NO02G05220, NO02G05220 (gene) Nannochloropsis oceanica

Overview
NameNO02G05220
Unique NameNO02G05220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr2:1396407..1397405 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1396407..1397405 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G05220 vs. NCBI_GenBank
Match: EWM30124.1 (hypothetical protein Naga_100541g4 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 3.000e-30
Identity = 83/131 (63.36%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MDNDTLLAEEMQEQVRATHEIVRKLETEIQETMESLELETAAAEARRLRADQGVASLTREQGQMVSAGRKHAALIVKWWLWGLLLGWLLAIIVSVLVSPVLGFIVVVPILAIFLTMGYASSSVEMKVDIAN 132
            M +DTLLAE+MQEQ+RA  E+VRKLE EIQETME LE +TAAAEARRLRADQ VA+L ++Q QMVSAG+KHAALIVKWWLWGLLLGW                         FLT+GYASSSVEMKV  ++
Sbjct:   76 MRDDTLLAEDMQEQIRAMQEVVRKLEFEIQETMEDLEFQTAAAEARRLRADQAVATLHKDQKQMVSAGKKHAALIVKWWLWGLLLGWXXXXXXXXXXXXXXXXXXXXXXXXXFLTVGYASSSVEMKVSASS 206
The following BLAST results are available for this feature:
BLAST of NO02G05220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30124.13.000e-3063.36hypothetical protein Naga_100541g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007242NSK007242Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05220.1NO02G05220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100541g4gene529Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05220.1NO02G05220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05220 ID=NO02G05220|Name=NO02G05220|organism=Nannochloropsis oceanica|type=gene|length=999bp
ATGGACAACGATACACTGCTGGCAGAGGAGATGCAGGAGCAAGTGCGGGC
AACTCACGAGATCGTTCGCAAGgtgagcctcaccacccttttttcctctt
ttctcttcatgcccatgcaactgttcattcctgacgcccccttcccgtca
tttctagCTTGAGACCGAAATCCAAGAGACCATGGAATCACTAGAACTTG
AAACTGCCGCCGCAGAAGCCCGTCGTCTGAGGGCGGATCAAGGCGTCGCC
TCCCTCACCCGAGAACAAGGGCAAATGGTTTCGGCAGGGAGGAAACACGC
CGCTCTAATCGTCAAGTGGTGGTTGTGGGGCTTGTTGCTCGGGTGGCTGC
TGGCAATTATTGTCTCGGTGCTGGTGTCGCCCGTGTTGGGATTCATTGTG
GTGGTCCCCATCCTGGCCATTTTCTTGACAATGGGATATGCGTCGTCGAG
TGTGGAGATGAAGgtagacggaggggaaaggagagtcggagagatcgtgg
gagggagaaggagtagatatctgtcatgaggctttctaagagctgcatgc
cacagatcctttttcttctccttttttctcacttaaatctcccctcctct
cctcgccctttcctccctccttcccgaaagGTGGACATCGCCAATCTTAG
AAAAGAATGCCGGCGTCGAGGTCAGGTCGGCTCACAAACGCCTGAAGTTG
AAACCGAAGAATTTATTGAAACCATTCTAGACGGCGTGGGCTATCCTCAC
CAGGTAGATGGCTTGGGTGGCGGCAGCAACACCAGCAGCAGCAGCAGCAG
CGGTGGGGCCCTTCACCACCGACGGGCTTCCATGGATTACCATTCTGCAC
GACGAGGAGGGGGAGATGGAGGAGGAGGAGGGGGAGGAGGAGGGGTGTTG
TCCACCGTAGGTGGAGGGATATATAATGGCATATCCGCTGTGGGTGGGAC
GGCGATGTGGTTGTTGGGTTTTGGGAAAGGAGGGACGAAGAGGGATTGA
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protein sequence of NO02G05220.1

>NO02G05220.1-protein ID=NO02G05220.1-protein|Name=NO02G05220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MDNDTLLAEEMQEQVRATHEIVRKLETEIQETMESLELETAAAEARRLRA
DQGVASLTREQGQMVSAGRKHAALIVKWWLWGLLLGWLLAIIVSVLVSPV
LGFIVVVPILAIFLTMGYASSSVEMKVDIANLRKECRRRGQVGSQTPEVE
TEEFIETILDGVGYPHQVDGLGGGSNTSSSSSSGGALHHRRASMDYHSAR
RGGGDGGGGGGGGGVLSTVGGGIYNGISAVGGTAMWLLGFGKGGTKRD*
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Synonyms
Publications