NO02G04960, NO02G04960 (gene) Nannochloropsis oceanica

Overview
NameNO02G04960
Unique NameNO02G04960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4226
Alignment locationchr2:1329338..1333563 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1329338..1333563 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G04960 vs. NCBI_GenBank
Match: EWM30158.1 (hypothetical protein Naga_100096g4 [Nannochloropsis gaditana])

HSP 1 Score: 161.4 bits (407), Expect = 1.300e-35
Identity = 242/793 (30.52%), Postives = 301/793 (37.96%), Query Frame = 0 
Query:    1 MTGGPKQATRRTTGRATGLCTNSGGDAHPSSLKTGITVQELKQITAMRMAQMRHTSPLSVPAITESS---------SPPYPTAAPVGVPVECPLALSPPMPNSTHPLLSQAANLSSSQQALAPDCLYG-AAGELVNQSGSGNIEVGHELRVSSSSSISISGNTASRGI----------------VSLPSASIAVDG-----------KNKTLSSSFSSAWAKPASGSGLLSTS-SSLDSTGS--SSPVYGLSPNKQVELNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPHSLTVQELKELTRMRLAREAGIITPFSAPREGGTEVSDTIDIINNAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEFTSVHGSVETAASRSTNHSSVSPRSPTTAGLGSLFPHPI------CSSSSPRHLDNSSLAAAFE-------------VGLGSNQGGPXXXXXXXXXLYHDCDDVIVGQKGGMEGERADVTSIASP-REEKIMGATTER-VGDESGMKKASEEKETLIRTSCGSRSKNSCQTIDMRHGFNKFNCNSTVIPEAT-GAAAS-SMRVMIPSPYNLTLATLTRTSSDDLCMPSLRQRSISSTSSSAEMEDLPRQMAEYVLLTPKSPGVPLHAHHDYGXXXXXXXXXXXXXXXXXXXXALLPPHLQHPHQKCVTAPPGLGYGEEM-------EWAAMDSKLKRIRSSERLLQLKEEVEE 724
            M  GP     R+  R  GL   + G     +L +GITVQELKQITA+RMAQ+    P S+P  T  +           P P AAP           S P  + THPL+SQAA LS +  +     L G +  +LV QS  G++  G+E  + S   +S        G                   + S S   D              KT   S S+ W   ASGSG LSTS SSL+S     SS   G SP                                                                             LPHSLTVQELKELTRMRLAREAGI+T      EGG +                                                                       P    ++     ++  ST  ++     PT+A    + P PI       SSS P    + S     E             +GL   +  P              +    G  GG+E + A V  +ASP RE K  G    R V  +      S++ E        S   +S            F+  +  +   T G  AS  MR+M+PSP  + +    R SSDDLCMPSLRQRSISSTSSSAEMEDLPR++AEYVLLTPKSPG PL A+                         LLPPHLQHPHQK V A  G G G E+       +  A+D +++RIRSSERLLQLKEEVEE
