NO02G04930, NO02G04930 (gene) Nannochloropsis oceanica

Overview
NameNO02G04930
Unique NameNO02G04930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr2:1323694..1324770 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1323694..1324770 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
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BLAST of NO02G04930 vs. NCBI_GenBank
Match: XP_005853462.1 (hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526] >EKU22899.1 hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.5 bits (389), Expect = 6.400e-34
Identity = 72/109 (66.06%), Postives = 90/109 (82.57%), Query Frame = 0 
Query:    4 LIAELAEALRTSKVVQLSEDGTGARSRVVRSTIIAREMPSDVTESEIRALFSKWGEAVIDVRCEHGLWYIRFSGEDDARSACQQMNSTPFRGQSLRLRIRSEVGQAIYG 113
            ++  L EA++ S++VQLS+DG GAR RV RSTIIARE+P DVTE ++RALF KW EAV++VRCEHGLWYI+ +GEDDA++A Q +N TP  GQ LRLRIR EVGQA+YG
Sbjct:  534 VVRVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPDVTEPDVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYG 642
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BLAST of NO02G04930 vs. NCBI_GenBank
Match: EWM30191.1 (la-related protein 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 2.400e-33
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 0 
Query:    4 LIAELAEALRTSKVVQLSEDGTGARSRVVRSTIIAREMPSDVTESEIRALFSKWGEAVIDVRCEHGLWYIRFSGEDDARSACQQMNSTPFRGQSLRLRIRSEVGQAIYG 113
            ++  L EA++ S++VQLS+DG GAR RV RSTIIARE+P  VTE+++RALF KW EAV++VRCEHGLWYI+ +GEDDA++A Q +N TP  GQ LRLRIR EVGQA+YG
Sbjct:  124 VVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYG 232
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BLAST of NO02G04930 vs. NCBI_GenBank
Match: XP_013759406.1 (hypothetical protein AMSG_02487 [Thecamonas trahens ATCC 50062] >KNC47470.1 hypothetical protein AMSG_02487 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 65.5 bits (158), Expect = 3.900e-7
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 0 
Query:    6 AELAEALRTSKVVQLSEDGTGARS--RVVRSTIIAREMPSDVTESEIRALFSKWGEA-VIDVRCE-HGLWYIRFSGEDDARSACQQMNSTPFRGQSLRLRIRSE 106
            A L +A+R S  V LSED T  +    + R+TII RE+P DVTE++++A+F       V+ V+ E    WY++F+ ED   S    + S  + G+ +R RI++E
Sbjct:   69 ATLLQAMRASDAVVLSEDETKVKPVFELKRNTIIIRELPEDVTEAQVKAIFDDPAAGKVVSVQAEAQNHWYVKFADEDITFSTFMWLRSQKYDGKPIRCRIKTE 172
The following BLAST results are available for this feature:
BLAST of NO02G04930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853462.16.400e-3466.06hypothetical protein NGA_0456500, partial [Nannoch... [more]
EWM30191.12.400e-3365.14la-related protein 4, partial [Nannochloropsis gad... [more]
XP_013759406.13.900e-737.50hypothetical protein AMSG_02487 [Thecamonas trahen... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04930.1NO02G04930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|150761gene_1086Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04930.1NO02G04930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04930 ID=NO02G04930|Name=NO02G04930|organism=Nannochloropsis oceanica|type=gene|length=1077bp
ATGGCGAGTCTCATAGCTGAGTTGGCGGAAGCCTTGCGAACGTCTAAGGT
GGTGCAACTTTCGGAGGATGGAACTGGAGCCCGATCGCGTGTGGTGCGTA
GCACCATAATTGCCCGGGAGATGCCATCGGATGTAACGGAGTCGGAAATT
CGTGCTTTGTTTTCGAAGTGGGGGGAGGCGGTGATTGACGTACGGTGTGA
GCATGGCTTGTGGTACATAAGATTCTCGGGAGAGGATGATGCCAGATCGG
CGTGTCAGCAAATGAACAGCACTCCCTTTCGAGGGCAGTCGTTAAGGTTA
AGAATAAGATCAGAAGTCGGTCAGGCGATATACGGCTCTCTTGTCCAGCA
GGCCGGTGGTGGTGGAGGAGGAGGAGGAGGGTTGGGGGGTGCGACGACGG
TGATGCCGACGATTGGATTGGGAGGGAGGGAGGGAGGGCACGGGATGGCG
GGTGCGCCGTCGTCGCCGAGAATCTCGGGGGGGATGATGATGCCGCCTGG
AGGAAGGCAGACGGGGGGTGTGGGGGGTTTGCCTCATCTAAGTCTGTTCC
AATTACAGAGCGGGGGAGGGCATATGCAGCAACAATCACCATCACAACAC
CAGCAGCAGGGTGGACATGCTCACCATGCGCATCATTTGGCGATGTCCAT
ACCACCACAACAGATGCCGCATGGTGCTTATATGATCTCTCCAGGTGGTA
CCGGTGTGCCCTTCATCATGGATGGCCAGCATATTCTGGGACCCCTCCCC
CCTGGAGTAGGAGGGGGAGGACGGGAGGGAGGAAGGGGAGGCGGAGGCCG
GGGCAGGGGCGGAGGAGGGTTGTATATTCCGAGGGGAGCGCCATATCTGA
GTTTGGGAGGGCAAGGAGGAGGACCATTGCCTATGATGCATCCACCGCCG
TCGCAGCAGCAGCAGCCGGGAGGGGTGGGGCAGCAGTCGTCGCAAGGGCG
GTATCACCCACAGCAGCAGCAGCAGCCGGGTATCGTGAGACCCCGAGGAG
CATCATCTCAGTTCTACGCGGGCGGGCCGGTAATGATGCAAGGAGGGGGG
GACAAGGAGGAGGGGGCATGCCTATGA
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protein sequence of NO02G04930.1

>NO02G04930.1-protein ID=NO02G04930.1-protein|Name=NO02G04930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MASLIAELAEALRTSKVVQLSEDGTGARSRVVRSTIIAREMPSDVTESEI
RALFSKWGEAVIDVRCEHGLWYIRFSGEDDARSACQQMNSTPFRGQSLRL
RIRSEVGQAIYGSLVQQAGGGGGGGGGLGGATTVMPTIGLGGREGGHGMA
GAPSSPRISGGMMMPPGGRQTGGVGGLPHLSLFQLQSGGGHMQQQSPSQH
QQQGGHAHHAHHLAMSIPPQQMPHGAYMISPGGTGVPFIMDGQHILGPLP
PGVGGGGREGGRGGGGRGRGGGGLYIPRGAPYLSLGGQGGGPLPMMHPPP
SQQQQPGGVGQQSSQGRYHPQQQQQPGIVRPRGASSQFYAGGPVMMQGGG
DKEEGACL*
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Synonyms
Publications