NO02G05550, NO02G05550 (gene) Nannochloropsis oceanica

Overview
NameNO02G05550
Unique NameNO02G05550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1183
Alignment locationchr2:1478337..1479519 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1478337..1479519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005762mitochondrial large ribosomal subunit
Homology
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: CBJ32731.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 8.300e-11
Identity = 43/104 (41.35%), Postives = 55/104 (52.88%), Query Frame = 0 
Query:   69 KNAWYIKMIDEPPGQLTRAFPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLS 173
            K    +K++D  P  +     EE Q  F  IG +YN +     +    DL  K+KL+ +AI  LPE LQ  A   D  P PL RR+ TYTPPIPGF+   Y LS
Sbjct:   72 KTMTLLKLLDARPEPMPELSAEEKQRNF-DIGRRYNSKMATSHNERMADLTTKIKLRDDAIAHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKKDYGLS 174
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: XP_009529836.1 (hypothetical protein PHYSODRAFT_316187 [Phytophthora sojae] >EGZ16087.1 hypothetical protein PHYSODRAFT_316187 [Phytophthora sojae])

HSP 1 Score: 71.6 bits (174), Expect = 2.700e-9
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 0 
Query:   70 NAWYIKMIDEPPGQLTRA--FPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLSGA 175
            +A + +M+    GQ   A  + EE + + + IG +YN+  +   +    D+  K+ LK EAINALP ELQAEA   D  P P  R + T+TPPIPGF   +Y   GA
Sbjct:   50 DANFEQMLRAIKGQYPEAEEWTEEEKQRHQEIGRRYNIMSSIEHNHFMRDVQTKIDLKWEAINALPAELQAEALEDDMAPVPEERGMATWTPPIPGFR--RYTDEGA 154
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: CCI44866.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 71.6 bits (174), Expect = 2.700e-9
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   81 PGQLTRAFPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGF 165
            P +  + F EE + + R IGH+YN   + + +    DL  K+ LK +AINALP+ELQ EA   D+ P P G  I ++TPPI GF
Sbjct:   78 PPENAKPFTEEEKEQHRIIGHRYNRMTSIKHNHWQRDLQTKIDLKWKAINALPKELQEEALEEDYDPIPPGSYIPSWTPPIKGF 161
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: CCA16140.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA25101.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 71.2 bits (173), Expect = 3.500e-9
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   81 PGQLTRAFPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGF 165
            P +  + F EE + + R IGH+YN   + + +    DL  K+ LK +AINALP+ELQ EA   D+ P P G  I ++TPPI GF
Sbjct:   62 PPENPKPFTEEEKEQHRIIGHRYNRMTSIKHNHWQRDLQTKIDLKWKAINALPKELQEEALQEDYDPIPPGSYIPSWTPPIKGF 145
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: OWZ23171.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 68.9 bits (167), Expect = 1.700e-8
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 0 
Query:   70 NAWYIKMIDEPPGQLTRA--FPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLSGA 175
            +A + +M+    GQ   A  + +E Q + + IG +YN   +   +    D+  K+ LK EAINALP ELQAEA   D  P P  R + T+TPPIPGF   +Y   GA
Sbjct:   50 DANFEQMLRAIKGQYPEAEEWTDEEQKRHQEIGRRYNTMSSIEHNHLMRDVQTKIDLKWEAINALPVELQAEALEDDVAPAPEERGMATWTPPIPGFR--RYTDEGA 154
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: ETI47848.1 (hypothetical protein F443_07992 [Phytophthora parasitica P1569] >ETL94358.1 hypothetical protein L917_07634 [Phytophthora parasitica])

