NO02G04590, NO02G04590 (gene) Nannochloropsis oceanica

Overview
NameNO02G04590
Unique NameNO02G04590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr2:1241432..1242700 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidate cytidylyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1241432..1242700 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006139nucleobase-containing compound metabolic process
Homology
BLAST of NO02G04590 vs. NCBI_GenBank
Match: EWM30338.1 (phosphatidate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 614.8 bits (1584), Expect = 2.000e-172
Identity = 318/416 (76.44%), Postives = 349/416 (83.89%), Query Frame = 0
Query:    1 MPRRQMLAV-AAAASCFCLAAAFVQQSSLPSLHLSTGRVADHFSMPVRSRVAAFPVRITKLPTMINSNFDSLQPGITAPSSSSSTFAPPASGVVSAKVSTPSAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIA 416
            M RR +LAV A AASC C A A+VQ    PSL  +         +P   R   FP        + ++  D LQPGITAP+SS++ F PP+SG+V    +T +   PKKKGSLQTRI TGIVLGALATYWVFGGKWVFM+GFLVQAI AQREYYRMC KAG TP+RRISFVSTLLMY+IAC +P YHEMVLPL GTAVMIWLL+MRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFA+IL K WP+WIPL LIPDP+MWTEGAIVIWWTYLTIIC+DIGA+ATGKT GR KLST+STAAG TSPNKTVEG+LGGFVSAT VAT+MSRLLNWPLWWLSGPAYGLMLGV+ALVGDLTASMFKRDAG+KDSGGLLPGHGGILDRIDSFMFTGP A+LFV V LP+ARRIA
Sbjct:    1 MARRPILAVMAMAASCCCRAIAYVQ----PSLPSNLRPRCRPSGLPSHLRSVRFPSGRRSTSFLQSAYLDGLQPGITAPTSSTA-FTPPSSGIVVTSDATSAPTRPKKKGSLQTRIATGIVLGALATYWVFGGKWVFMAGFLVQAIFAQREYYRMCIKAGVTPSRRISFVSTLLMYVIACHVPFYHEMVLPLAGTAVMIWLLLMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFASILAKVWPSWIPLRLIPDPEMWTEGAIVIWWTYLTIICADIGAYATGKTLGRTKLSTLSTAAGATSPNKTVEGLLGGFVSATVVATLMSRLLNWPLWWLSGPAYGLMLGVIALVGDLTASMFKRDAGLKDSGGLLPGHGGILDRIDSFMFTGPFAYLFVLVVLPLARRIA 411          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: CEL95816.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 348.2 bits (892), Expect = 3.600e-92
Identity = 167/337 (49.55%), Postives = 233/337 (69.14%), Query Frame = 0
Query:   80 SSSSTFAPPASGVVSAKVSTPSAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILT--KFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRI 415
            S S+   P     +S K+  P  +  ++  +++ R+LTG+ LG   T WVF G  +F    ++Q I+AQ EYYRMC   G  PARRIS VS+L++Y +AC  P YHE+VLPL GTA+M+W L+MR +P  I+E+ST+ +G+F+  YLPSFWIRLR LG V  + F  +L   K++P W+P  + P P +WT+GA+V WWT+L+I   D+ A+  GK+FGR KL+++S AAG  SPNKTVEG LGG + +  ++ + + L++WP+W  +G  YG ML VV LVGDLTAS FKRDAG+KDSG +LPGHGG+LDR+DS+M T   + +FV+  LP  R+I
Sbjct:  111 SKSAQTQPAQPAAISPKMRGPPVSLAQRLSTVKKRVLTGVGLGLFGTAWVFSGNALFTMIIILQCIVAQLEYYRMCIFKGIYPARRISMVSSLILYTMACYAPQYHELVLPLSGTAIMVWFLLMRPSPGTISEISTSFMGLFWCSYLPSFWIRLRFLGPVEKTRFVALLNLRKWYPPWLP-KITPPPDLWTQGAVVTWWTFLSIAMGDVAAYFLGKSFGRRKLASISPAAGAASPNKTVEGALGGLLMSVLMSLLGAWLMHWPIWPFTGALYGTMLAVVGLVGDLTASTFKRDAGLKDSGHILPGHGGLLDRVDSYMLTATPSLIFVQYLLPALRKI 446          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: CBJ25849.1 (Phosphatidate cytidylyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 336.7 bits (862), Expect = 1.100e-88
