NO02G05160, NO02G05160 (gene) Nannochloropsis oceanica

Overview
NameNO02G05160
Unique NameNO02G05160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2251
Alignment locationchr2:1381152..1383402 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1381152..1383402 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO02G05160 vs. NCBI_GenBank
Match: EWM30112.1 (hypothetical protein Naga_100310g2 [Nannochloropsis gaditana])

HSP 1 Score: 488.0 bits (1255), Expect = 3.300e-134
Identity = 253/471 (53.72%), Postives = 333/471 (70.70%), Query Frame = 0 
Query:   16 RRALVVMALMGMAYALVFAVIYSPQMASSTADSLLNRGLRLQHTIASLRISSNTT-ASGPSA--VAASHGEEXXDEHSSADLIGKNQNVGNTRND-YEPLVGGSLWQALDAEMRARPDFEMLTSTKDVQPFRSPEEMARAQACFRQSKGYGYLLHMRKAGGSTLRGYLSSVVEKQRDHLIYVSEGLTFNVSCFQDQGELVMVTSLRHPMARILSSYWYEGRYDSKPAYLEPGTSTALAAAVVNQTEIEATLPASFSAWVRFVRRNDYIRWAWMSTRWVWYSVDSYYIQTLTNRYRKNTRNNIGRRDFELAKRVLASFDLVSITEWMDWKNQTSYIQHALGQDAEELPYGLLQRNKLSKPKNDSEIDRDFFAELWRANTWDILLYEYAQNLVRERLVAFQDHMTDLEQWRTGSE---NEGVATGARKSRRQQTDQLECRAPRNDPRWRK-RKQDYYKPNNDSYLYVMPRCMD 479
            RRAL +M  + + + ++   +Y+P+ A++T  S   RGL  Q     LRI   T  A  P A    A           + D+  K +NV   + +  EPLVGGSLW+AL+AE+R RPDFE LTSTK V PFR   EMA+ QACFR  KG  +LLHMRKAGG+TLR YLS++VE  R+ L+YV+EG TFNVSCF DQGE++++TSLR P+ARILSSYWYEGRYD KPA L PGT  ALAAA+ ++T+ +A +P SF  WVR+VR+ DY+RW   S R VWYSVD+YY+QTLTNRYR NT   +G+ D+ELA+R+LASFD+V ITEWM W NQT+Y+Q +LG+  ++   G+ QRNKL + ++D+EIDR+ FA +WRANTWD+LLYE+A+NLV +RL AF+      E+ + G++    E ++   R S+  +  +L C+A RNDPRWR+  +QDYYKPN DSYLYVMP+CMD
Sbjct:   13 RRALTIMTALAVGFGVLLTNMYAPKKAATTEMSA--RGLHSQTAKTRLRIGDVTALAKAPFAHWAKADASGASWASTDTQDITRKRKNVEVEKMEAKEPLVGGSLWRALEAELRGRPDFEALTSTKSVCPFRRQAEMAQTQACFRARKGSAFLLHMRKAGGTTLRNYLSALVENDREQLVYVAEGRTFNVSCFHDQGEMMILTSLRQPLARILSSYWYEGRYDYKPAPLVPGTDPALAAAIYDETKAKAAVPLSFQDWVRYVRQMDYVRWTRASARGVWYSVDNYYVQTLTNRYRHNTYAEVGKHDYELARRILASFDVVMITEWMGWANQTAYVQESLGEKGKDPSRGMNQRNKLIRLRDDTEIDREMFASVWRANTWDLLLYEFAKNLVTDRLAAFEK-----EKLQVGAQERSKEALSAANRSSQEGERKELVCQASRNDPRWRRDGRQDYYKPNPDSYLYVMPQCMD 476
[Close]
BLAST of NO02G05160 vs. NCBI_GenBank
Match: XP_009037087.1 (hypothetical protein AURANDRAFT_71641 [Aureococcus anophagefferens] >EGB08367.1 hypothetical protein AURANDRAFT_71641 [Aureococcus anophagefferens])

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-8
Identity = 82/283 (28.98%), Postives = 118/283 (41.70%), Query Frame = 0 
