NO02G04610, NO02G04610 (gene) Nannochloropsis oceanica

Overview
NameNO02G04610
Unique NameNO02G04610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1932
Alignment locationchr2:1244664..1246595 -

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Properties
Property NameValue
DescriptionElongation of fatty acids protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1244664..1246595 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002076ELO_fam
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Homology
BLAST of NO02G04610 vs. NCBI_GenBank
Match: AQX92136.1 (delta-6 fatty acid elongase [Nannochloropsis oceanica])

HSP 1 Score: 556.6 bits (1433), Expect = 4.300e-155
Identity = 275/276 (99.64%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKPVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA 277
            MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNA+PVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA
Sbjct:    1 MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAQPVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA 276          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: EWM30230.1 (elongation of very long chain fatty acids [Nannochloropsis gaditana])

HSP 1 Score: 489.6 bits (1259), Expect = 6.500e-135
Identity = 239/274 (87.23%), Postives = 253/274 (92.34%), Query Frame = 0
Query:    3 AALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKPVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA 277
            A  LADYQKTC +L+ AIFKWADPAG M+K+PTRTWPLAGLDVALAIAA YL+ VFVGS +MK+A+PVKLYGLQFFYNISQVALCSYMCIEA IQAYRNNYT LPCEPFN TNPP+ PLLWLFY+SK+FDFADTVFIILGKKW+QLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMY YYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIY+L VGCK F  QITKLYLGYILSLLVLFLNFYFK+YS  KPNGKKP  KKA
Sbjct:   15 AGYLADYQKTCAELTDAIFKWADPAGTMLKSPTRTWPLAGLDVALAIAAAYLVFVFVGSIVMKDAQPVKLYGLQFFYNISQVALCSYMCIEAVIQAYRNNYTLLPCEPFNTTNPPLGPLLWLFYISKIFDFADTVFIILGKKWSQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYAYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYILGVGCKSFPTQITKLYLGYILSLLVLFLNFYFKTYSSPKPNGKKP--KKA 286          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: XP_005820376.1 (hypothetical protein GUITHDRAFT_98336 [Guillardia theta CCMP2712] >EKX33396.1 hypothetical protein GUITHDRAFT_98336 [Guillardia theta CCMP2712])

HSP 1 Score: 307.8 bits (787), Expect = 3.500e-80
Identity = 150/249 (60.24%), Postives = 186/249 (74.70%), Query Frame = 0
Query:   25 DPAGAMVK-APTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKPVK--LYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKK 271
            D +G  +K  PT+ W L     A AI+A Y  +V VG  +M   + +    Y ++F YNI QV LCSYM +EA I AYR+NY  +PC PF   NPPIAP+LWLFY+SKV DF DT FI+LGKKW QLSFLHVYHH+TIF++YW+N+N GYDGDI+LT++LNG IHTVMYTYYF+SMHTKDIWWKKYLT+ Q+IQF+TMN QAI+LL   C+ F  ++T+LYL YI+SL  LFLNF+ +SY  V P  KK
Sbjct:   26 DDSGKAIKPLPTQGWFLTDFASAFAISAIYFALVIVGRIVMIPFRSLDKLTYPIRFVYNILQVMLCSYMTLEAGILAYRHNYNLVPCNPFKTENPPIAPVLWLFYISKVLDFMDTFFIVLGKKWEQLSFLHVYHHLTIFMIYWMNVNVGYDGDIYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTMMQMIQFITMNGQAIWLLQSNCQTFPRKVTQLYLVYIMSLFALFLNFFIRSY--VSPKSKK 272          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: XP_009831338.1 (hypothetical protein H257_07493 [Aphanomyces astaci] >ETV79497.1 hypothetical protein H257_07493 [Aphanomyces astaci])