Sbjct:    1 MMAGP-----RSQSRGHGL-AQADGLTSKGTLPSGITVQELKQITALRMAQL--CQPPSLPHATHQTPRSTGLSQEDEPAPRAAP-----------SLPGLSRTHPLVSQAATLSRASHSHTAVSLKGISTHDLVQQSPGGSMG-GNEKALESREGLSTRSCPTGYGTPLGLRNESKRESENREKPVSSVSFGTDRACLDLSLGCRLDKKTAGCSTSTPWEAGASGSGQLSTSPSSLESDAQSLSSTNRGTSPGLASSRGGG------------------------------------------------------------NSSIPTSSLPHSLTVQELKELTRMRLAREAGIVT-LPGTMEGGPDT-----------------RLSPEEGRCQYAPKHGQGPRTMRQSTHPHRCRGPSPSTSSTPASPMNSPMVSRPPSPQLYPMKGQSSESSTEETATXXXLPTSA----VAPSPIPCGGAPLSSSCPASSPSFSFPGVPECANPPGTRDSVPNMGLRDQERRPELDSEGQGGEQSVGEAEWEGANGGLEKQEARV--VASPGREVKSEGTKCRRPVATQREAWVVSDDAE----APTSSLPSHSPSYDPASRELPAFSFGAPSLSRGTLGLGASLGMRLMVPSPRTMAMGAHVRGSSDDLCMPSLRQRSISSTSSSAEMEDLPREVAEYVLLTPKSPGSPLMANALSFPGNSGQYGSAASAGASRPVLTLLPPHLQHPHQKRVAA-VGEGVGGEVAGSEDKRDGKALDVQMRRIRSSERLLQLKEEVEE 684
[Close]
BLAST of NO02G04960 vs. NCBI_GenBank
Match: XP_005853710.1 (hypothetical protein NGA_0475300, partial [Nannochloropsis gaditana CCMP526] >EKU22650.1 hypothetical protein NGA_0475300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.7 bits (234), Expect = 1.500e-15
Identity = 74/162 (45.68%), Postives = 91/162 (56.17%), Query Frame = 0 
Query:  488 GQKGGMEGERADVTSIASP-REEKIMGATTER-VGDESGMKKASEEKETLIRTSCGSRSKNSCQTIDMRHGFNKFNCNSTVIPEAT-GAAAS-SMRVMIPSPYNLTLATLTRTSSDDLCMPSLRQRSISSTSSSAEMEDLPRQMAEYVLLTPKSPGVPLHAH 646
            G  GG+E + A V  +ASP RE K  G    R V  +      S++ E        S   +S            F+  +  +   T G  AS  MR+M+PSP  + +    R SSDDLCMPSLR RSISSTSSSAEMEDLPR++AEYVLLTPKSPG PL A+
Sbjct:   30 GANGGLEKQEARV--VASPGREVKSEGTKCRRPVATQREAWVVSDDAE----APTSSLPSHSPSYDPASRECPAFSFGAPSLSRGTLGLGASLGMRLMVPSPRTMAMGAHVRGSSDDLCMPSLRLRSISSTSSSAEMEDLPREVAEYVLLTPKSPGSPLMAN 185
The following BLAST results are available for this feature:
BLAST of NO02G04960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30158.11.300e-3530.52hypothetical protein Naga_100096g4 [Nannochloropsi... [more]
XP_005853710.11.500e-1545.68hypothetical protein NGA_0475300, partial [Nannoch... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007173NSK007173Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04960.1NO02G04960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575273gene_1087Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100096g4gene477Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04960.1NO02G04960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04960 ID=NO02G04960|Name=NO02G04960|organism=Nannochloropsis oceanica|type=gene|length=4226bp
GGCCTGTCCGTATCTGCGCGTATGGGAGGGAAAAGGAGAAAGGAGTAAAG
GAAGGATTGCGGCTGCGAGAAGGGCCTGTCTGGTCTATCCCTGTATGTAG
ATTATTGTCCCCGCCAAATCCCAGAGAAAAGGAAAGAAAGACAAGAAAAA
ACGTACGATGGGGTTTTCCGGGACGAGTCTCGCATGATTCTCCTTGGTCT
TTCTTTCTTTGCGTCCAATGGCGGTGTTAACGGGATGCTTTGTTGCCAAG
GTCTAGACTCTGTTGACGGAGGTCTGGCACAAGGTCTTCTTCGCCGCTTT
GTAGGCTTCGTAGATATCCGGTCATAAACAGCGAAGGAAAATCCAAGTTT
CTTCGCCTCCAAAAACCGCCCATAACCATTTGCGGTGCAATATCAATGAC