HSP 1 Score: 68.2 bits (165), Expect = 3.000e-8
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0 
Query:   90 EETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLSGA 175
            EE + + + IG +YN+  +   +    DL  K+ LK EAINALP ELQ EA   D +P P  R + T+TPPIPGF   +Y   GA
Sbjct:   72 EEEKQRHQEIGRRYNIMSSIEHNHLMRDLQTKIDLKWEAINALPAELQDEALENDVSPVPEERGMATWTPPIPGFR--RYTDEGA 154
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: XP_008904739.1 (hypothetical protein PPTG_10959 [Phytophthora parasitica INRA-310] >ETK87770.1 hypothetical protein L915_07819 [Phytophthora parasitica] >ETL41189.1 hypothetical protein L916_07749 [Phytophthora parasitica] >ETM47577.1 hypothetical protein L914_07712 [Phytophthora parasitica] >ETN10302.1 hypothetical protein PPTG_10959 [Phytophthora parasitica INRA-310] >ETO76553.1 hypothetical protein F444_08037 [Phytophthora parasitica P1976] >ETP17677.1 hypothetical protein F441_07962 [Phytophthora parasitica CJ01A1] >ETP45667.1 hypothetical protein F442_07930 [Phytophthora parasitica P10297] >KUF84559.1 hypothetical protein AM587_10003694 [Phytophthora nicotianae])

HSP 1 Score: 68.2 bits (165), Expect = 3.000e-8
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0 
Query:   90 EETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLSGA 175
            EE + + + IG +YN+  +   +    DL  K+ LK EAINALP ELQ EA   D +P P  R + T+TPPIPGF   +Y   GA
Sbjct:   72 EEEKQRHQEIGRRYNIMSSIEHNHLMRDLQTKIDLKWEAINALPAELQDEALENDVSPVPEERGMATWTPPIPGFR--RYTDEGA 154
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: XP_008621140.1 (hypothetical protein SDRG_16700 [Saprolegnia diclina VS20] >EQC25434.1 hypothetical protein SDRG_16700 [Saprolegnia diclina VS20])

HSP 1 Score: 67.0 bits (162), Expect = 6.600e-8
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 0 
Query:   74 IKMIDEPPGQLTRAFPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALP-EELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYD 171
            +K  D PP + T A   E Q  F  IG KYN   + R +    DL  K+ LK EAINALP  EL+AEA   DF+  P+ R   T+TPPIPGF+  + D
Sbjct:   54 LKGRDIPPPEWTEA---EKQEHFE-IGRKYNSMTSIRHNALMKDLQLKISLKWEAINALPTAELRAEALVEDFSLVPMTRGFPTWTPPIPGFKRFRDD 147
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: OQR89238.1 (hypothetical protein THRCLA_22722 [Thraustotheca clavata])

