NO02G04640, NO02G04640 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G04640 vs. NCBI_GenBank
Match: EWM30222.1 (cral trio domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 285.4 bits (729), Expect = 1.300e-73 Identity = 135/166 (81.33%), Postives = 152/166 (91.57%), Query Frame = 0
Query: 4 VDLKNMTVPEDVIKELGDKIAEHPTLSHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
VDL+NMTVPEDV+ ELG KIA+HPTLSHHSSPAVLSRMLLARHL V DAYVLWE WAAWRE+++P LI+EA VAPQLAVQTVS+ G DK+GR CV+LRTRNH+PGQFP E+MLRLTI+VLETST+RSVKTSGTGYITA+WDC+GQG+RNLD ALAT KPGII IMK
Sbjct: 3 VDLQNMTVPEDVMAELGAKIAQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMK 168
BLAST of NO02G04640 vs. NCBI_GenBank
Match: EWM27704.1 (CRAL-TRIO domain protein [Nannochloropsis gaditana]) HSP 1 Score: 101.3 bits (251), Expect = 3.600e-18 Identity = 55/158 (34.81%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 15 VIKELGDKIAE---HPTLSHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
+ +EL KI E + ++ +L+R+L+AR+L V +A+ +W AWR+ QP ++ E AP L+ VSI G DK GR C+ RNHI + LR + +LE +T S +T+ G+I + D +G G +N+D L KPG++ I++
Sbjct: 111 IFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTA-DGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQ 267
BLAST of NO02G04640 vs. NCBI_GenBank
Match: XP_001432825.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK65428.1 unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 85.1 bits (209), Expect = 2.700e-13 Identity = 38/153 (24.84%), Postives = 88/153 (57.52%), Query Frame = 0
Query: 17 KELGDKIAEHPTLSHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
+E+ + ++E+ + +S+ L R+L+AR + DA+ W+ W WR++ + I+ + ++ ++ G DK G C++++ + H PG+ E ++R +Y+++ ++ T GTG I+ +WD +G ++N D+++ T I+++++
Sbjct: 20 EEIRNLVSEN-LIQKYSNEDHLVRLLIAREWKINDAFEQWKRWVEWRKQYRADEIKIEEIQKEIDLRKAFWNGVDKLGNPCLIIKAKRHFPGESNPETLIRFFLYMIDQGIQQADMT-GTGRISVIWDREGVAFKNFDSSMFTIMKKIVTLVQ 170
BLAST of NO02G04640 vs. NCBI_GenBank
Match: XP_001437007.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK69610.1 unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 80.9 bits (198), Expect = 5.000e-12 Identity = 36/148 (24.32%), Postives = 80/148 (54.05%), Query Frame = 0
Query: 22 KIAEHPTLSHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
K+ + +S+ L R+L+AR V D++ W+ W WR++ + I+ + ++ + G DK G C++++ + H PGQ E ++R +Y+++ ++ +GTG I+ +WD +G +N D+++ T ++++++
Sbjct: 31 KLVREDLVQKYSNEDHLIRLLIAREWKVNDSFDQWKRWVEWRKQYRADDIKIEEIQQEINLNKAFWNGSDKLGNPCLVVKAKRHFPGQSNPETLIRFFLYMIDQGIQKA-DQAGTGKISVIWDREGVTSKNFDSSMFTIMKKMVTLVQ 177
BLAST of NO02G04640 vs. NCBI_GenBank
Match: OMJ83991.1 (hypothetical protein SteCoe_14977 [Stentor coeruleus]) HSP 1 Score: 79.0 bits (193), Expect = 1.900e-11 Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 0
Query: 18 ELGDKIAEHPTLSHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
EL I E +++ +L R+L AR L VQ AY +W+ W WR++ + I E + + G+D GR C+++R R H P QF LEE +R IY++E + TG + ++D N D L G+ ++++
Sbjct: 17 ELTKLIHEITDEEKYTNQDMLIRVLRARDLKVQPAYEMWQKWYRWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFALEETMRYVIYLVEQG-VKLADEKHTGQMCVIYDRGDISSANKDGNLIELGKGLAAMLQ 167
BLAST of NO02G04640 vs. NCBI_GenBank
Match: OMJ80316.1 (hypothetical protein SteCoe_19471 [Stentor coeruleus]) HSP 1 Score: 77.0 bits (188), Expect = 7.300e-11 Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 0
Query: 16 IKELGDKIAEHPTLSHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWD 145
+K + I+++P +++ + L R+L AR +V A +W+ W WR + I E + P + G+DK GR C+++R R+H P F EE LR +IY+ E + + T G+G I ++D