Identity = 178/360 (49.44%), Postives = 240/360 (66.67%), Query Frame = 0
Query:   70 SLQPGITAPSSSS--------STFAPPASGVVSAKVSTPSAATPKK-KGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPS-TFATILTKF--WPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIAVT 418
            S++P   A  SSS        S    PA    ++  S  S A PK    +L  R+ TG+++ A+AT W+F G WVF  GF +QA+LAQ EYYRM  + G  PARRIS V+T+L+Y  A   P  H  V+   G  +M + L++R+ PA I ++STT +G+FY  YLPSFW+RLRALG   P+ ++A +   F  +PAW P   +P P   T+GA++ W TY TI+ +D+GA+  GK+ G+ KLS VS AAG  SPNKT+EG+LGG  +++  ATI +RLL WP WW +GPAYG ML +V LVGDLTAS+FKRDAG KDSG LLPGHGG LDR+DS++FT P A++FVK+ LP+A ++  +
Sbjct:  145 SIRPQFEALVSSSDALKKELASAKINPAQSATASGGSASSPAPPKGILSTLTKRVRTGVLMAAVATVWIFSGNWVFSVGFALQALLAQLEYYRMAMQKGVKPARRISAVATVLLYSFAVGFPYLHNYVMANIGLYIMCYFLLVRRTPATIGDISTTFMGVFYGAYLPSFWVRLRALGTGFPTVSWAGVRAYFPWYPAWAP---VPVPDTITQGALITWCTYNTIVAADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATIGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKLVAS 501          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: XP_005537170.1 (probable phosphatidate cytidylyltransferase [Cyanidioschyzon merolae strain 10D] >XP_005538737.1 CTP:phosphatidate cytidylyltransferase, phosphatidate cytidylyltransferase [Cyanidioschyzon merolae strain 10D] >BAM81134.1 probable phosphatidate cytidylyltransferase [Cyanidioschyzon merolae strain 10D] >BAM82701.1 CTP:phosphatidate cytidylyltransferase, phosphatidate cytidylyltransferase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 288.9 bits (738), Expect = 2.600e-74
Identity = 150/339 (44.25%), Postives = 209/339 (61.65%), Query Frame = 0
Query:   88 PASGVVSAKVSTPSAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAP-AKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTK----FWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDS-----GG----LLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVAR 413
            PA    +A V+  + AT +    L  R+++GIV+G +AT W+  G WVF +G  V A+L Q EYY M    G  PA+R    +++L   +A   P   E V P+  T +  ++L+ R+   A I ++STT +GMFY GYLP+FW+R+RALG +  + F  ++++     WP W     +P P+ WT GA + WWT+L++  SDIGA   G+ FGR KLS +       SP KTVEG +GGF+ +  V+ + + L+ WPLWWL+G  YG+++GVV L+GDLTAS+FKRDAG KDS     GG     LPGHGGILDR DSF+FT P  + FV + LP  R
Sbjct:  109 PADARSAALVA--AVATTRPARDLAVRVVSGIVMGLVATTWILAGIWVFTAGLTVVAVLGQLEYYNMVRAKGIRPAQRAGIAASILALWVAAAAPQASEAVFPVSATLICTYMLLHRREKFATIADISTTFMGMFYAGYLPTFWVRMRALGGIEQTRFPAVVSRLPDVLWPGW-----LPPPEGWTVGAALTWWTWLSVASSDIGALFIGRAFGRRKLSDI-------SPKKTVEGAIGGFLCSALVSILGAFLMRWPLWWLTGTLYGILIGVVGLLGDLTASLFKRDAGFKDSPATAFGGRFRWALPGHGGILDRTDSFVFTAPLVYYFVTMFLPALR 433          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: EJK69026.1 (hypothetical protein THAOC_09755 [Thalassiosira oceanica])

HSP 1 Score: 267.7 bits (683), Expect = 6.100e-68
Identity = 163/406 (40.15%), Postives = 231/406 (56.90%), Query Frame = 0
Query:   23 VQQSSLPSLHLSTGRVADHFSMPV---RSRVAAFPVRITKLPTMINSNFDSLQPGITAPSSSSSTFAPPASGVVSAKVSTPSAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGD--VMPSTFATILTKFW--------PAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIA 416