HSP 1 Score: 299.7 bits (766), Expect = 9.500e-78
Identity = 146/262 (55.73%), Postives = 185/262 (70.61%), Query Frame = 0
Query:    1 MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKP-VKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSY 262
            MA+AL  +++   +   + +  WADP+G   + P   WPLA    A AIA  YL  V VG+ +MK+  P +    LQF YN  Q+ALCSYMCIEA IQAYR+NY+ +PC  FN T+P +  ++WLFY+SK+ DFADT FII GKKW QLSFLHVYHH+TIF +YWLN  A YDGD++LT+ILNG IHT+MYTYYF+S HTK IWWKKYLT  Q+IQF+TMN QA+ ++   C+G    I  LYL YI SL  LF++F+  SY
Sbjct:    1 MASALWTEFKALTSPYESIVLDWADPSGQYKQNPMVEWPLADFSSAAAIALAYLAFVIVGTLVMKSGVPALNTSALQFVYNPIQIALCSYMCIEAGIQAYRHNYSPMPCNAFNTTSPVMGNVMWLFYISKILDFADTFFIIAGKKWKQLSFLHVYHHLTIFSIYWLNFRALYDGDVYLTIILNGFIHTIMYTYYFVSSHTKTIWWKKYLTTLQLIQFVTMNVQAVLIISKECQGPPQNIAVLYLVYIQSLFWLFMHFFITSY 262          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: XP_008871334.1 (hypothetical protein H310_07682 [Aphanomyces invadans] >ETW00309.1 hypothetical protein H310_07682 [Aphanomyces invadans])

HSP 1 Score: 299.3 bits (765), Expect = 1.200e-77
Identity = 147/262 (56.11%), Postives = 182/262 (69.47%), Query Frame = 0
Query:    1 MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKPV-KLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSY 262
            MAAAL  +++   +   + +  WADP+G   + P   WPLA    A AIA  YL  V VG+ +MK   P      LQF YN  Q+ALCSYMCIEA IQAYR+NY+ +PC  +N T+P +  ++WLFY+SK+ DFADT FII GKKW QLSFLHVYHH+TIF +YWLN  A YDGDI+LT+ILNG IHT+MYTYYF+S HTK IWWKKYLT  Q+IQF+TMN QA+  +   CKG    I  +YL YI SL  LF++F+  SY
Sbjct:    1 MAAALWTEFKALTSPYESLVLDWADPSGQYKQNPMVDWPLADFSSAAAIALGYLAFVMVGTLVMKAGVPAFNTSALQFVYNPIQIALCSYMCIEAGIQAYRHNYSVMPCNSYNTTSPVMGNVMWLFYISKILDFADTFFIIAGKKWKQLSFLHVYHHLTIFSIYWLNFRALYDGDIYLTIILNGFIHTIMYTYYFVSAHTKTIWWKKYLTTMQLIQFVTMNVQAVMTISKECKGTPQNIAIMYLVYIQSLFWLFMHFFITSY 262          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: CBJ26568.1 (Fatty acid elongase [Ectocarpus siliculosus])

HSP 1 Score: 296.6 bits (758), Expect = 8.100e-77
Identity = 140/221 (63.35%), Postives = 167/221 (75.57%), Query Frame = 0
Query:   56 IVFVGSAMMKNAKPVKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKKA 277
            +V VG  +M +  P+  Y ++F YN+ Q+ LCSYMC+EA + AYRN Y  LPC PF+A NPP A LLWLFYVSKV DF DT+FI+L K W QLSFLHVYHH TIFL YWLN+NAGYDGD++LT++LNG IHTVMYTYYF+SMHTKDIWWKKYLTL Q+IQF+ M  QA+YLL  GC  + P+I  +Y GYILSLL LF  FY  SY+      KKP +K A
Sbjct:    1 MVTVGPKVMADMSPIDSYPVRFVYNVVQIILCSYMCVEAFMIAYRNGYPVLPCAPFDAENPPAANLLWLFYVSKVLDFMDTIFIVLKKSWRQLSFLHVYHHCTIFLFYWLNVNAGYDGDVYLTIVLNGFIHTVMYTYYFVSMHTKDIWWKKYLTLMQMIQFVCMTTQALYLLTTGCTSYPPRIVVVYAGYILSLLFLFAQFYVNSYT------KKPTAKNA 215          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: XP_009037003.1 (hypothetical protein AURANDRAFT_53701 [Aureococcus anophagefferens] >EGB08274.1 hypothetical protein AURANDRAFT_53701 [Aureococcus anophagefferens])

