NO02G05490, NO02G05490 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G05490 vs. NCBI_GenBank
Match: EWM30153.1 (50s ribosomal protein l28 [Nannochloropsis gaditana]) HSP 1 Score: 194.9 bits (494), Expect = 1.600e-46 Identity = 102/133 (76.69%), Postives = 111/133 (83.46%), Query Frame = 0 Query: 1 MKAFAFLVALLSLAMAQAFFGPAALKAPRVNTLSSLTTTTSLARKSVTVMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQFQAQH 134 MKAF+FL+ LS+A+AQAF PA + PR S + + ARKS+ VMRERKCELLGKRANRQCR VSFSHIR KK+Q VNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAF KFEVDLHQFQAQH Sbjct: 1 MKAFSFLMVFLSVALAQAFLAPATFQVPRAMDALS-PSPVAPARKSLMVMRERKCELLGKRANRQCRSVSFSHIRNKKTQGVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFAKFEVDLHQFQAQH 132
BLAST of NO02G05490 vs. NCBI_GenBank
Match: CBJ48869.1 (50S ribosomal protein L28 [Ectocarpus siliculosus]) HSP 1 Score: 99.4 bits (246), Expect = 9.200e-18 Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 0 Query: 1 MKAFAF--LVALLSLAMAQAF-FGPAALKAPRVNTLSSLTTTTSLARKSVTVMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQFQA 132 MK FA +A+L +A F P+A V + SS T+ TS + MR R C+LLGK+ NR+ R+V+FSH R K Q +NL ++++W EG +FVRLRLSTK +T+ KYGLNKA KKF +DL +F A Sbjct: 1 MKLFAVAGAMAVLFCQLASGFMIAPSAFAGSSVVSKSSATSPTSSLQ-----MRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129
BLAST of NO02G05490 vs. NCBI_GenBank
Match: XP_009041830.1 (hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens] >EGB03501.1 hypothetical protein AURANDRAFT_39327, partial [Aureococcus anophagefferens]) HSP 1 Score: 94.4 bits (233), Expect = 2.900e-16 Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 0 Query: 50 MRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQF 130 M+ R C++ GKR N + V+FSH R K Q VNL ++R+WW+EG+KFV++R+STK +T+ KYGL K KK++VDL++F Sbjct: 39 MKFRVCDMTGKRRNAKAMTVTFSHTRNHKVQKVNLQDRRLWWSEGNKFVQMRVSTKALKTIAKYGLGKTAKKYDVDLNEF 118
BLAST of NO02G05490 vs. NCBI_GenBank
Match: XP_013246528.1 (50S ribosomal protein L28, putative [Eimeria acervulina] >CDI84524.1 50S ribosomal protein L28, putative [Eimeria acervulina]) HSP 1 Score: 88.6 bits (218), Expect = 1.600e-14 Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 0 Query: 49 VMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDL 127 ++ R+C LLGK NR+ R +S S +RT + Q VNL KR+WWAEG +VRLRLS KG +T+KKYGL +A KF+++L Sbjct: 162 ILPARRCMLLGKMDNRKARSISHSGVRTHRVQRVNLAWKRLWWAEGGHYVRLRLSMKGLKTIKKYGLQRAADKFKLNL 239
BLAST of NO02G05490 vs. NCBI_GenBank
Match: GAX12270.1 (large subunit ribosomal protein L28 [Fistulifera solaris]) HSP 1 Score: 87.4 bits (215), Expect = 3.600e-14 Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 0 Query: 50 MRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFKKFEVDLHQF 130 MR R C+LLGK NRQ R+V+FSH R KK Q VNL KR + E ++ VRLRLSTKG +TV KYG ++KA KKFE+DL +F Sbjct: 3 MRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 83
BLAST of NO02G05490 vs. NCBI_GenBank
Match: CDJ52719.1 (50S ribosomal protein L28, putative [Eimeria brunetti]) HSP 1 Score: 86.7 bits (213), Expect = 6.100e-14 Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 0 Query: 49 VMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLH 128 V+ R+C LLGK NR+ R +S S +RT + Q +NL KR+WWAE +VRLRLS KG +T+KKYGL +A KF+++L+ Sbjct: 105 VLPARRCMLLGKMDNRKARSISHSGVRTHRVQKLNLRWKRLWWAEAGHYVRLRLSMKGLKTIKKYGLQRAANKFKLNLN 183
BLAST of NO02G05490 vs. NCBI_GenBank
Match: OUW04783.1 (50S ribosomal protein L28 [Synechococcus sp. TMED155]) HSP 1 Score: 84.7 bits (208), Expect = 2.300e-13 Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0 Query: 53 RKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQF 130 R C+L GKRAN VS SH+RTKK Q VNL E+R+WWAEG+++VRLR+ST RT++K GL K+ VDL +F Sbjct: 3 RVCQLTGKRANNG-MAVSHSHVRTKKLQXVNLQERRLWWAEGNRWVRLRVSTSAXRTIQKKGLGAYAKQLGVDLSKF 78
BLAST of NO02G05490 vs. NCBI_GenBank
Match: GAX21124.1 (large subunit ribosomal protein L28 [Fistulifera solaris]) HSP 1 Score: 84.7 bits (208), Expect = 2.300e-13 Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 0 Query: 23 AALKAPRVNTLSSLTTTTSLARK----SVTVMRERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYG-LNKAFKKFEVDLHQF 130 AAL +V + + T +K S MR R C+LLGK NRQ R+V+FSH R KK Q VNL KR + E ++ VRLRLSTKG +TV KYG ++KA KKFE+DL +F Sbjct: 11 AALVIIQVQSFTGYTPVFGAGQKTQNGSNMQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 122
BLAST of NO02G05490 vs. NCBI_GenBank
Match: OUT69035.1 (50S ribosomal protein L28 [Synechococcus sp. TMED19] >OUT72034.1 50S ribosomal protein L28 [Synechococcus sp. TMED19]) HSP 1 Score: 84.0 bits (206), Expect = 4.000e-13 Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 53 RKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDLHQF 130 R C+L GKRAN VS SH+RTKK Q VNL E+R+WWAEG ++VRLR+ST RT++K GL K+ VDL +F Sbjct: 3 RVCQLTGKRANNG-MAVSHSHVRTKKLQQVNLQERRLWWAEGKRWVRLRVSTSALRTIQKKGLGAYAKQLGVDLSKF 78
BLAST of NO02G05490 vs. NCBI_GenBank
Match: WP_006909349.1 (50S ribosomal protein L28 [Cyanobium sp. PCC 7001] >EDY37447.1 ribosomal protein L28 [Cyanobium sp. PCC 7001]) HSP 1 Score: 82.8 bits (203), Expect = 8.900e-13 Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 53 RKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRLRLSTKGWRTVKKYGLNKAFKKFEVDL 127 R C+L GKRAN VS SH+RTKK Q VNL E+R+WWAEG++FVRLR+ST+ RT++K GL K+ V+L Sbjct: 3 RVCQLTGKRANNG-MAVSHSHVRTKKLQQVNLQERRLWWAEGNRFVRLRVSTRALRTIQKKGLGAYAKELGVNL 75 The following BLAST results are available for this feature:
BLAST of NO02G05490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G05490 ID=NO02G05490|Name=NO02G05490|organism=Nannochloropsis oceanica|type=gene|length=2797bpback to top protein sequence of NO02G05490.1 >NO02G05490.1-protein ID=NO02G05490.1-protein|Name=NO02G05490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bpback to top Synonyms
Publications
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