NO02G04760, NO02G04760 (gene) Nannochloropsis oceanica

Overview
NameNO02G04760
Unique NameNO02G04760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length873
Alignment locationchr2:1285950..1286822 -

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Properties
Property NameValue
DescriptionBED zinc finger ;hAT family dimerisation domain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1285950..1286822 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR008906HATC_dom_C
Homology
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_018945446.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Cyprinus carpio])

HSP 1 Score: 99.4 bits (246), Expect = 2.000e-17
Identity = 71/192 (36.98%), Postives = 95/192 (49.48%), Query Frame = 0 
Query:   16 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKAITTLKDEGMYTDRAEKQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            I+S+LDPR K L      + L   A  +  +EL +A+         TDRA  Q AGG            E   S T   SA   +          +LG         + +  EL +++R    P +  P DWW+ N   FP LAKLAR+YLC+PATS   ER FSAAGLT++ LR+RL+S  V M++FL  N
Sbjct:   15 ISSMLDPRHKHLGFLTPTQRL---AANVKLVELGEAVG--------TDRAAIQQAGG-----------VEAALSDTDEGSANTEVATSQSSAMAQLLGDHYTTQCE-AGIEAELQNFLRETPPPLNCTPTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTSDHVNMLIFLNKN 183
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_016344224.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Sinocyclocheilus anshuiensis])

HSP 1 Score: 97.4 bits (241), Expect = 7.600e-17
Identity = 70/192 (36.46%), Postives = 94/192 (48.96%), Query Frame = 0 
Query:   16 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKAITTLKDEGMYTDRAEKQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            I+S+LDPR K L      + L   A  +  +EL +A+         TDRA  Q AGG            E   S T   SA   +          +LG         + +  EL +++R    P +  P DWW+ N   FP LAKLAR+YLC+PATS   ER FSAAGLT++ LR+RL+   V M++FL  N
Sbjct:    2 ISSMLDPRHKHLGFLTPTQRL---AANVKLVELGEAVG--------TDRAAIQQAGG-----------VEAALSDTDEGSANTEVATSQSSAMAQLLGDHYTTQCE-AGIEAELQNFLRETPPPLNCTPTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFLNKN 170
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_014437168.1 (PREDICTED: calcyclin-binding protein isoform X1 [Pelodiscus sinensis] >XP_014437169.1 PREDICTED: calcyclin-binding protein isoform X1 [Pelodiscus sinensis] >XP_014437170.1 PREDICTED: calcyclin-binding protein isoform X1 [Pelodiscus sinensis])

HSP 1 Score: 95.5 bits (236), Expect = 2.900e-16
Identity = 71/192 (36.98%), Postives = 90/192 (46.88%), Query Frame = 0 
Query:   16 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKAITTLKDEGMYTDRAEKQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            IASLLDPR K L  +  P   V     LL L     I  L   G     AE +GA         D         +TSA+                +LG    +  N   V +EL DY R P     + PL+WW+ N + FP LAKLA  YLC+P TS   ER FS AGLT++ LR+RL+ + V M++FL  N
Sbjct:  585 IASLLDPRHKHLR-FLSPVVQVAAKAKLLELASRLEIEELPSAG-----AELRGA-------EPDELEEPPLKKKTSAIV--------------MLLGEGYTEKENEDAVEKELEDYFREPCLSLESSPLEWWKMNGQRFPRLAKLANSYLCIPGTSVPAERVFSNAGLTVNRLRSRLTPEHVNMLIFLNKN 749
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_009563038.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Cuculus canorus])

HSP 1 Score: 91.3 bits (225), Expect = 5.400e-15
Identity = 64/204 (31.37%), Postives = 103/204 (50.49%), Query Frame = 0 
Query:    9 ILRDTFAIASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKAITTLKDEGMY---TDRAEKQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLNWD 210
            +L +   IAS LDPRFK+L         ++ +   LR EL   + T+  +  +   T  A       D  V+  D  + +  +S T++ S  D L               ++   N+ E++Q+L +YI  P+   ST PLDWW+ N+R FPA+A L RQYL +PAT+    + F+A   T+ + R  L+ + ++ I+FL  N+D
Sbjct:  731 VLENPAVIASFLDPRFKEL-------RFLRPS---LRSELHNCVKTMLSQVFHPPSTSTAPFWVPSSDSKVEGRDAGSYKERSSSTASQSIYDIL-------------LGKDPTENMPEIHQQLENYIVEPLCKRSTDPLDWWKNNERRFPAVAHLGRQYLAIPATAVLPHQAFAAGESTLEHRRAILAPENLDQIIFLHQNFD 911
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_014461102.1 (PREDICTED: zinc finger BED domain-containing protein 1 [Alligator mississippiensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  111 VLGTAREQLLNLSEVNQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct:  720 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 816
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: KYO28671.1 (hypothetical protein Y1Q_0000834 [Alligator mississippiensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  111 VLGTAREQLLNLSEVNQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct: 2338 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 2434
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: KYO28672.1 (hypothetical protein Y1Q_0000834 [Alligator mississippiensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  111 VLGTAREQLLNLSEVNQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct: 2337 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 2433
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: KYO28673.1 (hypothetical protein Y1Q_0000834 [Alligator mississippiensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  111 VLGTAREQLLNLSEVNQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct: 2335 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 2431
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_006039079.1 (PREDICTED: zinc finger BED domain-containing protein 1-like isoform X1 [Alligator sinensis])

HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  111 VLGTAREQLLNLSEVNQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLA+ YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct:  780 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLAKSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 876
[Close]
BLAST of NO02G04760 vs. NCBI_GenBank
Match: XP_006131337.1 (PREDICTED: zinc finger BED domain-containing protein 1-like isoform X2 [Pelodiscus sinensis])

HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14
Identity = 69/192 (35.94%), Postives = 95/192 (49.48%), Query Frame = 0 
Query:   16 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKAITTLKDEGMYTDRAEKQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 208
            IA+LLDPR K +        +V+ A     LEL   +   +    + DR   +GA  D  ++         +  RTSA+     LG G          T +E   N   V +EL DY+R P       PL+WW+ N + FP L KLA  YLC+P TS   E  FS+AGLTI+ LR+RL+ + V M++FL  N
Sbjct:  391 IAALLDPRHKHM---RFLSPVVQIAAKSKLLELAARLEIEEPPRAWADR---RGAETDEPMEPA-------SKKRTSAIVM--LLGEGY---------TKKENEEN--AVEKELEDYLREPCPSLECSPLEWWKVNAQRFPRLGKLANSYLCIPGTSVPAECVFSSAGLTINRLRSRLTPEHVNMLIFLNKN 556
The following BLAST results are available for this feature:
BLAST of NO02G04760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_018945446.12.000e-1736.98PREDICTED: zinc finger BED domain-containing prote... [more]
XP_016344224.17.600e-1736.46PREDICTED: zinc finger BED domain-containing prote... [more]
XP_014437168.12.900e-1636.98PREDICTED: calcyclin-binding protein isoform X1 [P... [more]
XP_009563038.15.400e-1531.37PREDICTED: zinc finger BED domain-containing prote... [more]
XP_014461102.11.200e-1447.96PREDICTED: zinc finger BED domain-containing prote... [more]
KYO28671.11.200e-1447.96hypothetical protein Y1Q_0000834 [Alligator missis... [more]
KYO28672.11.200e-1447.96hypothetical protein Y1Q_0000834 [Alligator missis... [more]
KYO28673.11.200e-1447.96hypothetical protein Y1Q_0000834 [Alligator missis... [more]
XP_006039079.12.700e-1446.94PREDICTED: zinc finger BED domain-containing prote... [more]
XP_006131337.12.700e-1435.94PREDICTED: zinc finger BED domain-containing prote... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04760.1NO02G04760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04760.1NO02G04760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04760 ID=NO02G04760|Name=NO02G04760|organism=Nannochloropsis oceanica|type=gene|length=873bp
ATGGCGACGCGCTTCCATTGGGACATTCTGCGGGACACCTTTGCAATCGC
CTCCCTGCTCGACCCCCGTTTCAAAAAGCTCGCCGATTACCATGTACCCG
AGCACCTCGTCAAGGATGCATGGGGGCTGCTTCGCCTAGAACTGGACAAG
GCCATTACGACGCTCAAGGATGAGGGCATGTACACCGACAGGGCGGAGAA
GCAGGGCGCAGGGGGCGACATCGTCGTGGACAGCGGGGACCCTTTCGCCG
CAGAGAACACGGCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACGCCCTT
GGCAACGGTGCGGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCAAGGGA
GCAGCTTCTTAACCTTTCCGAGGTGAACCAGGAGTTGGCCGATTACATCC
GCATGCCAGTCGAGCCTTCTAGCACCTGCCCACTGGACTGGTGGCGGTGC
AACAAGCGGTTCTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTATCTGTG
CGTGCCCGCAACCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGCAGGCC
TGACGATCAGCAACCTTCGGACGCGCCTCAGCAGCAAGACTGTCGAGATG
ATTCTATTCCTGCGGCTGAATTGGGACAACTCGCTGTACACGGTGGAGCT
TGGGGGCGCAGATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGGGGGAG
GGGGGGAAGGCGACGCGATGACAGATGCTGCGGACGAAGGGGAGGAGGGG
GGAGATCTTCTGGATGACGATGAAGAAGGCGCCGCTCTTCAACCCATGGG
CTTCGGGGAGGACGATGACTTCGCTTGGCTCAATGAGGACCTCTTCGACG
TCGACTTTGATATCGAAAGCTAA
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protein sequence of NO02G04760.1

>NO02G04760.1-protein ID=NO02G04760.1-protein|Name=NO02G04760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MATRFHWDILRDTFAIASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDK
AITTLKDEGMYTDRAEKQGAGGDIVVDSGDPFAAENTASRTSAVSAGDAL
GNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRC
NKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEM
ILFLRLNWDNSLYTVELGGADLEEVTRAEEGGGGGEGDAMTDAADEGEEG
GDLLDDDEEGAALQPMGFGEDDDFAWLNEDLFDVDFDIES*
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Synonyms
Publications