NO02G04780, NO02G04780 (gene) Nannochloropsis oceanica

Overview
NameNO02G04780
Unique NameNO02G04780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2172
Alignment locationchr2:1289664..1291835 -

Link to JBrowse

Properties
Property NameValue
Descriptioncircadian clock associated 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1289664..1291835 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: XP_008610748.1 (hypothetical protein SDRG_06728 [Saprolegnia diclina VS20] >EQC35986.1 hypothetical protein SDRG_06728 [Saprolegnia diclina VS20])

HSP 1 Score: 67.4 bits (163), Expect = 2.100e-7
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:  403 SNIGTEKPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKL 463
            S++   K  +KRERWTQ EH  F++G+ M+GR+W KI   +  KT  Q+R HAY YF KL
Sbjct:  169 SDVQDGKDAKKRERWTQEEHARFMEGLNMYGRKWKKIQTHVKTKTAVQVRTHAYGYFAKL 228
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: XP_021983251.1 (protein LHY-like [Helianthus annuus] >XP_021983252.1 protein LHY-like [Helianthus annuus] >XP_021983253.1 protein LHY-like [Helianthus annuus] >OTG15800.1 putative myb domain, plant, Homeodomain-like protein [Helianthus annuus])

HSP 1 Score: 67.4 bits (163), Expect = 2.100e-7
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:  393 NTSSSSNGSISNIGTEKP---KQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKLETPSDSHSLSSGGLVWKGLASYNANTNIENVPPPHRTPPSTLT 506
            + SS+++G   NI T KP    ++RERWT+ EH+ FL+ ++++GR W +I   +  KT  QIR HA  +F KLE  + +  +  G  +   +          N P P +T P T T
Sbjct:    3 SNSSAASGETLNIKTRKPYTITKQRERWTEDEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAVAKGIPIGQALDMEIPPPRPKRK-PNYPYPRKTDPKTHT 117
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: XP_009830003.1 (hypothetical protein H257_06476 [Aphanomyces astaci] >ETV80079.1 hypothetical protein H257_06476 [Aphanomyces astaci])

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-7
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 
Query:  409 KPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKL 463
            K  +KRERWTQ EH  F++G+ M+GR+W KI   +  KT  Q+R HAY YF KL
Sbjct:  225 KDAKKRERWTQDEHARFMEGLNMYGRKWKKIQTHVKTKTAVQVRTHAYGYFAKL 278
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: BAM67028.1 (late elongated hypocotyl-like [Chrysanthemum seticuspe f. boreale])

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-7
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = 0 
Query:  396 SSSNGSISNIGTEKP---KQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKLETPSDSHSLSSGGLVWKGLASYNANTNIENVPP-PHRTP 501
            S S+G I NI T KP    ++RERWT+ EH++FL+ ++++GR W +I   +  KT  QIR HA  +F KLE  +          V KG+    A  +IE  PP P R P
Sbjct:    3 SYSSGEIHNIKTRKPYTITKQRERWTEDEHNSFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEA----------VAKGVPIKQA-LDIEIPPPRPKRKP 100
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: OQR98698.1 (hypothetical protein ACHHYP_08263 [Achlya hypogyna])

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-7
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 
Query:  409 KPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKL 463
            K  +KRERWTQ EH  F++G+ M+GR+W KI   +  KT  Q+R HAY YF KL
Sbjct:  165 KDAKKRERWTQEEHARFMEGLNMYGRKWKKIQTHVKTKTAVQVRTHAYGYFAKL 218
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: OQS04649.1 (hypothetical protein THRCLA_20829 [Thraustotheca clavata])

HSP 1 Score: 66.6 bits (161), Expect = 3.600e-7
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 
Query:  409 KPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKL 463
            K  +KRERWTQ EH  F++G+ M+GR+W KI   +  KT  Q+R HAY YF KL
Sbjct:  242 KDAKKRERWTQEEHARFMEGLNMYGRKWKKIQTHVKTKTAVQVRTHAYGYFAKL 295
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: CCA17827.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-7
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:  402 ISNIGTEKPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKL 463
            I  I T K +++RERWT+ EH  F++G+  +GR+W KI  L+  KT  Q+R HAY YF KL
Sbjct:   82 IPAIHTAKIRRQRERWTEREHALFMKGLLAYGRKWKKIQTLVQTKTVVQVRTHAYGYFAKL 142
[Close]
BLAST of NO02G04780 vs. NCBI_GenBank
Match: XP_008860823.1 (hypothetical protein H310_00021 [Aphanomyces invadans] >ETW09412.1 hypothetical protein H310_00021 [Aphanomyces invadans])

