candidatus Phaeomarinobact... [more]
WP_097152134.11.000e-13964.34acyl-CoA dehydrogenase [Cohaesibacter gelatinilyti... [more]
XP_022624930.13.900e-13961.21isobutyryl-CoA dehydrogenase, mitochondrial [Serio... [more]
XP_023258069.13.900e-13961.21isobutyryl-CoA dehydrogenase, mitochondrial [Serio... [more]
XP_008489338.15.100e-13963.68PREDICTED: isobutyryl-CoA dehydrogenase, mitochond... [more]
KFO98797.15.100e-13963.68hypothetical protein N300_04856, partial [Calypte ... [more]
XP_021231647.15.100e-13961.60isobutyryl-CoA dehydrogenase, mitochondrial [Numid... [more]
KFQ19847.11.100e-13863.59hypothetical protein N332_11884, partial [Mesitorn... [more]
XP_010186208.11.100e-13863.59PREDICTED: isobutyryl-CoA dehydrogenase, mitochond... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007192NSK007192Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05620.1NO02G05620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575529gene_1149Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100096g20gene492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05620.1NO02G05620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05620 ID=NO02G05620|Name=NO02G05620|organism=Nannochloropsis oceanica|type=gene|length=1266bp
ATGTCTTCCTTACTCCGACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAG
CACCAACGCTCCTCGTCGCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAA
CCTTGCCTGAAATTGCCACACCCACCTGTGGCCTGGACGCGACGCAACTC
GAGTATTTTTCGCTAGCGCACTCGTTTGCCAAGAACGAGTTGACCCCGGC
CCTGGCCTCGGAATGGGACAGCAAGGAAATTTTTCCTGTGGAAACCATGC
AGAAAGCGGCCGAATTAGGATTTGGGGCGGTGTTTGTGAGGGAGGACGTG
GGGGGGAGTGGCATGTCACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTT
GGCTGCAGGATGCACCAGCACAGCGGCGTATTTGACGATTCACTCTATGT
GTGGGTGGATGCTGGACACGTTCGGTACGGAGGAGCAACGCCTGAAGTGG
TTGCCCAAGATGGCGACGATGGAGTTTTTTTCTTCGTATTGTTTGACGGA
ACCCAATAGTGGCAGTGATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGG
ACGGCGATTCCTACATTATAAACGGCAGCAAGGCCTTTATCAGTGGCGCA
GGGGTAAGTGACCTGTACTTGGTAATGTGTCGAACAGGGGGGAAGGGCCC
TGGTGGTATCTCATGCGTGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTT
TTGGGGTACCAGAAAAAAAGATGGGATGGAAGTCGCAGCCGACAGCGACA
GTGAGTTTTGAGGATGTCCGGGTGCCGATAGGTAATTTGGTGGGGAAGGA
GGGAGAGGGTTTTAAATATGCGATGAGAGGGTTGGATGGGGGGAGAATTA
ACATTGCAACTTGTAGTGTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACG
CGGGCGTACATCACGGAAAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAA
TCAGTATGTGCAGTTTAAGTTTGCAGACATGGCGACTGCATTGGTGGGGG
CGCGCTTGATGGTTAGGGAGGCGGCGAGAATGCTTGATCGAAAGGACCCG
GATGCGAGTGCCATGTGCGCGATGGCAAAGAGGGTGGCGACGGACGTGGC
GTTCAACGTATGTAATGACGCTGTTCAGTTGCATGGGGGCTATGGGTATT
TGAAGGATTATCACGTGGAGAGGTACTTGAGAGACGTGAGGGTGCATCAG
ATCTTGGAGGGGACGAATGAGATAATGAGGGTGATTGTGGCGAGGAAGCT
GTTGCAGGGAGAGTAG
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protein sequence of NO02G05620.1

>NO02G05620.1-protein ID=NO02G05620.1-protein|Name=NO02G05620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MSSLLRLSRRCLLSTCSTNAPRRLLLPSSSTFSTLPEIATPTCGLDATQL
EYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDV
GGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTFGTEEQRLKW
LPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGA
GVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTAT
VSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERT
RAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDP
DASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQ
ILEGTNEIMRVIVARKLLQGE*
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Synonyms
Publications