Query:  135 STKDVQPFRSPEEMARAQACFRQSKGYGYLLHMRKAGGSTLRGYLSSVVEKQR-DHLIYVSEGLTFNVSCFQDQGELVMVTSLRHPMARILSSYWYE--GRYDSKPAYLEPGTSTALAAAVVNQTEIEATLPASFSAWVR-FVRRNDYIRWAWMSTRWVWYSVDSYYIQTLTNRYRKNTRNNIGRRDFELAKRVLASFDLVSITEWMDWKNQTSYIQHALGQDAEELPYGLLQRNKLS-----KPKNDSEIDRDFFAELWRANTWDILLYEYAQNLVRERLVA 409
            S +DV  +RS   + R +AC     G  YL H RKA G++LR  L    ++ R D+L   +EGL+ +   F     ++ V SLR P+ R+LS YWYE  G +D                 V +      TL +    WV     + ++ +        V+  V++Y+ + LT   R      +       AK  L  FD V I E     N T  +  ALG    ELP     R   S     +PK  ++ + D    L   N  D  LY YA  L  +R+ A
Sbjct:   46 SKRDVLAWRS--RLERKRACVSSGVGAFYLYHARKAAGTSLRAALQHAAKRSRVDYL--ETEGLSIDAR-FLGLRSVITVVSLRDPVRRVLSMYWYEHVGWHD----------------GVTHDHSKLRTLRSWADEWVEGSAWKREFEK---KHPGNVYVEVENYFTKMLTGWNRDGRGEALDGASLASAKAALDRFDFVFIVERGRRANHTRLLWDALGY---ELPLTSELRGDESAKARLRPKLAAD-EADVVRFLEARNALDAALYAYALALDDDRVAA 300
The following BLAST results are available for this feature:
BLAST of NO02G05160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30112.13.300e-13453.72hypothetical protein Naga_100310g2 [Nannochloropsi... [more]
XP_009037087.11.300e-828.98hypothetical protein AURANDRAFT_71641 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007253NSK007253Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05160.1NO02G05160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575345gene_1108Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100310g2gene541Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05160.1NO02G05160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05160 ID=NO02G05160|Name=NO02G05160|organism=Nannochloropsis oceanica|type=gene|length=2251bp
CGACAGGGCTGGCACGATTTCCAGGCGCGCTTCGCTGGCCTCCCAATTTA
AATTTTGCCGGGCAACGAATTCTGCTGGCCTACACCTGTCCAGGCATAAT
GCAGGCATAATCCATAGATTAGACTGAGAGTCTGACAGCCCACAAAAGCA
ACCGATTGTATTCTCTAGGGACAAGATTGCCGCCAGGTCATACAGCGCCT
TGTTTGAGGGCGTCCAACTCCAAGCTCCAGCGACACGCGTCCTGTCCTGT
CCCCCTGGACCCAGCCAGGGGACCTAACTTCTGATCCCATTCCATCCAAG
AGCCCTACACTACCGCTTTATTGCGTTCTCTGTTGATGACATCCCCCCCC
GCGACGACTTACTCCTGGCGCTCCACGCCCAGGCGGGCGCTCGTCGTTAT
GGCCCTGATGGGGATGGCATATGCCCTTGTCTTCGCGGTCATCTACAGCC
CTCAAATGGCGAGTTCCACCGCGGATTCCCTTTTGAACCGTGGGTTACGG
TTGCAGCATACAATCGCAAGTTTGAGAATCAGTAGCAACACCACAGCGTC
GGGGCCCTCAGCAGTGGCAGCATCACATGGGGAAGAGGAGGAGGATGAAC
ACTCTTCGGCAGACCTGATAGGGAAGAATCAAAACGTCGGTAATACACGC
AACGATTATGAACCCTTGGTAGGCGGCAGTCTGTGGCAAGCCCTGGACGC