            VQQ S PSL  S  R     S+PV   +  + + P  ++  P  +N     L   +T P+ S+ T  P             +  T KKKG     +L G  LGA    WV+ G  +F + F +   L Q EYYRM  +A   PARRIS V     ++ A   P  H++VLP+  T  MIW L MR++   I+E++TT +GMFY+GY+PSFW+R+R LG   + P+  + I+   +        P W+P   +  P   T GA  I+WT+L I  SD+G +  G+ +G+ KL  +S AA +TSPNKTVEGV+GG   +  +AT+ + +  WP W++ GP +G+ L ++ LVGDLTASM KRDAGMKD G L+P HGGI+DR+DS++FT P  +L     +P  RR+A
Sbjct:  166 VQQPSEPSL-TSAQRGQ---SLPVVNEQGNLISQPHGVSASP--LNDTQTELSLALT-PAQSNETAVP------------STEKTKKKKG---RSVLFGATLGASVALWVYSGNKIFTALFTLMTALGQLEYYRMVMRANIYPARRISVVGACATFVTALFAPDLHQIVLPVFSTYAMIWFLTMRRSVTTISEIATTFMGMFYLGYIPSFWVRIRQLGGNVLQPTRLSPIVKPLFQKLNLGKVPKWLP-KTVSYPV--TVGANFIFWTWLCIAFSDVGGYFAGRKYGKTKLGAISEAAEKTSPNKTVEGVIGGCTFSLVLATLGAWIQKWPYWYVLGPVHGVSLALLGLVGDLTASMLKRDAGMKDFGDLIPEHGGIMDRVDSYIFTAPYGWLVCGYLIPWLRRVA 546          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: XP_002181477.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46691.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 267.3 bits (682), Expect = 8.000e-68
Identity = 139/344 (40.41%), Postives = 206/344 (59.88%), Query Frame = 0
Query:   86 APPASGVVSAKVSTPSAAT--PKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATIL------------TKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIA 416
            AP  +G+  +  S P++ T  P         +L G ++GA+   WVF G ++F   F +  +L Q EYYRM    G  PARRIS + +  M++ A   P+ HE+ LP+ G   MIW L M++    I E++TT  GMFY+GY+PSFW+R+R LG   P+  A++              K  P++IP  ++      T G+I I+WT+L +  SD+GA+  G+ +G  KL  V+ AAG TSPNKTVEGVLGG   +  +    +    WP W ++G  +G++LG++ L+GDLTASM KRDAG+KD G L+P HGGILDR+DSF+++ P ++L +   +P  + +A
Sbjct:  234 APVTNGMDMSIESKPTSKTAPPPTLQKKSRSVLFGAIMGAVVACWVFSGNYIFTGLFTLMTLLGQLEYYRMVMGTGVNPARRISVLGSCSMFLTALFTPSLHEICLPIFGLYAMIWFLTMKRTVTTIPEIATTFTGMFYLGYVPSFWVRIRILGTQEPTRLASVAEPFLRFLADKSQAKLVPSFIPQAVV---LPITTGSIFIFWTWLCLAFSDVGAYFVGRRYGNTKLGAVAPAAGATSPNKTVEGVLGGCAVSGLLGVFGAWAQKWPYWGVTGAVHGILLGLIGLIGDLTASMIKRDAGVKDFGDLIPDHGGILDRVDSFIWSAPYSWLVINSVIPFLKSVA 574          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: XP_009037898.1 (hypothetical protein AURANDRAFT_71828 [Aureococcus anophagefferens] >EGB07265.1 hypothetical protein AURANDRAFT_71828 [Aureococcus anophagefferens])

HSP 1 Score: 262.3 bits (669), Expect = 2.600e-66
Identity = 134/303 (44.22%), Postives = 188/303 (62.05%), Query Frame = 0
Query:  110 SLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLR-------ALGDVMPSTFATILTKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVST-AAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFV 405
            +L TR+ TG+ LG L TYW     W F  G L+QA++AQ EY+RM    GA PARRI   +++    +A   PA HE+V P+G T +M+WL +MRK  + I ++ST+++G+FY  YLPSFW+RLR       A  ++ P      +     A +PL       +   GA  +WWT LT+  SDIGA+  GK FGR+ L+ +   AA + SPNKT+EG + GF +A     + +R + WPLW LSG  +G+ + ++AL+GDLTASM KRDAG+KD G L PGHGG+LDR+D + F  P A + +
