NO02G05100, NO02G05100 (gene) Nannochloropsis oceanica

Overview
NameNO02G05100
Unique NameNO02G05100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length352
Alignment locationchr2:1364941..1365292 +

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Properties
Property NameValue
DescriptionEKC/KEOPS complex, subunit Pcc1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1364941..1365292 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015419CTAG/Pcc1
Homology
BLAST of NO02G05100 vs. NCBI_GenBank
Match: XP_005855812.1 (hypothetical protein NGA_2086400, partial [Nannochloropsis gaditana CCMP526] >EKU20548.1 hypothetical protein NGA_2086400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.8 bits (325), Expect = 4.300e-27
Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = 0
Query:    1 MASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK 92
            MASL+DP+AT HHC I LH  + +KAQL+++VLE+D+ELQP K+ K+FAV+G+AL+V LVSCD KVLRVAVSSFYDMLTVALKTL +FD +
Sbjct:    3 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNE 93          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: EWM30171.1 (EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis gaditana])

HSP 1 Score: 129.8 bits (325), Expect = 4.300e-27
Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = 0
Query:    1 MASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK 92
            MASL+DP+AT HHC I LH  + +KAQL+++VLE+D+ELQP K+ K+FAV+G+AL+V LVSCD KVLRVAVSSFYDMLTVALKTL +FD +
Sbjct:   51 MASLKDPKATLHHCRISLHLTSSSKAQLIQDVLEVDEELQPDKVCKSFAVEGSALNVHLVSCDLKVLRVAVSSFYDMLTVALKTLLQFDNE 141          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: XP_009515900.1 (hypothetical protein PHYSODRAFT_469149, partial [Phytophthora sojae] >EGZ28625.1 hypothetical protein PHYSODRAFT_469149, partial [Phytophthora sojae])

HSP 1 Score: 70.5 bits (171), Expect = 3.100e-9
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:   16 IDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDE 91
            I L FP    AQ V   LE+DDELQP KI +T  V G  L V   + + ++LR AVSSFYDM  +A +TL EF E
Sbjct:    1 ISLTFPEEVDAQYVLQTLEVDDELQPDKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMGVLAARTLLEFKE 75          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: ETI43520.1 (hypothetical protein F443_11539 [Phytophthora parasitica P1569] >ETM43539.1 hypothetical protein L914_11061 [Phytophthora parasitica])

HSP 1 Score: 70.5 bits (171), Expect = 3.100e-9
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   14 CHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDE 91
            C I+L FP    AQ V   LE+D+ELQP KI +T  V G  L V   + + ++LR AVSSFYDM  +  + L EF E
Sbjct:   10 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEFKE 86          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: ETK83659.1 (hypothetical protein L915_11231 [Phytophthora parasitica] >ETL37076.1 hypothetical protein L916_11128 [Phytophthora parasitica] >ETL90218.1 hypothetical protein L917_11032 [Phytophthora parasitica] >ETO72258.1 hypothetical protein F444_11610 [Phytophthora parasitica P1976] >ETP13409.1 hypothetical protein F441_11459 [Phytophthora parasitica CJ01A1] >ETP41477.1 hypothetical protein F442_11433 [Phytophthora parasitica P10297])

HSP 1 Score: 70.5 bits (171), Expect = 3.100e-9
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   14 CHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDE 91
            C I+L FP    AQ V   LE+D+ELQP KI +T  V G  L V   + + ++LR AVSSFYDM  +  + L EF E
Sbjct:   10 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEFKE 86          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: XP_008916712.1 (hypothetical protein PPTG_19892 [Phytophthora parasitica INRA-310] >ETM97995.1 hypothetical protein PPTG_19892 [Phytophthora parasitica INRA-310])

HSP 1 Score: 70.5 bits (171), Expect = 3.100e-9
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   14 CHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDE 91
            C I+L FP    AQ V   LE+D+ELQP KI +T  V G  L V   + + ++LR AVSSFYDM  +  + L EF E
Sbjct:   99 CEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEFKE 175          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: XP_013733852.1 (uncharacterized protein BNAC03G15280D [Brassica napus] >CDY38721.1 BnaC03g15280D [Brassica napus])

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   14 CHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDE 91
            CH+D++F T   A +    L +D ELQP K+R+  +V    L V   + + ++LR ++S+F D+LT+A KT+QEF E
Sbjct:   11 CHLDVNFETEQHAFIAYTSLAVDKELQPGKVRRVMSVSNNKLSVHFEAIEARLLRASLSAFVDVLTLATKTIQEFRE 87          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: GAX99300.1 (Hypothetical protein PINS_007152 [Pythium insidiosum])