HSP 1 Score: 65.5 bits (158), Expect = 7.900e-7
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:  388 MTNIKNTSSSSNGSISNIGTEKPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQIRVHAYSYFQKL 463
            +T+I  +S+  +G +      K  +KRERWT  EH  F++G+ M+GR+W KI   +  KT  Q+R HAY YF KL
Sbjct:  233 LTSIDASSTGMHGDL------KDSKKRERWTHEEHARFMEGLNMYGRKWKKIQTHVKTKTAVQVRTHAYGYFAKL 301
The following BLAST results are available for this feature:
BLAST of NO02G04780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_008610748.12.100e-750.00hypothetical protein SDRG_06728 [Saprolegnia dicli... [more]
XP_021983251.12.100e-734.48protein LHY-like [Helianthus annuus] >XP_021983252... [more]
XP_009830003.12.700e-753.70hypothetical protein H257_06476 [Aphanomyces astac... [more]
BAM67028.13.600e-740.37late elongated hypocotyl-like [Chrysanthemum setic... [more]
OQR98698.13.600e-753.70hypothetical protein ACHHYP_08263 [Achlya hypogyna... [more]
OQS04649.13.600e-753.70hypothetical protein THRCLA_20829 [Thraustotheca c... [more]
CCA17827.16.100e-749.18conserved hypothetical protein [Albugo laibachii N... [more]
XP_008860823.17.900e-742.67hypothetical protein H310_00021 [Aphanomyces invad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04780.1NO02G04780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523144gene_1071Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04780.1NO02G04780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04780 ID=NO02G04780|Name=NO02G04780|organism=Nannochloropsis oceanica|type=gene|length=2172bp
ATGTCAGCCCTCCCTGCCTCAGGTGAAGAGACACGTCACGTGGCAGGGCA
AGCCACTTCGGCAACCATCCCCCCCCCCTCCCGAATCGCTGGTCCCGTGC
ACATGCGCCTGGAGCAGCCTATGAGCTCTCCCAGCGCTGCCACTCTTAGC
GTGCCCGCCCTGCCTCATGCCCCTTCTCTGGCGTCTCCGGTCCCGACTGC
ACCTGCAGCGGCACAACAGATAAATGTGTACTTGGCTGCCATGTTTTATC
AACAACTTATGGCCCATCAGCAGCGGCAGATGCAAGAATTGGCGGCCTTC
AGCCCCCTCAACTCTCCGCGCCAGGAGGAGCAACTGACGATCATCTCTAT
CCAGGGTTCTCCGCGCAAGCACCAGCACCAGCAACATCAGCAACAACAGC
AGCCACCTCAGCAGCCACAAGTCCCTTCCCCGTCCCTTCGACACTTGCAA
GCCGCAGCCGCTGCCTATGCCGCCGCTTTGGCCGCATCAAGCAGTTCTTC
AGCGTTCCCAACTCGTGCCCCTTGCCTGCCTCCCGTGATTACGGCCGCGC
CCGTGCCACAATTGCACCCTCTCAACTTGAAAATTCCCTACCGCCACAGC
CACGGCGATCTCTACAGGTGCCCCAATCCCACCTCTTTCCAAGCACGTCT
GGAAACAGTCGTGTCGCCATCCGCCGTCTTAGCTTCTCTTTCGATCGACG
GACCTGGGCACAGGCAAGTGAAGTTTGCGCCTACGCACCCCAAGCAGCAG
CAGCAGCAGCAGCAGCCGCCACAACCGCAACCAATGCCACAACAGGGGGC
TTCATTCTTATCACAGGGGAAGGAAGGGGAGGAGGACGAGGACGAAGAGG
GCTCTGTGGTACCGGCGACAAATAAAAGCGAGCGCAGCATCAGCGAGGAA
ATGGGGAGGAAGATGGGAGACGACGATGTGATGGAGGACAAGGAGAACCA
GGATCCAGACAAAGCCTCCTCAGTGGCAATAACCCATTCTCGTCCTTCCT
CCTCTTCTTCGTCCGCTCCTGTTCCTCCAACCACCACCACAGACGTCAGC
GGCTGCAGCACCAATACAGCTACCACGACCAGTAGCAACAGCAGCATCAG
CAGCGTTTTGGCCTGCGTGAGCCCCATGGCTGTCTGTTCGAAGACGGGCT
TCGAGCAGTGCATGACTAACATTAAAAACACCAGCAGCAGCAGTAACGGC
AGCATCAGCAACATTGGCACGGAGAAACCCAAGCAAAAACGCGAACGGTG
GACGCAGGGAGAGCACGACACCTTCCTCCAAGGCATGCAGATGTTCGGGC
GTCGATGGACGAAGATCCATCGTTTGCTTCCTCACAAGACTCCGAGCCAA
ATCCGCGTCCATGCGTATTCGTACTTCCAAAAGCTCGAAACGCCCTCCGA
CTCTCACTCTCTCTCTTCCGGGGGATTGGTTTGGAAGGGGCTTGCTAGTT
ATAACGCAAATACCAACATTGAAAATGTCCCTCCTCCCCACCGGACCCCT
CCTTCAACCCTTACTTTTGCTGCTGCTGCTACTGCTCCTCCTTCCCCTGC
TGGTTCTGCTGCGCCTGTTGCGTTTACCTTGTCGAGCAGCACGAGCACTC
TGCCTACCTGCATCCCATCTCCTCGCTCCCACCCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTTCTTATCTTCTTCGTCTTCCCCCTCCTCAACCCC
TATCGCTGCCATGACCTTATGTCCACATGATCCTTCTATGCTCGCTCGTT
CCTGGTCAGTCTTGAGTGAGAACGGTGATGATGTATTCGAAGGTGCAGGG
ATCCTTCAAAGCTTGCGTCGCTCTGATCAAGATGCTTGGGTAAAGGAAGA
GCGGCTTTATGGGGTGAGGGAAGAAAGAGAGGAGGAAAAGGGGGAGGAAG
AGAAATTTTCAAGTTTGAAGACACCGACGGGGCAGAAGCGAATTAGAGAG
GACAAAGGGGAGGAGAAGCATGAGTATTCCTCTTACGCAATTTCGTCTTC
TTCGTGCACGTCTCCCAAGGTCGAGGAGGAGGATGAGGAGGATGGAATGG
GAGAAGCCAGAGCGGACGAGCCCACCAGAAAGGTGTTTACGTGTCATGTG
ACCTCTCCGCGGGATCATCAGATGATGGACATGCTGGCTGCGGTGGTGCA
ACAGCAGCAGCAGCAGGTGTAG
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protein sequence of NO02G04780.1

