NO02G05210, NO02G05210 (gene) Nannochloropsis oceanica

Overview
NameNO02G05210
Unique NameNO02G05210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1041
Alignment locationchr2:1394816..1395856 -

Link to JBrowse

Properties
Property NameValue
DescriptionPutaive LSm10 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1394816..1395856 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
Homology
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BLAST of NO02G05210 vs. NCBI_GenBank
Match: XP_009822452.1 (hypothetical protein H257_01115 [Aphanomyces astaci] >ETV87589.1 hypothetical protein H257_01115 [Aphanomyces astaci])

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 0 
Query:  162 ILLQAMVGQQILVELKTNAEARGILEEADE-NMNLTLILAEHISSSGAVTQHPLPFLFLPGSAVRYVHLPPRLSIDKTIQRHVDALDFNSKRFQRGRLKPAPVGQAPP 269
            +LLQ+M+G  + +ELKT     G +EE  E NM++ L   +  S  GA+    L  +F+ G  + +VHLP RL++   ++ ++  +D N   +QR   KPA    APP
Sbjct:   10 VLLQSMLGMDVKIELKTEYVLEGRVEEVGEGNMDVRLTNVKQTSPQGAIVH--LDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTPSAPP 115
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BLAST of NO02G05210 vs. NCBI_GenBank
Match: OQS07619.1 (hypothetical protein THRCLA_20106 [Thraustotheca clavata])

HSP 1 Score: 64.7 bits (156), Expect = 5.400e-7
Identity = 31/100 (31.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:  162 ILLQAMVGQQILVELKTNAEARGILEEADENMNLTLILAEHISSSGAVTQHPLPFLFLPGSAVRYVHLPPRLSIDKTIQRHVDALDFNSKRFQRGRLKPA 262
            I+LQ+M+G +++++LKT  + +G +EE  + M++ L     I+ +G +    L  LF+ G  + YVH+P R+ ++  ++ +V  ++ N K + R   KPA
Sbjct:   12 IVLQSMLGMEVMIDLKTEYQLKGTIEEVGDGMDVRLSNVSQIAPNGKMLL--LDELFVMGKMILYVHIPDRIHLNTHLKEYVQMVERNKKMYNRAVRKPA 109
The following BLAST results are available for this feature:
BLAST of NO02G05210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_009822452.11.400e-735.19hypothetical protein H257_01115 [Aphanomyces astac... [more]
OQS07619.15.400e-731.00hypothetical protein THRCLA_20106 [Thraustotheca c... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05210.1NO02G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668048gene_1114Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05210.1NO02G05210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05210 ID=NO02G05210|Name=NO02G05210|organism=Nannochloropsis oceanica|type=gene|length=1041bp
ATGATAGCAGTGCAGCACCAGCAGCAGCATGAAAAAGACGAGGGAGGGAG
GGAGAGGTCAGGACAATTGGAGGAGGAGAAGCAAATAACGCACCAGAAGC
GGAAACGTACCGATGAGGAGGAGGATAAGGAGGACAATAAAGCTGAAGGT
GGCGTTGGAGGAGAAGATGATCAACAGGAAGTGGAAGGGGAATCAGAAGA
AAAAAAAGTAGAAGAAGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGACTACAACTCTTTTTTCGATGAAGACAACGAT
AGCGGGCCAGTCCCGTCCCTCTCCTCCTTCTCCTCCTCCACCTCCCACCC
ATCACCAAATCACCACCATCAAGACCCTTCCAGCCACTATCAACTCTCCT
CCTCCTCTTCTCCTCCTTCCTCCCCCCTCCGCCTTCCTCCTCCACCTCGT
CCACCACGTAAAGCCGCGGAAAAAACGCTCGCCATCCTCCTTCAAGCCAT
GGTAGGGCAGCAGATCCTTGTTGAACTCAAAACGAATGCTGAAGCCCGGG
GGATTTTAGAGGAAGgtacgcatagcaagagggacgacaggaaattggaa
gaagggctggaagtcctcgatgatggaaggaaaggtacatgaagagctct
tttgtctcagaaatggccgggccctctcctttcttgcaccccatttttcc
ctccctcccctccttccccgccactatacacagCCGACGAAAACATGAAT
CTCACTCTCATCCTCGCCGAGCATATCTCCTCCTCCGGTGCCGTCACCCA
ACACCCTCTCCCTTTCCTCTTTCTGCCGGGTTCGGCGGTCCGCTACGTCC
ACCTTCCCCCTCGCCTTTCAATAGACAAGACCATTCAAAGACACGTGGAC
GCCCTCGACTTCAACTCTAAACGGTTTCAACGCGGGAGGCTAAAGCCCGC
GCCCGTGGGGCAGGCGCCTCCGGGAGCAAAGACGACGATCGAGGTGCGGT
TGTCTATGCCAGCGGCGAAAGAGACGCGTCCTGAATATTGA
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protein sequence of NO02G05210.1

>NO02G05210.1-protein ID=NO02G05210.1-protein|Name=NO02G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MIAVQHQQQHEKDEGGRERSGQLEEEKQITHQKRKRTDEEEDKEDNKAEG
GVGGEDDQQEVEGESEEKKVEEEEEGEEEEEEEEEEEEEDYNSFFDEDND
SGPVPSLSSFSSSTSHPSPNHHHQDPSSHYQLSSSSSPPSSPLRLPPPPR
PPRKAAEKTLAILLQAMVGQQILVELKTNAEARGILEEADENMNLTLILA
EHISSSGAVTQHPLPFLFLPGSAVRYVHLPPRLSIDKTIQRHVDALDFNS
KRFQRGRLKPAPVGQAPPGAKTTIEVRLSMPAAKETRPEY*
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Synonyms
Publications