NO02G04990, NO02G04990 (gene) Nannochloropsis oceanica

Overview
NameNO02G04990
Unique NameNO02G04990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length552
Alignment locationchr2:1339531..1340082 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1339531..1340082 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO02G04990 vs. NCBI_GenBank
Match: EWM30165.1 (hypothetical protein Naga_100096g6 [Nannochloropsis gaditana])

HSP 1 Score: 136.0 bits (341), Expect = 1.200e-28
Identity = 104/194 (53.61%), Postives = 114/194 (58.76%), Query Frame = 0 
Query:    5 TPPRSSIALRREQSYEEASVWEPRVSPTGRIFVGNSLVNNESSE-------------GSSNESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVYIAGTTDG--TDGGEVVFALARGVATVVTLSALALVMVLXXXAEAXXXXVAEKLGLAPVVVMVLAIMFVVGRQMGVPFQSLARVLVFLWAF 184
            TPPR     R E S+EEA+VW P  SPTGRIFVG    +N  S              GSSN+ST                                     S+YIAGT+ G    GGEVVFALARGVATVVTLSALAL    XXX   XXXXVAEK+GLAPVV++VL IMF+VGRQMGVPFQSLARVLVFLWAF
Sbjct:    7 TPPRIRGIFRGESSHEEANVWAPSRSPTGRIFVGAG--SNSGSHRMATVSPSPVDNGGSSNDST----PRSRDSQDGSVGRYYSESEGTDRSSRAVSSGIASIYIAGTSSGGSEGGGEVVFALARGVATVVTLSALALXXXXXXXXXXXXXXVAEKIGLAPVVILVLTIMFIVGRQMGVPFQSLARVLVFLWAF 194
The following BLAST results are available for this feature:
BLAST of NO02G04990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30165.11.200e-2853.61hypothetical protein Naga_100096g6 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007176NSK007176Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04990.1NO02G04990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575284gene_1091Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100096g6gene479Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04990.1NO02G04990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04990 ID=NO02G04990|Name=NO02G04990|organism=Nannochloropsis oceanica|type=gene|length=552bp
ATGGCACAAGACACGCCCCCCAGAAGCAGCATTGCTCTGCGGAGAGAGCA
GTCTTATGAGGAGGCAAGCGTCTGGGAGCCGCGCGTATCTCCCACAGGGC
GGATTTTCGTGGGGAACTCCCTCGTCAACAACGAGAGCAGCGAGGGGAGC
AGCAACGAGAGCACTCCGCGGAGCAGGGACAGCCAGGATCAGGATCAGGA
CATGAGCTTTGGACGCTTTAGGAGCGGAGAAAGGCAGGCGCGGAGTCGAG
GACATGGATCAGGACGGGGCATAGGGAGTGTGTACATTGCAGGAACGACG
GATGGCACGGATGGGGGAGAGGTGGTGTTTGCCCTAGCACGGGGGGTGGC
AACGGTGGTAACGCTATCGGCCTTGGCGCTTGTGATGGTGTTGTTGATCA
TTGCGGAGGCGGTGCTGATGGTAGTGGCAGAGAAGCTTGGCTTGGCTCCG
GTGGTGGTGATGGTACTGGCGATAATGTTTGTGGTGGGACGGCAGATGGG
GGTGCCATTTCAGTCGTTGGCAAGGGTGTTGGTGTTTTTGTGGGCATTTT
GA
back to top

protein sequence of NO02G04990.1

>NO02G04990.1-protein ID=NO02G04990.1-protein|Name=NO02G04990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MAQDTPPRSSIALRREQSYEEASVWEPRVSPTGRIFVGNSLVNNESSEGS
SNESTPRSRDSQDQDQDMSFGRFRSGERQARSRGHGSGRGIGSVYIAGTT
DGTDGGEVVFALARGVATVVTLSALALVMVLLIIAEAVLMVVAEKLGLAP
VVVMVLAIMFVVGRQMGVPFQSLARVLVFLWAF*
back to top
Synonyms
Publications