NO02G05200, NO02G05200 (gene) Nannochloropsis oceanica

Overview
NameNO02G05200
Unique NameNO02G05200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2016
Alignment locationchr2:1392458..1394473 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1392458..1394473 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
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BLAST of NO02G05200 vs. NCBI_GenBank
Match: EWM30122.1 (hypothetical protein Naga_100994g2 [Nannochloropsis gaditana])

HSP 1 Score: 377.9 bits (969), Expect = 6.700e-101
Identity = 256/567 (45.15%), Postives = 323/567 (56.97%), Query Frame = 0 
Query:   45 LLAAASSTLPSVLLPAFRLSRSDAALEEFHIWLQTKGGLDLSASPLALRRIPF-QENDPSRGTNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLAEIAKLDHIGRLALRIVYEASRAHDSS-------XXXXXXXXXXXXXFENGGWLPYLRVLPSRDDLNLPFLWDEREEENXXXXRXXGEEC---QQNEGLLGLLAPSPLYDDIIEVRAEMRQELKSLRGACTQAIAXXXXXXXXXXXXXXXXXXXXLSLHHVLLPLLTWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNATIYPLLRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHANTQFLSTYGALSSASKFYSFGYLDTLP-PPLSSFSPSSSSSYIISAKGVSCQMQPGL-PAQGTALLVLSLD-----SNGNNKQEGGAA--------------EKTERLLSYTRKAAVLASVGMKAQGQRVEISTRTSFNSSGPTLAQVTIEEVLEAEMEQKGELREG--------GGLERLRRYLRLKYLSEGDLD-FLSS 571
            L A+A+ + P+    +F+LSR DAAL+ F  WL  KGG+DLSAS L LRR+    EN P          +L LFTT  IEKDQILLAIP S+VLTSELPS AL  LA  A LD +GRLALR+++E S+A   S                     +N GWLPY+RVLPSR+ ++LPFLW+E   E         + C      + LL LLAPSPLYDDI+ +R EMR EL+SLR A                          L     +L  LTW+ W+WARA+AMSRPYV +S            S S E   R +    P+L+L+PL+DMANHDD +HYAVQPGDGVFTSR+++QLVADR YP     FLS+YG LSSA+KFYSFG+LDTL  PP +  SP SS   + +++       PGL PAQGTALLVLSLD       GN+K E   +              E+      + RK  VL+S+G+KA+GQRVEISTRT        L +    E + A +  +G   EG          ++RLRRYLRLK++ E D+D FL+S
Sbjct:   54 LCASATPSAPA----SFQLSRDDAALDAFRHWLNVKGGIDLSASSLGLRRLAHDDENSPGN-------ADLELFTTRPIEKDQILLAIPPSIVLTSELPSPALRDLAGDAALDDMGRLALRLLHEVSQAGAGSSFQPLLFSHATSSSSFPTLPLDNSGWLPYVRVLPSRNQMDLPFLWEEDGREGGGEDEGEEDSCGPEDSRDSLLALLAPSPLYDDIVALREEMRGELESLRKA--------------------VLAHRTLPTSPTILSCLTWENWSWARAVAMSRPYVLKSR----------PSRSTEEAGRPDFFGDPVLQLLPLLDMANHDDAIHYAVQPGDGVFTSREEVQLVADRDYPEVGAPFLSSYGPLSSATKFYSFGFLDTLSLPPSARSSPPSS---LFASRESREDDMPGLVPAQGTALLVLSLDGEGCTDEGNHKSEKRRSSPEMPEAAKEEMTREERRARNVFGRKLDVLSSMGLKAEGQRVEISTRT-------LLKRGLGSERMAATVRMEGGEEEGXXXXXXXXXXMDRLRRYLRLKHMGEEDIDGFLNS 569
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BLAST of NO02G05200 vs. NCBI_GenBank
Match: CBJ33334.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.3 bits (168), Expect = 5.100e-8
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0 
Query:  358 LIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHANTQFLSTYGALSSASKFYSFGYL 423
            LIPL+D ANHDD V +AV PGDGVFT   ++  VADR Y     +  +TYG + +A + +SFG++
Sbjct:  302 LIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFVADRTY-RPGEEVCTTYGDMDNAKRLFSFGFV 365
The following BLAST results are available for this feature:
BLAST of NO02G05200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30122.16.700e-10145.15hypothetical protein Naga_100994g2 [Nannochloropsi... [more]
CBJ33334.15.100e-849.23conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007246NSK007246Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05200.1NO02G05200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668047gene_1113Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100994g2gene532Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05200.1NO02G05200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05200 ID=NO02G05200|Name=NO02G05200|organism=Nannochloropsis oceanica|type=gene|length=2016bp
ATGCAGTTTTGGAGGAGAAGACGAGCTTTCCTCGTCTGGATCGGCAATCT
CTTCCTCTCTCTCCGGGGCGACGCCTTCGTGCCACTAGCACCTCGCTGCC
CGAATGTAAAACAGCTTCAGGCTCTCGGTCGTCTTCTCGCAGCAGCCTCC
TCCACCTTGCCCTCCGTGCTACTACCAGCCTTCCGACTGTCCCGCAGCGA
TGCCGCTCTCGAAGAATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGG
ACCTATCTGCGTCACCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAAC
GACCCGAGCAGGGGCACCAACGCAACTCAAATTACAAACCTCGGCCTCTT
CACAACCAGCGCAATTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGT
CTTTAGTGCTAACATCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCG
GAGATCGCAAAGCTTGATCATATCGGTCGCTTGGCTCTTCGCATTGTATA
CGAGGCCAGTCGCGCGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGT
TGTCGTCCTCTTCAAAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGC
GTGCTTCCGTCGCGTGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAG
GGAGGAGGAGAACGAGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAAC
AAAACGAAGGGCTCTTAGGCTTACTGGCACCAAGCCCGCTATACGACGAC
ATAATTGAAGTCCGCGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGG
TGCATGTACCCAAGCAATAGCCACTACTTCAACTACCACCATCACTACCA
GCAGAGACGACCAGCATAACGACGATGAGGCATTGTCCCTTCATCACGTC
CTCCTTCCCCTCCTCACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGC
CATGTCCCGTCCGTATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGA
CCAGCATTTGCAGCAGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCA
ACGATCTATCCGTTGCTCCGCCTCATTCCCTTGATAGACATGGCCAATCA
CGATGACCGCGTTCACTATGCAGTCCAACCAGGGGACGGGGTATTCACCT
CTCGAAAAGACATTCAATTAGTAGCGGACCGCGCATACCCCCACGCAAAC
ACTCAATTCCTCTCCACCTACGGCGCGCTGTCGTCAGCTTCCAAATTTTA
TTCATTCGGATACTTGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTC
CCTCCTCCTCCTCGTCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAG
ATGCAGCCCGGCCTTCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCT
CGACAGCAACGGTAACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGG
AGCGACTTCTGTCTTACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGT
ATGAAGGCACAGGGGCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAA
CAGCTCCGGGCCGACACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGG
CGGAGATGGAGCAGAAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGC
TTGCGACGCTATCTGAGACTCAAATATTTATCTGAGGGGGACCTGGATTT
TTTATCCTCTTCCTCCTTCGCTACTTCAACGTCCTCCCCCTCCAGCCCTG
AAAAGAGGTTGTGGACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAG
TTGGCGGTAGCTCTCGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAG
CGTGCAAGATAGCTTAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGA
GGGAGAGCGAGATAGACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTG
CACGGCGAGATGTTGGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGA
GGTGGAAGCAAATTGA
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protein sequence of NO02G05200.1