Sbjct: 17 LKHTVENISDNPVFTNNDA---LLRILRAREFNVDAALAMWQRWVDWRISYRADSITEEEMMPHIVKGKAFFHGKDKQGRICLIIRVRHHYPQDFTPEETLRYSIYLAECA-VKLADTEGSGQICIIYD 141
BLAST of NO02G04640 vs. NCBI_GenBank
Match: XP_001013324.1 (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >EAR93079.1 divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210]) HSP 1 Score: 75.9 bits (185), Expect = 1.600e-10 Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 0
Query: 40 RMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
R+L AR V+ A+ +W+ W WR + + I+E VA +L G DK G C++++ + H PG + +LR +Y+LE ++ + +GTG ++ +WD +G +N D+ L + + IM+
Sbjct: 59 RLLWAREFKVEKAFEMWKKWVDWRIDFKADEIKEEDVASELQSGKAFWHGMDKQGNPCLVVKVKYHRPGVSSQDVVLRYFLYLLEEGISK-CEQAGTGKVSVIWDREGFDKKNFDSNLFSTFKKLNQIMQ 187
BLAST of NO02G04640 vs. NCBI_GenBank
Match: KRX01853.1 (Thioredoxin-like fold [Pseudocohnilembus persalinus]) HSP 1 Score: 71.6 bits (174), Expect = 3.100e-9 Identity = 36/132 (27.27%), Postives = 69/132 (52.27%), Query Frame = 0
Query: 38 LSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAKPGIISIMK 170
L R +AR + ++A+ LWE WA W + + + E + +L + + G DK G ++++ R HIP Q PL+E + IY++ + + + G+ IT +WD +G +N D+ + ++ +M+
Sbjct: 61 LVRQFIARDYNEKNAFKLWEKWANWMLQNKADDLLEKDILNELKIGKAFMNGYDKKGNPIIIIQVRKHIPKQVPLDETKKFFIYMINLALEEADRI-GSERITLLWDRKGFTSKNYDSDFLSLGKELVGMMQ 191
BLAST of NO02G04640 vs. NCBI_GenBank
Match: XP_001032158.1 (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >EAR84495.1 divergent CRAL/TRIO domain protein (macronuclear) [Tetrahymena thermophila SB210]) HSP 1 Score: 68.9 bits (167), Expect = 2.000e-8 Identity = 45/168 (26.79%), Postives = 84/168 (50.00%), Query Frame = 0
Query: 2 TVVDLKNMTVPEDVI--KELGDKIAE--HPTL--------SHHSSPAVLSRMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAAL 158
T+ LKN ++ KEL KI + H L ++ R+L A+ V+ A+ +W+ W +WR + I+E +A + G+DK C++++ +NHIPG + M++ ++++E + +S + +GTG I+ +WD +G +N+D L
Sbjct: 15 TIPQLKNSLNEAQILKFKELKQKIIDEAHTLLCPKDVTKFERYTEDNQAVRLLWAQDFHVEKAFAMWQKWISWRLKIGADDIKEEDIAQEYQRGRAFWHGKDKQNNPCLVVKVKNHIPG-VSSDIMVKYVLFLIEEAIQKS-EEAGTGMISIIWDREGFSIKNVDYKL 180
BLAST of NO02G04640 vs. NCBI_GenBank
Match: XP_004990722.1 (hypothetical protein PTSG_08474 [Salpingoeca rosetta] >EGD77378.1 hypothetical protein PTSG_08474 [Salpingoeca rosetta]) HSP 1 Score: 65.1 bits (157), Expect = 2.900e-7 Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = 0
Query: 12 PEDVIKELGDKI-AEHPTLSHHSSPAVLS-----RMLLARHLSVQDAYVLWEAWAAWREEQQPHLIEEAHVAPQLAVQTVSIAGQDKNGRACVLLRTRNHIPGQFPLEEMLRLTIYVLETSTTRSVKTSGTGYITAVWDCQGQGYRNLDAALATAK 162
PEDV ++L +++ EHP L+ + LS R L+AR SV AY + WR+E QP I V +A+ + I G+DK GR V+ + N + G + +R ++VLE+ ++K G +W GYR + L AK
Sbjct: 17 PEDV-RQLEERVWKEHPDLARSAHEGFLSEETYRRYLVAREGSVDKAYDMIVGSLKWRKEWQPESITPEEVETDIAMCKMYIQGKDKQGRPVVIFKPANDVDGVGSILTKVRFYVWVLES----AIKQMAPGVSQMLWIVDMNGYRVGPSDLKRAK 167 The following BLAST results are available for this feature:
BLAST of NO02G04640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 12
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G04640 ID=NO02G04640|Name=NO02G04640|organism=Nannochloropsis oceanica|type=gene|length=3041bpback to top protein sequence of NO02G04640.2 >NO02G04640.2-protein ID=NO02G04640.2-protein|Name=NO02G04640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=200bpback to top protein sequence of NO02G04640.1 >NO02G04640.1-protein ID=NO02G04640.1-protein|Name=NO02G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bpback to top Synonyms
Publications
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