HSP 1 Score: 295.0 bits (754), Expect = 2.400e-76
Identity = 143/245 (58.37%), Postives = 177/245 (72.24%), Query Frame = 0
Query:   20 IFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKP---VKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSY 262
            I  WA     +   P + W L     A++IA  YL  V VGS +M+ A P   +KLYG+ F YNI+QV LCSYMCIEA I A R+N+  L C  ++A +PP+A +LWLFY SKV DF DT FI++GKKW QLSFLHVYHH TIFL YWLNL+  YDGDI+LT++LNGAIHT+MYTYYF+SMHT+DIWWKKYLTL Q++QF  MNAQAIY+   GC    P++T +Y  YI+SL +LFL F+  SY
Sbjct:   11 IIAWALVGSDVTDEPVKGWALGSFTTAISIAGAYLAFVLVGSLIMR-AYPGDGIKLYGVAFLYNIAQVMLCSYMCIEAVIVAKRSNFN-LVCNSYDAKHPPMANVLWLFYASKVLDFVDTFFIVIGKKWKQLSFLHVYHHTTIFLFYWLNLHVNYDGDIYLTIVLNGAIHTIMYTYYFVSMHTRDIWWKKYLTLAQLVQFTCMNAQAIYMFVTGCSATPPRVTAIYFVYIISLFILFLQFFMSSY 253          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: AIG53905.1 (delta6-C18 elongase protein, partial [Pythium sp. BCC53698])

HSP 1 Score: 292.4 bits (747), Expect = 1.500e-75
Identity = 145/276 (52.54%), Postives = 182/276 (65.94%), Query Frame = 0
Query:    1 MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKP-VKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVSKK 276
            MA  L A Y++   +       W DP+G    +P +T P A    A AI   YL  V VG+ +MK   P +K   LQF YN  QV LCSYMC+EA IQAYRN Y+  PC  +NA NP +  +L++FY+SK+ DF DT FII+GKKWNQLSFLHVYHH+TIF +Y++N    YD DI+ T+ILNG IHT+MY YYF+S HT+DIWWKKYLT  Q++QFLTMNAQ   ++   C GF P++  +YL YI SL  LF+NF+ KSY   KP   K   KK
Sbjct:    1 MATELWASYKQWADETETLFLDWVDPSGGYKLSPMQTLPFADFASAFAICVAYLTFVAVGTLVMKAGVPAIKTSALQFVYNPLQVVLCSYMCVEAGIQAYRNGYSATPCNAYNAENPVMGNVLYMFYLSKILDFCDTFFIIVGKKWNQLSFLHVYHHLTIFFIYYMNFRVAYDADIYATIILNGFIHTIMYMYYFVSAHTRDIWWKKYLTAMQMVQFLTMNAQGYLMVSRECPGFPPKVPIMYLAYIQSLFWLFMNFFVKSYC-TKPRKAKADKKK 275          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: OQS05005.1 (elongation of very long chain fatty acids protein [Thraustotheca clavata])

HSP 1 Score: 290.8 bits (743), Expect = 4.400e-75
Identity = 138/259 (53.28%), Postives = 179/259 (69.11%), Query Frame = 0
Query:    4 ALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKPV-KLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTKDIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSY 262
            AL   + +        I +WADP+G    +PT+ WP+     A A+A  YL+ V VG+ +MK+  P      LQF YN  Q+ALCSYMCIEA IQAYR++Y+ +PC  +N   P +  ++WLFYVSK+ DF DT FII+GKKW QLSFLHVYHH+TIF +YWLN+   YDGD++LT+ILNG IHT+MYTYYF+S HTK IWWKKYLT  Q+IQF+TMN QA   +   C+G    ++ +YL YI SL  LF+NF+ +SY
Sbjct:    3 ALWLQFDEIVRPYEKVILEWADPSGRYDLSPTKNWPMTDFTSAAAVALGYLVFVIVGTIIMKSGVPAFNTSALQFVYNPIQIALCSYMCIEAGIQAYRHDYSVMPCNAYNTAEPVMGNVMWLFYVSKILDFMDTFFIIVGKKWKQLSFLHVYHHLTIFSIYWLNIRVLYDGDVYLTIILNGFIHTIMYTYYFVSAHTKTIWWKKYLTTMQLIQFITMNVQAYMTISKKCEGAPMNVSIMYLVYIQSLFWLFMNFFVQSY 261          
BLAST of NO02G04610 vs. NCBI_GenBank
Match: BAO27783.1 (delta6 poly unsaturated enlongase-b [Fistulifera solaris] >GAX26785.1 elongation of very long chain fatty acids protein 4 [Fistulifera solaris])