>NO02G05200.1-protein ID=NO02G05200.1-protein|Name=NO02G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MQFWRRRRAFLVWIGNLFLSLRGDAFVPLAPRCPNVKQLQALGRLLAAAS
STLPSVLLPAFRLSRSDAALEEFHIWLQTKGGLDLSASPLALRRIPFQEN
DPSRGTNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLA
EIAKLDHIGRLALRIVYEASRAHDSSSSLSSSSLSSSSKFENGGWLPYLR
VLPSRDDLNLPFLWDEREEENENEGREEGEECQQNEGLLGLLAPSPLYDD
IIEVRAEMRQELKSLRGACTQAIATTSTTTITTSRDDQHNDDEALSLHHV
LLPLLTWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNA
TIYPLLRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHAN
TQFLSTYGALSSASKFYSFGYLDTLPPPLSSFSPSSSSSYIISAKGVSCQ
MQPGLPAQGTALLVLSLDSNGNNKQEGGAAEKTERLLSYTRKAAVLASVG
MKAQGQRVEISTRTSFNSSGPTLAQVTIEEVLEAEMEQKGELREGGGLER
LRRYLRLKYLSEGDLDFLSSSSFATSTSSPSSPEKRLWTRLSLPVRKDVE
LAVALEVVSLCSPALQSVQDSLGRVCQRLLEGGRESEIDRHRLGLLQTLL
HGEMLALRAVAELFMSEVEAN*
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Synonyms
Publications