NO02G05380, NO02G05380 (gene) Nannochloropsis oceanica

Overview
NameNO02G05380
Unique NameNO02G05380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length676
Alignment locationchr2:1436966..1437641 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1436966..1437641 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043154negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043066negative regulation of apoptotic process
GO:0019079viral genome replication
Vocabulary: Cellular Component
TermDefinition
GO:0071986Ragulator complex
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR024135LAMTOR5
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007214NSK007214Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05380.1NO02G05380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636367gene_1127Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05380.1NO02G05380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05380 ID=NO02G05380|Name=NO02G05380|organism=Nannochloropsis oceanica|type=gene|length=676bp
ATGACGTCCTCCAATTTCGTTGTTTTGTGTTGGATGAGGTTGAGTTTGAA
AGAGGAAGCAATTGCCCTAGCCGTCCAGCATCGGCGGTGGGgtacgttgg
gacctcccctctcttacaatctcaatttctcacacaacaccacgaataat
ccacacagcgccgctctggaaaatccatcagcagcataataatgtcctat
acgacacccttcgcagACGCCCAGGACGAGGACGGGGTGCAAGGAACGCT
GTGTGCGGACGCTCGAGGCCTGTGCGTCCAAGCAAGTGGTACGGCAGATC
CGAATACCGCTGGCTTCTTCACGGCCTTGGTTCGCCGCGCTGCCACTCTG
GCAGGACCTCCGATAGACGAGAGTAGCGGGGAAAGGGAAGGGTTGACAGT
GTCTATTGAGACGGAGAAGCTgtaagtttgtcgtggtcgggaggacgggc
ggtgggcgggagggtggcaggaagacaagaggatggttggatcgatggca
cccatcaaggctgaaaacctcttcctcatggcttcgtttcactttactaa
gagtcgagatctaatattctcacattcatttatcaacatctcgccctcct
acctctgccactcagCTGTATCATTATCAAGGAGTATGACGACCTCACCC
TGGCCGTGTACCACGCCAGGAGATAG
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protein sequence of NO02G05380.1

>NO02G05380.1-protein ID=NO02G05380.1-protein|Name=NO02G05380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTSSNFVVLCWMRLSLKEEAIALAVQHRRWDAQDEDGVQGTLCADARGLC
VQASGTADPNTAGFFTALVRRAATLAGPPIDESSGEREGLTVSIETEKLC
IIIKEYDDLTLAVYHARR*
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Synonyms
Publications