HSP 1 Score: 290.0 bits (741), Expect = 7.600e-75
Identity = 149/279 (53.41%), Postives = 189/279 (67.74%), Query Frame = 0
Query:    4 ALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIAAFYLIIVFVGSAMMKNAKP-VKLYGLQFFYNISQVALCSYMCIEAAIQAYRNNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSFLHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTK--------DIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLLVLFLNFYFKSYSGVKPNGKKPVS 274
            +L  +Y  T   +  +I KW+DP     +  T  WPLA    AL+IA  Y + V +GSA+MK   P ++LY L+F YN+SQ+ LC+YM +EA   AYRN YT  PC  ++  NPP+A LLWLFY+SKV+DF DT+FI+ GKKW QLSFLHVYHH+TIFL YWLN +  YDGD++LTV+LNG IHTVMYTYYF+ MHTK         IWWK  LT+ Q+IQF+TM +Q  YLL   CK  S ++   Y+ YILSL VLF  F+ +SY  VKP+ KK  S
Sbjct:    2 SLADNYIATLDSVGESILKWSDPEN-QFRGYTNDWPLARFSTALSIALAYFLFVVLGSAIMKLGVPAMELYPLKFVYNVSQIMLCAYMTLEALFLAYRNGYTVTPCVGYDQMNPPVANLLWLFYISKVWDFWDTIFIVTGKKWRQLSFLHVYHHITIFLFYWLNSHVNYDGDVYLTVLLNGFIHTVMYTYYFICMHTKVPETGKSLPIWWKSSLTMMQMIQFITMMSQGSYLLVTQCKTTSLRVVACYIVYILSLFVLFAQFFVQSY--VKPSKKKKQS 277          
The following BLAST results are available for this feature:
BLAST of NO02G04610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
AQX92136.14.300e-15599.64delta-6 fatty acid elongase [Nannochloropsis ocean... [more]
EWM30230.16.500e-13587.23elongation of very long chain fatty acids [Nannoch... [more]
XP_005820376.13.500e-8060.24hypothetical protein GUITHDRAFT_98336 [Guillardia ... [more]
XP_009831338.19.500e-7855.73hypothetical protein H257_07493 [Aphanomyces astac... [more]
XP_008871334.11.200e-7756.11hypothetical protein H310_07682 [Aphanomyces invad... [more]
CBJ26568.18.100e-7763.35Fatty acid elongase [Ectocarpus siliculosus][more]
XP_009037003.12.400e-7658.37hypothetical protein AURANDRAFT_53701 [Aureococcus... [more]
AIG53905.11.500e-7552.54delta6-C18 elongase protein, partial [Pythium sp. ... [more]
OQS05005.14.400e-7553.28elongation of very long chain fatty acids protein ... [more]
BAO27783.17.600e-7553.41delta6 poly unsaturated enlongase-b [Fistulifera s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007137NSK007137Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04610.1NO02G04610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622402gene_1055Nannochloropsis oceanica (N. oceanica CCMP1779)gene
ELOgene450Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04610.1NO02G04610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04610 ID=NO02G04610|Name=NO02G04610|organism=Nannochloropsis oceanica|type=gene|length=1932bp