CAACACCAGAAAGTGCACATCAAGGTGCAGCAGTTTGTTGCCCCTCGATG
GACGAAACGAATAGAACATCCTTCGATTTGGCGCACGCATTTCATACGAT
ACCGCGCGGAAGGCCCGGGTCTGCCCTTCGTAAGTCATTCCCTTTGGCCA
CCACGGTGACGCATGTTTGAGACGCAGAGATGAGCAGTCTGCTCTTTTCG
CAGACAGCAGGCGATCCCCGTTGATGGAATATCGAAGCTGCGTGAGTCAA
GGTCCCGCATCCCAACCAGCTCAGAGCTCGCTTTTCCAACACACAAAATA
AGACTTTGGTTCGGAATCGGTTATGAATGGAAACTTGGCTTCGACAAGGT
CTCTCTCGAACCGCCCGCAGATTATTTGAGTCAGCTCCAGTGAGACGATG
GAATTTCAACTGAAGTTTCCAACAACAAGCATTGATGCGTCGCTACTGTC
GTTGTAGTTCTGAGTCTTCTTTTACTCATGTCATGAGGAAGGCTTTATGC
ATAGCACATATTGCCCTTGTTGTCGCCTGTGGCATTTACTTTGCCTCGTG
GCTCTCCCGCTGCAGACCCTTATGCGGGCCATCAGGGCTCAAATTGTTCT
GTATGACTCAATCGGGCAGTGGGGGCGAAGAAGGACATGCGCCGCCGGGC
CATCAAAGAGAGAGTTAGTGTGTACACATGCCACTTTCTGGACCGCGTGG
TCTTGCGCAGCAGTAACGCTCAACAACCGAGAGGCACGTGCCACGTCCTC
TCAGGTGCACGACATTTGCGTTACAGCCATCATATTTTCCCCCTGCGCCG
GTCGTGTGGTTCCAAATTCGACTCACGGGTGCTCGAAAAAGGAGGCGCTT
CTTTTTAGACTTTTGAGTCGTCTTATTCTACCAAACTCACGTGAATAAAC
ATACACGGACAGGTCAACGGCAGGACTCCCATGACGCAGCCGGAGCAGCC
CTGGCAGCAGCTCTGAAAAGCCCCAAAGAGAGAAGCGCCTCACCGCCTTC
ATTTTCGTCGTACTTAACTGGGTCAGAAATACGAAGCAAGAAAGGCCCCG
CACACACGGACCACAACAGCAGCCAGAGCAACCAAGACCACCTCTATCTG
CTGATCGAGCACTCAAGAAGATGACGGGGGGGCCTAAGCAAGCCACTCGA
CGCACCACCGGCCGCGCCACTGGCCTGTGCACCAACAGTGGTGGCGACGC
CCATCCATCATCTTTGAAAACAGGCATCACAGTCCAAGAGCTCAAGCAAA
TCACAGCCATGCGCATGGCACAAATGCGGCATACTTCCCCATTGTCCGTT
CCGGCCATCACCGAATCTTCATCCCCCCCCTACCCCACTGCAGCGCCCGT
AGGCGTTCCCGTAGAATGCCCCTTGGCGCTGTCCCCACCAATGCCCAATA
GCACACACCCTTTGCTATCTCAAGCGGCCAATCTATCATCGTCCCAGCAA
GCCCTCGCTCCAGATTGTTTATACGGAGCGGCCGGTGAACTTGTGAATCA
ATCTGGGAGCGGGAACATAGAAGTCGGACACGAGCTGCGCGTCAGCAGCA
GCAGCAGCATCAGCATCAGCGGGAACACAGCGAGCAGGGGCATCGTGTCG
TTGCCAAGTGCTTCCATTGCGGTGGACGGCAAGAACAAGACTCTTTCCTC
GTCTTTCTCCTCGGCATGGGCCAAGCCCGCGAGTGGAAGTGGACTGCTGA
GCACGTCATCCTCCCTGGACTCCACCGGCAGCAGCAGTCCGGTGTACGGG
TTGTCGCCTAACAAACAAGTAGAGCTGAACAACAACAGAAACAACACCAA
CCACAACGAGAGCAACAACAATAGCAGCAGCAGCAAAAGCTGCAGCAGCA
GCAGCAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAATAGCAGCAGCAACAACAAGAAAAGCGACAATAGTAGCCG
CAGCAACAGCAACAGCAACAACAGCGGCAGTAGTGGTAGCTTGCCGCACA
GTCTGACAGTGCAAGAATTGAAGGAACTAACCCGCATGCGTCTAGCGCGG
GAGGCAGGTATCATCACTCCCTTTTCTGCGCCGAGAGAAGGCGGGACCGA
GGTTAGCGATACCATTGACATCATCAACAACGCCATCAACAACTATAACA
ATAACAACACTCAGCGTCACAATCAAAAAAACAACCACGGCCACAAGAAT
CATCGCCAGCAGCAACAGCAGCAGCAGCAGCGATGCCGAGGGCGCTCTTC
TTCCATTGCCCCCTCCCCCTCTTCCTCCTCCTCAAGCCCACCCTCGACAT
CGCAACCCCCCAGCCCGGAATTTACTTCTGTGCATGGATCCGTGGAAACA
GCAGCGTCTCGGTCAACAAATCATAGCTCTGTATCTCCCCGTTCCCCTAC
CACCGCGGGACTCGGCTCGTTGTTTCCCCATCCTATCTGTTCTTCCTCCT
