NO02G04980, NO02G04980 (gene) Nannochloropsis oceanica

Overview
NameNO02G04980
Unique NameNO02G04980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1908
Alignment locationchr2:1337204..1339111 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1337204..1339111 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22
Homology
The following BLAST results are available for this feature:
BLAST of NO02G04980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007175NSK007175Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04980.1NO02G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|150910gene_1090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04980.1NO02G04980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04980 ID=NO02G04980|Name=NO02G04980|organism=Nannochloropsis oceanica|type=gene|length=1908bp
ATGGCCCTGTTGCCATCCCTTGCGAGCATATACTCGGCCATGGCTTTAGG
CTGGCAGAGTTACAAGGTTCTGGCTGAGGAGAGCGTCGAAGAAGAGGAAG
AGAACGACATGGACATAGACGCTAGGCCCCCCTCCTATTCCCCCTGCTTC
GCCCCCTCCCCTTCTGCCCTTAGTCCCGACTTGCTGGCGGCTTGGACGGT
GCTGGGTGCTGTGCAGCTCTTCGAATGCACCCTGGAGTGGCTTGTGTCAT
GGCTGCCGTTCCACAATGTGGTCAAGGCAGCGTTCCTCATCGCCCTTACG
TTTCCCGAAACCCGCCTCCCGCACCTAGCGCTCACACGCGTGGTAGCGCC
CTACTCCGACGCTTTAAACGCTTTCTTTCAGACACACCTTCTTCCTGAAC
TGGTGCAGCTGGTCTTGGCATTGCCGCAACATTTTTTGGACGCCGTATTT
CCTATGTCCCATGACCATCCATCCTTTGCCGGGCCCCCTTTTTTGGAAAG
CCCTCGGCATCAACGACAGCAATATTATGCCCGGCGTCGTCGATCTTCCC
TCCTTTCCTTGTCAAAAGCAGGCGTAATCACATTCTCTCATGTGCAGGCT
ACCCCAACCCGTCGCTCTGCTTTTGAAAGGATCCTAGACACCTCTCCACC
ACCATCGTCCCCTCCTCGCGTGGTACCCCCGACGAACGTGACGCTTTATC
CTCCCTCTACGCCCGCTTTACCTTCTGCGTCCTGTGATATTTATCGATCA
TCGCCACGAGCATCACGGCAAAGGCCAGTTTCACCGCCCAAGCCCAATTA
CCCCCACCAAAGGCAAAAAGTGATGCGGCCGCACGAGCAACAGCAGCAGC
AGCAGCAGCAGCCACAACAACAGCCATCGCAACGGCAGCAGCAGCATCAA
GATAAACCACGAAATCCCTCCCCACCCCCCCCTCCCAAGCCGCAGCACAA
ACGCCCTGTCTCACCACCCTTCCATCTCTCCCCTCCTCTCCCATCATTGT
CAAAAGTAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAACAGCAACAGCCAAACCTGAGCACTTTTCGTC
GTCAAATGTTAGTGTCCGACATCGTCACCTCTCTGGATTGACTGCGATTG
CCTCCTCCCCTTCATCCCTTCCTCCCTCCTCGTCTTCCCCTTGTGGACAG
AGATCCATCTCCATGCCTCGTGCGGATTCAGGCGAGGAGAAAGTAAACAG
CAGCAGCAGCAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCA
GCAGGAGCAGCAGCAGCAGTGGTAGTAGCAGTAGTGGCAGTAGTAGCAAC
AGTAGACGCAGACGCCCTTCTTCTCTCCCTCTTCTTTCTTCTGGCTTGAC
AAGAGCAGGAGCAGCTGTTGCCCCTTTCTCCCGATCAAGACCCTCCTCTA
CCCCACGCACGGATTTACGCAAAGAGAGCACTCGCACCAGCAGCAGCAGC
ACCACCACCCATCCCTCTTCCCTCCCACATTCCTTCAGTAAGATGGGAGA
CGAGGAGGGAGGAGAAAGAGGACGAGGAGGAGGAGGACGAGGAGGAAGGG
GCAGGGGGGGTAACTCGCGGTGGGCAGAGAAAATGCAAGTATCCAGCGAG
GAAAGTCGGGCACCCTCTCCTCGTGTGTCAAGACTAGCCCCATCGGGAGG
AGAGAGGATGAAGTGTAGGTGGGAAGAACGATGAAGGCCGGGCTTCAGCA
GCAGTAGCAGTAGCAGCAGTAGCAGCAGCGATAAGAGCCAATGGACGAAA
CGCCGAAGACGAGCCTGTGAGGAGTTTCCTCTGTTTCACACTTCCTCAGC
ACGTACGGCCTAATCCTCGGGCTTCCTCTTTTATCTCCTCCTCCTCCTCC
TCCTCCTC
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protein sequence of NO02G04980.1

>NO02G04980.1-protein ID=NO02G04980.1-protein|Name=NO02G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MALLPSLASIYSAMALGWQSYKVLAEESVEEEEENDMDIDARPPSYSPCF
APSPSALSPDLLAAWTVLGAVQLFECTLEWLVSWLPFHNVVKAAFLIALT
FPETRLPHLALTRVVAPYSDALNAFFQTHLLPELVQLVLALPQHFLDAVF
PMSHDHPSFAGPPFLESPRHQRQQYYARRRRSSLLSLSKAGVITFSHVQA
TPTRRSAFERILDTSPPPSSPPRVVPPTNVTLYPPSTPALPSASCDIYRS
SPRASRQRPVSPPKPNYPHQRQKVMRPHEQQQQQQQQPQQQPSQRQQQHQ
DKPRNPSPPPPPKPQHKRPVSPPFHLSPPLPSLSKVATSAAAAAAAAAAA
AAATAATATAKPEHFSSSNVSVRHRHLSGLTAIASSPSSLPPSSSSPCGQ
RSISMPRADSGEEKVNSSSSSSNSSSSSSSSSSSRSSSSSGSSSSGSSSN
SRRRRPSSLPLLSSGLTRAGAAVAPFSRSRPSSTPRTDLRKESTRTSSSS
TTTHPSSLPHSFSKMGDEEGGERGRGGGGRGGRGRGGNSRWAEKMQVSSE
ESRAPSPRVSRLAPSGGERMKCRWEER*
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Synonyms
Publications