NO02G05440, NO02G05440 (gene) Nannochloropsis oceanica

Overview
NameNO02G05440
Unique NameNO02G05440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1091
Alignment locationchr2:1449879..1450969 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1449879..1450969 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G05440 vs. NCBI_GenBank
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 429.1 bits (1102), Expect = 1.100e-116
Identity = 214/301 (71.10%), Postives = 236/301 (78.41%), Query Frame = 0
Query:    1 MRPYRVLLSLAVLVPFLALPS----------------------GTKAAGATRGVTDGEPETAEAHCCGMKGLGGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNAKKVDFVALQRVPKELIPGTTATVEVEYNMVGARAATLSASLMRKGPNIQISSTGDAAKPGQNKMKLMLPVPGDAPREAVYIVVTLTPEGASWEDRLAEDR 280
            M+ +R L+ LA LVPFLAL S                      G  +  ATRG TDGEP TAE HCCGMKGLGGA +EVMCHP+TVAMGK FTVNV +TSD+KRPVDVHVDVLNA TKAFYAGKWEEFDTQAG  SLTI+MP WGV EPFLWKVF+TPRGEPFPNMLAETGFVAHLADYVKNDC  FKSYGF+PPE+ +N K VDFVALQ+VP  L PG+ A V+VEYN+VGA  A LS +LMRKGPN  ISS  D A PGQNK+ L LPVP DAP+EAVYIVVTLTP+GASWEDRLAED+
Sbjct:   81 MQLHRTLIGLAALVPFLALTSAEVEQFEIFPGQATWDSSIELPGMSSKAATRGRTDGEPTTAEGHCCGMKGLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKAILSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDAPKEAVYIVVTLTPDGASWEDRLAEDQ 381          
BLAST of NO02G05440 vs. NCBI_GenBank
Match: EWM25360.1 (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 6.200e-27
Identity = 75/229 (32.75%), Postives = 125/229 (54.59%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNAKKVDFVALQRVPKELIPGTTATVEVEYNMVGARAAT-LSASLMRKGPNIQISSTGDAAKPGQNKMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTY 282
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V ++  P     G    VEV+YN++  + +  +SA+L+R   N  ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVW 261          
BLAST of NO02G05440 vs. NCBI_GenBank
Match: EWM25453.1 (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 6.200e-27
Identity = 75/229 (32.75%), Postives = 125/229 (54.59%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNAKKVDFVALQRVPKELIPGTTATVEVEYNMVGARAAT-LSASLMRKGPNIQISSTGDAAKPGQNKMKLMLPVPGDA-PREAVYIVVTLTPEGASWEDRLAEDRTY 282
            ++V+C P +VA+   F VN+ + +   RP+ +HVD+LNA T  + AG   +    AG  +  I +P+   T PF W  ++ P+ E +PNMLA T F A L   V   C   ++   +P +  D     D+V ++  P     G    VEV+YN++  + +  +SA+L+R   N  ++S  + AK G++ + + + VP DA   E VY++  L P G ++ +R+AEDR +
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKT-PFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVD----FDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVW 261          
BLAST of NO02G05440 vs. NCBI_GenBank
Match: EWM24789.1 (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 7.700e-9
Identity = 51/170 (30.00%), Postives = 75/170 (44.12%), Query Frame = 0
Query:   55 VEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYAGKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGFVAHLADYVKNDCQSFKSYGFNPPEMKDNAKKVDFVALQRVPKELIPGTTATVEVEYNMV--GARAAT-LSASLM 222
            + V+C P  V  G+ F VN+ FT    RP+D+    L+  TK +Y G       Q G  S    +    +T P  +K +++PRGE  PN +  T     L       C       +     +      ++V L  VPK L PG  A + + YN+V    +AAT  + SLM
Sbjct:  147 IGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWT----ETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLM 312          
The following BLAST results are available for this feature:
BLAST of NO02G05440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM30149.11.100e-11671.10hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
EWM25360.16.200e-2732.75hypothetical protein Naga_100005g21 [Nannochlorops... [more]
EWM25453.16.200e-2732.75hypothetical protein Naga_100005g20 [Nannochlorops... [more]
EWM24789.17.700e-930.00hypothetical protein Naga_100912g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007208NSK007208Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05440.1NO02G05440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575452gene_1133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100115g7gene502Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05440.1NO02G05440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05440 ID=NO02G05440|Name=NO02G05440|organism=Nannochloropsis oceanica|type=gene|length=1091bp
CAGTCCTTTGAACCCCCCTACTAAACACAGCCAAACAACAAGCTACTCGA
CATCAGCTCCAAGCAAGTACCAAGAAGGAATCATGCGTCCTTACCGTGTT
CTTCTCAGCCTCGCCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCAC
TAAGGCTGCCGGCGCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGG
CCGAGGCGCACTGCTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAG
GTCATGTGTCACCCTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAA
TGTGAACTTTACGAGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACG
TGCTGAACGCGCAAACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTC
GACACTCAGGCAGGGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGG
TGTGACGGAGCCCTTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGC
CTTTCCCGAACATGTTGGCGGAGACGGGCTTTGTGGCACgtacgtagtag
gagggaaggagggagggtgggaaaatgagggatgaggtagattgttctgt
tgtagatgcaccagatatccattcactgactcttgtccctcatctcgttc
tttcctcctcctgcagACCTTGCCGACTACGTAAAGAACGACTGCCAGAG
CTTCAAATCGTATGGCTTCAACCCCCCCGAGATGAAGGATAACGCCAAGA
AGGTCGATTTTGTCGCCCTCCAGCGCGTTCCCAAGGAGCTCATCCCCGGT
ACCACCGCCACAGTGGAAGTGGAGTACAACATGGTCGGCGCAAGAGCAGC
CACTCTTTCGGCGTCGCTCATGCGCAAGGGCCCCAACATTCAGATCTCAT
CCACCGGGGATGCGGCGAAGCCGGGCCAGAACAAGATGAAACTGATGCTT
CCCGTGCCTGGAGACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACCTT
GACTCCGGAAGGAGCCTCGTGGGAGGATCGTCTTGCAGAGGACCGAACTT
ATCGTGTCAAGATGGCAGGGATGCGAATGCGTCGGGAGTAA
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protein sequence of NO02G05440.1

>NO02G05440.1-protein ID=NO02G05440.1-protein|Name=NO02G05440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNAKKVDFVALQRVPKELIPGTTA
TVEVEYNMVGARAATLSASLMRKGPNIQISSTGDAAKPGQNKMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYRVKMAGMRMRRE*
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Synonyms
Publications