CCCCCCGGCACTTGGACAACAGCAGCCTAGCCGCTGCTTTCGAGGTCGGG
CTGGGAAGCAACCAGGGGGGACCACAGCAGCAGCAACAGCAACACCGTCA
CTTGTACCACGATTGCGACGATGTGATTGTCGGACAAAAGGGAGGAATGG
AAGGAGAAAGAGCCGATGTGACCAGCATTGCTAGTCCGCGGGAGGAGAAG
ATTATGGGGGCCACAACGGAGAGAGTTGGAGATGAAAGTGGGATGAAAAA
GGCGTCTGAAGAAAAGGAGACATTGATAAGGACGAGCTGCGGCAGCAGAA
GCAAGAATAGCTGCCAGACTATCGATATGCGCCACGGCTTCAACAAATTC
AACTGCAATTCCACCGTCATTCCCGAGGCCACCGGGGCTGCTGCAAGCTC
CATGCGTGTCATGATCCCCTCGCCCTATAACCTCACTCTAGCCACTCTCA
CCCGCACCAGCAGCGACGATCTCTGCATGCCTTCGCTTCGTCAGCGTTCT
ATCTCCTCTACCTCCTCTTCCGCCGAAATGGAAGACCTTCCGCGCCAAAT
GGCTGAGTACGTCCTCCTCACACCCAAATCACCCGGGGTACCTCTCCACG
CCCACCACGATTATGGCAACAGCAGCAGCAGTGGCGGCGGCGGCAGCAGC
AGTCTCAGCAGCAGCAGCCCTTTCCTTGCTCTCCTACCTCCTCACTTGCA
GCATCCCCATCAAAAATGCGTAACGGCTCCTCCAGGGTTGGGGTATGGAG
AAGAGATGGAGTGGGCAGCGATGGATAGCAAGTTGAAGAGAATTCGGTCG
TCGGAGAGACTGCTGCAATTGAAGGAGGAGGTGGAGGAAGCGATGCGGAA
GAAGGCCACGCGCGCGCAGCAGCAGCAGCAGCAGATTGATGGGAAGGACG
AAGAGGGAGTGGAGAAAGTGGAGGAGAATGAGATTGAGGAAGAGGAGAAG
GACGAGGAGGGGAAGCAGCAACAGGAACTTCAAGTGGAGGTGGAGGTGGA
GGATAAGGAGGTTGATGCCATGGAGCACTATAAGTGCAACCGACTTTCTG
TCATTGTCTCGACTGTGGAGCAGAACGACGACTCGACCTCAAGCTGCAAC
CCGTCTTCCACTTATTCCTCCCTCGGGTCATCTTCTTCTCTTTCCTTTAA
GAGGGTGTCCAGAGATGGGATAAGTCCTACTGCCCAGCAGCTCGACATGA
TGGCGGGTGGTTTCGGCATGGCTACCTCTTCTGGTGGGTGCACGCAAAGC
TGTCGGCGGAGCTCTTTTGTCATCCACCAGCCGCAGTCCCAGTCGTTCAA
TTTGAAGCACCAGCACCAGCACCAGCAAGGAAAGGAACAGACATCTATGT
ATAGGTGGCTACTTCCTATTTTGTAG
back to top

protein sequence of NO02G04960.1

>NO02G04960.1-protein ID=NO02G04960.1-protein|Name=NO02G04960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=902bp
MTGGPKQATRRTTGRATGLCTNSGGDAHPSSLKTGITVQELKQITAMRMA
QMRHTSPLSVPAITESSSPPYPTAAPVGVPVECPLALSPPMPNSTHPLLS
QAANLSSSQQALAPDCLYGAAGELVNQSGSGNIEVGHELRVSSSSSISIS
GNTASRGIVSLPSASIAVDGKNKTLSSSFSSAWAKPASGSGLLSTSSSLD
STGSSSPVYGLSPNKQVELNNNRNNTNHNESNNNSSSSKSCSSSSSNSSS
SSSSSSSSSSSSSNSSSNNKKSDNSSRSNSNSNNSGSSGSLPHSLTVQEL
KELTRMRLAREAGIITPFSAPREGGTEVSDTIDIINNAINNYNNNNTQRH
NQKNNHGHKNHRQQQQQQQQRCRGRSSSIAPSPSSSSSSPPSTSQPPSPE
FTSVHGSVETAASRSTNHSSVSPRSPTTAGLGSLFPHPICSSSSPRHLDN
SSLAAAFEVGLGSNQGGPQQQQQQHRHLYHDCDDVIVGQKGGMEGERADV
TSIASPREEKIMGATTERVGDESGMKKASEEKETLIRTSCGSRSKNSCQT
IDMRHGFNKFNCNSTVIPEATGAAASSMRVMIPSPYNLTLATLTRTSSDD
LCMPSLRQRSISSTSSSAEMEDLPRQMAEYVLLTPKSPGVPLHAHHDYGN
SSSSGGGGSSSLSSSSPFLALLPPHLQHPHQKCVTAPPGLGYGEEMEWAA
MDSKLKRIRSSERLLQLKEEVEEAMRKKATRAQQQQQQIDGKDEEGVEKV
EENEIEEEEKDEEGKQQQELQVEVEVEDKEVDAMEHYKCNRLSVIVSTVE
QNDDSTSSCNPSSTYSSLGSSSSLSFKRVSRDGISPTAQQLDMMAGGFGM
ATSSGGCTQSCRRSSFVIHQPQSQSFNLKHQHQHQQGKEQTSMYRWLLPI
L*
back to top
Synonyms
Publications