HSP 1 Score: 65.9 bits (159), Expect = 7.700e-8
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   12 HHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK 92
            + C I L FP    AQ     +++D+ELQP KI +T +V+G+ L V   + + ++LR AVSSFYDM  +  +TL EF ++
Sbjct:    7 YECEIALSFPEAEDAQHAMMTIQVDEELQPEKIHRTLSVNGSDLIVHFEATEIRLLRAAVSSFYDMALLVSRTLLEFKDE 86          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: XP_009119843.1 (PREDICTED: uncharacterized protein LOC103844784 [Brassica rapa] >XP_013726810.1 uncharacterized protein BNAA10G06410D [Brassica napus] >CDY49451.1 BnaA10g06410D [Brassica napus])

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-7
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 0
Query:    2 ASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK 92
            AS    +A    C +D++F +   A +V   L++D ELQP K+R+  +V    L V   + + + LR + S+F D+LT+A +T+QEF +K
Sbjct:    7 ASAPSNQAWDFSCKLDVNFESEEHALIVYTTLDVDKELQPDKVRRVMSVSDNKLSVHFEALEARFLRASFSAFVDVLTLATRTIQEFGQK 96          
BLAST of NO02G05100 vs. NCBI_GenBank
Match: XP_018454678.1 (PREDICTED: uncharacterized protein LOC108825825 [Raphanus sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-7
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 0
Query:    2 ASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAVDGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK 92
            A++   +A    C +D++F +   A +V   L++D ELQP K+R+  +V    L V   + + + LR + S+F D+LT+A +T+QEF +K
Sbjct:    3 ATVPSNQAWDFSCKLDVNFESEEHALIVYTTLDVDKELQPDKVRRVMSVSNNKLSVHFEALEARFLRASFSAFVDVLTLATRTIQEFGQK 92          
The following BLAST results are available for this feature:
BLAST of NO02G05100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855812.14.300e-2769.23hypothetical protein NGA_2086400, partial [Nannoch... [more]
EWM30171.14.300e-2769.23EKC/KEOPS complex, subunit Pcc1 [Nannochloropsis g... [more]
XP_009515900.13.100e-950.67hypothetical protein PHYSODRAFT_469149, partial [P... [more]
ETI43520.13.100e-946.75hypothetical protein F443_11539 [Phytophthora para... [more]
ETK83659.13.100e-946.75hypothetical protein L915_11231 [Phytophthora para... [more]
XP_008916712.13.100e-946.75hypothetical protein PPTG_19892 [Phytophthora para... [more]
XP_013733852.14.500e-840.26uncharacterized protein BNAC03G15280D [Brassica na... [more]
GAX99300.17.700e-841.25Hypothetical protein PINS_007152 [Pythium insidios... [more]
XP_009119843.11.000e-735.56PREDICTED: uncharacterized protein LOC103844784 [B... [more]
XP_018454678.11.000e-734.44PREDICTED: uncharacterized protein LOC108825825 [R... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007187NSK007187Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05100.1NO02G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05100.1NO02G05100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05100 ID=NO02G05100|Name=NO02G05100|organism=Nannochloropsis oceanica|type=gene|length=352bp
ATGGCGTCGTTGGAGGACCCCGAGGCGACGCGCCACCACTGgtaagtacc
cgacgaaagcgtcctacactccatactccttcaacccctccctccctccc
tcccctccccaccatagCCATATAGACCTCCACTTCCCTACGCCTGCGAA
GGCCCAACTGGTCAAAAACGTGTTGGAGATAGACGATGAATTGCAGCCGA
CCAAGATTCGGAAGACTTTTGCCGTGGACGGAACGGCGCTAGACGTGCTG
CTAGTGTCGTGTGACCCCAAAGTCTTGCGGGTGGCCGTATCTTCGTTCTA
CGACATGCTCACAGTGGCGCTCAAGACGCTACAGGAATTTGACGAAAAAT
AA
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protein sequence of NO02G05100.1

>NO02G05100.1-protein ID=NO02G05100.1-protein|Name=NO02G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MASLEDPEATRHHCHIDLHFPTPAKAQLVKNVLEIDDELQPTKIRKTFAV
DGTALDVLLVSCDPKVLRVAVSSFYDMLTVALKTLQEFDEK*
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Synonyms
Publications