>NO02G04780.1-protein ID=NO02G04780.1-protein|Name=NO02G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=724bp
MSALPASGEETRHVAGQATSATIPPPSRIAGPVHMRLEQPMSSPSAATLS
VPALPHAPSLASPVPTAPAAAQQINVYLAAMFYQQLMAHQQRQMQELAAF
SPLNSPRQEEQLTIISIQGSPRKHQHQQHQQQQQPPQQPQVPSPSLRHLQ
AAAAAYAAALAASSSSSAFPTRAPCLPPVITAAPVPQLHPLNLKIPYRHS
HGDLYRCPNPTSFQARLETVVSPSAVLASLSIDGPGHRQVKFAPTHPKQQ
QQQQQPPQPQPMPQQGASFLSQGKEGEEDEDEEGSVVPATNKSERSISEE
MGRKMGDDDVMEDKENQDPDKASSVAITHSRPSSSSSSAPVPPTTTTDVS
GCSTNTATTTSSNSSISSVLACVSPMAVCSKTGFEQCMTNIKNTSSSSNG
SISNIGTEKPKQKRERWTQGEHDTFLQGMQMFGRRWTKIHRLLPHKTPSQ
IRVHAYSYFQKLETPSDSHSLSSGGLVWKGLASYNANTNIENVPPPHRTP
PSTLTFAAAATAPPSPAGSAAPVAFTLSSSTSTLPTCIPSPRSHPSSSSS
SSSSSFLSSSSSPSSTPIAAMTLCPHDPSMLARSWSVLSENGDDVFEGAG
ILQSLRRSDQDAWVKEERLYGVREEREEEKGEEEKFSSLKTPTGQKRIRE
DKGEEKHEYSSYAISSSSCTSPKVEEEDEEDGMGEARADEPTRKVFTCHV
TSPRDHQMMDMLAAVVQQQQQQV*
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Synonyms
Publications