CGGCGAGCGACGGGTTGTTGATGCTTCACTCCCTCTGGAGCCCCCACCTT
CATTAGGTAATCTCCACATTGCTTCCTTTGCTATCTATGCCACAAGCCTC
TAGATAACTCGCGAAGATGCTGGCGGGGATTGGACCGCGTCGTAACCCTG
GCTTGCCCACCACCATTCGTACGTCATTCATCCCTTTCCACCTCAAGCAA
GAGGCCCAATCCATTTTACTGCCCCATGCCAAGGGCGGCATGTACTGGAG
TTGTCTCACGTTACATGCATCATGCGACCCGCGCAAACCAGGCACAATTG
TTATAGTTTTGATCGGCTCCTCCTCGCATAGAGTATCTTATCTCCTCTCC
CAACCATCTCACCACTCTCCCTCATCCTCAACACATATCAGGCAGCCCTC
ACTTGTCCCATCACCATAAAAAGCATCATGGCCGCCGCCCTTCTTGCAGA
CTATCAAAAAACCTGCACGGACTTGTCCGCCGCCATTTTTAAGTGGGCTG
ACCCTGCGGGCGCCATGGTCAAGGCGCCCACTCGCACCTGGCCCTTGGCG
GGTTTGGACGTGGCCCTGGCTATCGCGGCTTTCTACCTCATCATTGTCTT
TGTGGGTTCGgtacgtctttggaataccgtgtgtatagaaagagagatta
ggcgtcgataaatagagttagactgcgtagggtatccagagctgcaacat
ctcagcaggcgcttccacctctcttatcccctgttctccacctatcttct
acctcccctccccaaagGCCATGATGAAGAACGCAAAGCCAGTAAAATTG
TACGGCTTGCAATTCTTCTACAACATCTCCCAGGTCGCCCTATGCTCCTA
TATGTGCATCGAGGCTGCCATTCAGGCCTACCGTAACgtaggtcctccat
ccacccttttcctccttaccatctccaattcccgccccctccctttgtgt
tttaagtgaagaaatacaaaatagcaaaacttactttcgcctctgctaaa
atctaacagAACTACACCTTCCTCCCTTGCGAGCCGTTCAATGCTACCAA
CCCACCAATCGCCCCTCTCCTGTGGCTCTTCTACGTCTCCAAGGTCTTCG
ACTTCGCCGACACCGTCTTCATCATCCTGGGAAAGAAGTGGAACCAGCTA
TCATTTCTGCATGTGTACCACCACGTGACCATCTTTTTGGTGTATTGGTT
GAATTTGAATGCGGGATATGATGGCGATATTTTCCTGACAGTCATTCTTA
ACGGGGCAATCCACACGGTAATGTACACTTACTACTTCCTCTCCATGCAC
ACCAAGGACATTTGGTGGAAGAAGTACTTGACACTGTTCCAGATTATTCA
GTTCCTGACCATGAATGCTCAGGCGATCTACTTGTTATGTGTGGGTTGCA
AGGGGTTCTCGCCTCAGATTACGAAGCTGTATCTTGGGTACATCCTGTCG
CTGTTGGTGCTTTTCCTCAATTTTTACTTCAAATCGTATTCTGGTGTGAA
GCCCAATGGTAAGAAGCCGGTTTCCAAGAAGGCTTAACCAGAGAATGGAT
ATTGTAGGTTCGGTGGAAATGGAAGGGAGAGAATTGATGCGAGAGGAGAG
CGAGGCCAATCGCACATGCGACGACGACGGAACGATATGGACAACAACAT
CAACAAACTGCAAGATGGTACACGTCTCTGAGAAGAGGCGTAGTGGCTTC
TATATGCGTACATATTTACAGATGACTTCAATCTCATACAAAAAAAGGAA
GGGAAAAATGGGTAGAGTTTCAAGTCACTGGCTGGGGAAATAGCTGGGGG
AGTAAGAGTAAAAACTACACATTAAGGAAAGCCTGCCGGCTGCAGGGTGT
TTCCCCAAAGGGTTCTTATACATGCAAAAGAAGAAGAAGGACTTTTCGCA
CACGCAAATTCTCTTGCTCATAATCATTTGTT
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protein sequence of NO02G04610.1

>NO02G04610.1-protein ID=NO02G04610.1-protein|Name=NO02G04610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MAAALLADYQKTCTDLSAAIFKWADPAGAMVKAPTRTWPLAGLDVALAIA
AFYLIIVFVGSAMMKNAKPVKLYGLQFFYNISQVALCSYMCIEAAIQAYR
NNYTFLPCEPFNATNPPIAPLLWLFYVSKVFDFADTVFIILGKKWNQLSF
LHVYHHVTIFLVYWLNLNAGYDGDIFLTVILNGAIHTVMYTYYFLSMHTK
DIWWKKYLTLFQIIQFLTMNAQAIYLLCVGCKGFSPQITKLYLGYILSLL
VLFLNFYFKSYSGVKPNGKKPVSKKA*
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Synonyms
Publications