GGAGATGCGGGCGCGGCCAGATTTTGAAATGCTGACGTCCACGAAGGATG
TCCAACCGTTCCGATCTCCCGAGGAGATGGCGCGAGCCCAAGCTTGTTTC
CGACAGTCCAAGGGATACGGGTACCTGCTCCACATGCGCAAAGCGGGAGG
ATCAACTTTGCGGGGCTATTTGAGTTCTGTAGTGGAGAAACAGCGGGACC
ATTTAATTTACGTCTCGGAGGGGCTTACCTTCAACGTCTCATGCTTCCAG
GACCAAGGGGAGCTTGTAATGGTCACATCTCTTCGGCACCCCATGGCGCG
TATTCTGTCTTCTTATTGGTACGAGGGAAGGTACGATTCCAAGCCCGCTT
ATTTGGAACCCGGTACGAGTACCGCCCTAGCCGCTGCGGTCGTCAATCAA
ACGGAAATCGAAGCAACCTTGCCGGCGTCTTTTTCCGCATGGGTCCGCTT
TGTCCGACGAAATGATTACATACGTTGGGCTTGGATGAGTACTCGATGGG
TTTGGTACTCCGTAGATTCCTACTATATCCAAACTTTGACGAACCGCTAC
CGAAAGAATACTCGCAACAATATAGGCCGGAGGGATTTCGAGCTTGCAAA
GCGGGTGCTTGCAAGCTTTGACTTGGTCTCGATCACGGAGTGGATGGACT
GGAAGAACCAAACAAGCTACATCCAGCATGCGCTGGGGCAAGACGCAGAG
GAACTTCCGTACGGGCTGCTTCAGCGGAACAAGCTCTCCAAACCGAAAAA
TGATAGTGAGATCGACCGCGACTTTTTTGCTGAGCTGTGGCGGGCCAACA
CCTGGGATATACTCTTGTATGAATATGCTCAGAACCTAGTTCGGGAACGA
CTGGTTGCATTTCAGGATCACATGACGGACCTTGAACAATGGCGCACGGG
ATCAGAGAACGAAGGAGTTGCGACTGGCGCTCGAAAATCGCGGCGACAAC
AAACCGACCAATTAGAGTGTCGGGCGCCGCGGAACGACCCGCGCTGGAGG
AAGCGTAAGCAAGACTACTACAAGCCCAACAATGATTCCTATCTGTATGT
GATGCCGCGTTGTATGGATATGGGGGACGAAAAGCGGGGAGCATAAGACC
TGTGGGTAACTTCGTACATGCATGTGGAAAGTTTTTAGTAGCGCAACCCG
GTGAATACATAAGTCACTTAGGTGATAAAAGGGCGTACGAGACTGAGACA
ACATGGAAATTAGAGGATACTAAGGGGCAGATGCGCAAGTCGAGATGTGT
GTGTAACTGTGTGTTTGAGTGTGTGTGGAGTGTCTGTGAATATGGAGTGT
GGTAGGGAGGTTGGCCATTGTGTTGGATGACAGACGAGTGGCAGACACGT
ACGGTAAGAAATTAAAATACTGCGCCAAGGCGACATCGGTACGGAAGCAG
ACAAGGTGGTAAATGAGGGCGCGGGCGAAGCACAACACCTTCTGATGTGC
TACGGAGACCAATAAACCAAAATGTTCCTGCGACCAATCACAAAATAATA
ATGGGGAAAATATGAATAAGAAAAGAATCAAGACCAAATCGCGGTAACTG
C
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protein sequence of NO02G05160.1

>NO02G05160.1-protein ID=NO02G05160.1-protein|Name=NO02G05160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MTSPPATTYSWRSTPRRALVVMALMGMAYALVFAVIYSPQMASSTADSLL
NRGLRLQHTIASLRISSNTTASGPSAVAASHGEEEEDEHSSADLIGKNQN
VGNTRNDYEPLVGGSLWQALDAEMRARPDFEMLTSTKDVQPFRSPEEMAR
AQACFRQSKGYGYLLHMRKAGGSTLRGYLSSVVEKQRDHLIYVSEGLTFN
VSCFQDQGELVMVTSLRHPMARILSSYWYEGRYDSKPAYLEPGTSTALAA
AVVNQTEIEATLPASFSAWVRFVRRNDYIRWAWMSTRWVWYSVDSYYIQT
LTNRYRKNTRNNIGRRDFELAKRVLASFDLVSITEWMDWKNQTSYIQHAL
GQDAEELPYGLLQRNKLSKPKNDSEIDRDFFAELWRANTWDILLYEYAQN
LVRERLVAFQDHMTDLEQWRTGSENEGVATGARKSRRQQTDQLECRAPRN
DPRWRKRKQDYYKPNNDSYLYVMPRCMDMGDEKRGA*
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Synonyms
Publications