HSP 1 Score: 66.6 bits (161), Expect = 8.600e-8
Identity = 44/98 (44.90%), Postives = 55/98 (56.12%), Query Frame = 0 
Query:   74 IKMIDEPPGQLTRAFPEETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALP-EELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYD 171
            +K  D PP + T    EE Q  F  IG KYN   + R +    DL  K+ LK EAINALP  EL+AEA   D +  P+ R   T+TPPIPGF+  + D
Sbjct:   50 LKGRDIPPPEWTE---EEKQQHFE-IGRKYNSMTSLRHNALMKDLQTKIDLKWEAINALPTPELRAEALVEDLSLVPMSRGFPTWTPPIPGFKRFRED 143
[Close]
BLAST of NO02G05550 vs. NCBI_GenBank
Match: XP_002908840.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57654.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-7
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 0 
Query:   90 EETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLSGA 175
            EE + + + IG  +N       +    DL  K+ LK EAINALP ELQ EA  +D +P P  R I T+TPPIPGF   +Y   GA
Sbjct:   73 EEEKQRHQEIGRLFNRMSTIEHNHLMRDLQTKIDLKWEAINALPAELQTEALEIDVSPAPEERGIATWTPPIPGFR--RYTDEGA 155
The following BLAST results are available for this feature:
BLAST of NO02G05550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
CBJ32731.18.300e-1141.35conserved unknown protein [Ectocarpus siliculosus][more]
XP_009529836.12.700e-940.19hypothetical protein PHYSODRAFT_316187 [Phytophtho... [more]
CCI44866.12.700e-944.05unnamed protein product [Albugo candida][more]
CCA16140.13.500e-944.05conserved hypothetical protein [Albugo laibachii N... [more]
OWZ23171.11.700e-840.19putative mitochondrial protein [Phytophthora megak... [more]
ETI47848.13.000e-844.71hypothetical protein F443_07992 [Phytophthora para... [more]
XP_008904739.13.000e-844.71hypothetical protein PPTG_10959 [Phytophthora para... [more]
XP_008621140.16.600e-845.92hypothetical protein SDRG_16700 [Saprolegnia dicli... [more]
OQR89238.18.600e-844.90hypothetical protein THRCLA_22722 [Thraustotheca c... [more]
XP_002908840.12.500e-744.71conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007199NSK007199Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05550.1NO02G05550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636383gene_1142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05550.1NO02G05550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05550 ID=NO02G05550|Name=NO02G05550|organism=Nannochloropsis oceanica|type=gene|length=1183bp
GTCCATGTAGTGAAAGACTAGACTACAGAAACACTAGTCGACACAACTCC
TAAACTCCTGGCTCCTAATGGCATCGACGAGGAGTTTCATAACCTCAATG
ATGCCCACCCTCTAGCCAATAATAGAATCCCTTGAGGAAACATCGGCTCA
CAATCTGAGATGATTTCCAAATTTCACACAGTATCTGCCAGTGTGCCTCC
CGTGACCCTCAGGCACCCCGGCGTACCCACCCGCACGGCCGCCTAGCTCT
CTCAACTGTACAACTCGTCGCCAACGTGGGTATCCAGCTTGCGTCAACGC
AACAGGATAGTCAACCATCCCGCCCAGCATCAGCATCATGGCCTCCCTCG
CCCGCATCTACATCAGCACCAGCTCCAGCAATAGCACTAGGGGCCTCCTC
CGAGCAACATGTCGACAATGTTGGGGAAGAATACAGACACAAACCGCAGC
AAGCATGGGCACGGTAGCCTCTAAGGACAAGAACAAGAAGAAGAAGGGTG
GTGGAGGAGGAAGCGGCGAGGATGGGGGCGGGGACGCGAGCAAGAACGCG
TGGTACATCAAGATGATCGACGAGCCACCAGGACAACTgtacgttggatt
cggggtggatgaaacaagggaagtgggggggacagaggggacggactgag
cagggtcagtgtcatcatttgtccaatttccgtgtgtgtgaggggctggg
gggcgggtacttgtacggatgtgtggatgtgttgatagcatcccgtgtca
gcgcactttcctctcacaacaagaagcacgaaaaattcaccccctctccc
actctctctcctccccctccttttaactcaacagCACCAGGGCCTTTCCC
GAAGAAACTCAAGCGAAATTCCGTGCCATAGGGCACAAATACAACGTGGA
ATACAACCGTCGGGCAAGCCGGCACGCAGGGGACTTGCACCGGAAAGTGA
AACTTAAATTAGAGGCGATCAACGCGCTGCCTGAAGAACTGCAAGCCGAA
GCAAATACTATGGATTTTACGCCTTTTCCCCTCGGGCGGAGGATCACAAC
GTACACTCCTCCTATTCCGGGGTTTGAAGCGGGGAAGTATGACTTATCGG
GGGCAGTCTGAGGGACAACAGAGACAGGGATCATGCGGAGAGATAGAAAG
AGACATGGAAATGAGAGTGTAAGATGGGTTGAT
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protein sequence of NO02G05550.1

>NO02G05550.1-protein ID=NO02G05550.1-protein|Name=NO02G05550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MASLARIYISTSSSNSTRGLLRATCRQCWGRIQTQTAASMGTVASKDKNK
KKKGGGGGSGEDGGGDASKNAWYIKMIDEPPGQLTRAFPEETQAKFRAIG
HKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAEANTMDFTPFPL
GRRITTYTPPIPGFEAGKYDLSGAV*
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Synonyms
Publications