Sbjct:  118 TLATRVTTGVGLGLLFTYWTMVPNWAFALGMLLQALVAQLEYFRMAIIRGARPARRIVMAASIAAMAVAAGAPALHELVFPVGATWMMLWLCLMRKHASSIQDISTSLMGLFYTAYLPSFWVRLRCAPEWTMAAANLAPEGAFASVAAAAAAHVPL-------LRHAGAQAVWWTALTVAVSDIGAYFGGKRFGRHSLAALGLGAAAEASPNKTIEGAISGFGAAGLCFGLGARAMGWPLWPLSGVGFGVTIAMLALLGDLTASMLKRDAGVKDFGHLFPGHGGVLDRLDGYFFVAPIALVLL 413          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: OSX78781.1 (hypothetical protein BU14_0098s0007 [Porphyra umbilicalis])

HSP 1 Score: 258.8 bits (660), Expect = 2.900e-65
Identity = 129/300 (43.00%), Postives = 189/300 (63.00%), Query Frame = 0
Query:  111 LQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPV 411
            LQ RI  G +LG  A  W+F G   F +  ++  +L Q EYYRM  + G TPA+R+  ++T+   + +   P+  + V P+GGT ++++LL  ++  A I ++STT +G+FY GYLPSFW+RL     V  S  A +L        P  ++P   + T GA+V++WT+L    +DIGAF  G+TFG+  +S++       SP KT EG + GF+ + +V+ + + LL WPLW ++G  YG+ +GVV L+GDLTASMFKRDAG+KDSG L PGHGGILDR DS++ + P  + FV   LP+
Sbjct:   52 LQIRIAMGFLLGGAAITWIFSGTAAFAALMMLVTLLGQLEYYRMAIRKGHTPAQRMGLLTTVATMVSSLFSPSLADAVFPVGGTLILVYLLFRKRRVATIADISTTFMGLFYAGYLPSFWVRLHGWEPVGGSHAARVLAAAISTVWPAAVLPFRPLLTTGALVVFWTWLANASADIGAFFVGRTFGKTPISSL-------SPKKTAEGAVAGFLCSASVSLLGAYLLRWPLWQVTGAIYGIGVGVVGLLGDLTASMFKRDAGVKDSGRLFPGHGGILDRTDSYVLSAPLVYYFVTAVLPL 344          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: XP_002295218.1 (phosphatidate cytidylyltransferase [Thalassiosira pseudonana CCMP1335] >EED87522.1 phosphatidate cytidylyltransferase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 256.1 bits (653), Expect = 1.800e-64
Identity = 132/295 (44.75%), Postives = 184/295 (62.37%), Query Frame = 0
Query:  121 LGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIA 416
            +G     WV+ G ++F   F +   L Q EYYRM  KAG  PARRIS V    M++ A   P  H++VLP+  T  M+W L MR+    I+E++TT+ G+FY+GY+PSFW+R     ++ P T    L  F P  I L +       T GA  I+W++L I  SD+G +  G+ FG+ KLS +S AAG+TSPNKTVEGV+GG   +  +AT+ + +  WP W + GP +G+ML ++ LVGDLTASM KRDAG+KD G L+P HGGI+DR+DS++FT P  +      +P  + IA
Sbjct:    1 MGLTVAGWVYSGNYIFTLLFTLMTALGQLEYYRMVMKAGIYPARRISVVGACAMFVTALFAPDLHQIVLPVVSTWAMVWFLTMRRTITSISEIATTLTGIFYLGYIPSFWVRET---NIHPYTL-NKLPSFLPKTIHLPI-------TTGANFIFWSWLCIAFSDVGGYFAGRKFGKTKLSAISPAAGKTSPNKTVEGVIGGCAFSMILATLGAWIQKWPYWAIVGPIHGVMLALLGLVGDLTASMLKRDAGLKDFGDLIPEHGGIMDRVDSYIFTAPYGWFMCAYMIPWLKGIA 284          
BLAST of NO02G04590 vs. NCBI_GenBank
Match: XP_005711550.1 (Phosphatidate cytidylyltransferase [Chondrus crispus] >CDF41256.1 Phosphatidate cytidylyltransferase [Chondrus crispus])

HSP 1 Score: 251.1 bits (640), Expect = 5.900e-63
Identity = 133/331 (40.18%), Postives = 188/331 (56.80%), Query Frame = 0
Query:   87 PPASGVVSAKVSTPSAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQREYYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWLLMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRA-LGDVMPSTFATILTKFWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKLSTVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYGLMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCAFLFVKVGLPVARRIAV 417
            PPA     A  S P+  + + K   Q RI  G  +GA+   +VF G+WVF  G L  +++   EYYRM +  G  PA ++    T    + +   PA  ++V P+GGT + I+LL  RK  A I ++STT +G+FY GYLPSFW+RL        P+  A  + + WPA +    I      T G+++++WT+L    +DIGAF  GKT+GR + S +       SP KTVEG + GFV +  V+ + + LL WPLWW +G  YG  +GV+ L GDL  S FKRD G KDSG L PGHGG+LDR DS++   P  + +  + LP   R+ +
Sbjct:   60 PPAPKPALAAPSDPARLSSRFK--TQRRIAVGFAMGAVVIAFVFSGRWVFALGMLATSLIGLYEYYRMVAAKGHLPAHKMGLCVTAATTLSSAYAPALADVVFPVGGTMICIYLLFRRKRIATIADISTTFMGLFYAGYLPSFWVRLHEYTASSSPNLVAAAIARLWPAALGFSPI-----ITVGSLLVFWTWLATASADIGAFFIGKTYGRTRFSNI-------SPKKTVEGAVAGFVCSAGVSILGAYLLQWPLWWATGAVYGTTVGVLGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDRADSYVLVAPLVYFWATMVLPFIARVVL 376          
The following BLAST results are available for this feature:
BLAST of NO02G04590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30338.12.000e-17276.44phosphatidate cytidylyltransferase [Nannochloropsi... [more]
CEL95816.13.600e-9249.55unnamed protein product [Vitrella brassicaformis C... [more]
CBJ25849.11.100e-8849.44Phosphatidate cytidylyltransferase [Ectocarpus sil... [more]
XP_005537170.12.600e-7444.25probable phosphatidate cytidylyltransferase [Cyani... [more]
EJK69026.16.100e-6840.15hypothetical protein THAOC_09755 [Thalassiosira oc... [more]
XP_002181477.18.000e-6840.41predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_009037898.12.600e-6644.22hypothetical protein AURANDRAFT_71828 [Aureococcus... [more]
OSX78781.12.900e-6543.00hypothetical protein BU14_0098s0007 [Porphyra umbi... [more]
XP_002295218.11.800e-6444.75phosphatidate cytidylyltransferase [Thalassiosira ... [more]
XP_005711550.15.900e-6340.18Phosphatidate cytidylyltransferase [Chondrus crisp... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007135NSK007135Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04590.1NO02G04590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575145gene_1053Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g10gene448Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04590.1NO02G04590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04590 ID=NO02G04590|Name=NO02G04590|organism=Nannochloropsis oceanica|type=gene|length=1269bp
ATGCCGCGGCGTCAGATGTTGGCGGTGGCAGCCGCAGCCTCGTGCTTTTG
CCTGGCAGCGGCCTTCGTGCAGCAGTCTTCCTTGCCCTCCTTGCACTTGT
CGACAGGCCGGGTCGCGGACCACTTCTCCATGCCAGTCCGCTCAAGAGTA
GCAGCATTTCCTGTACGCATAACGAAGTTACCGACAATGATAAACTCGAA
CTTCGATAGCTTGCAGCCCGGGATCACAGCTCCATCGTCTTCCTCCTCTA
CCTTTGCCCCTCCTGCCTCGGGCGTTGTCTCCGCCAAAGTCTCGACACCC
AGCGCCGCCACGCCAAAGAAAAAGGGAAGCTTGCAGACGAGGATCCTCAC
GGGGATAGTGCTTGGAGCATTGGCGACGTATTGGGTATTTGGTGGAAAGT
GGGTCTTTATGTCGGGCTTTCTTGTGCAAGCTATCTTGGCCCAACGCGAG
TACTACAGGATGTGTTCCAAGGCCGGGGCGACGCCTGCCCGTCGGATCAG
CTTTGTCAGTACCTTGCTTATGTACATCATTGCGTGTCAAATACCCGCAT
ATCACGAGATGGTCTTGCCTTTGGGAGGGACCGCAGTCATGATTTGGTTG
CTGATGATGCGGAAGGCCCCGGCAAAAATTACGGAGGTCTCCACAACCAT
TCTGGGGATGTTTTACATTGGTTATCTCCCGTCGTTTTGGATCCGTTTGC
GTGCCTTAGGCGATGTAATGCCCAGCACATTTGCCACAATTTTGACGAAA
TTTTGGCCGGCGTGGATTCCCTTGCATTTGATTCCTGACCCGCAGATGTG
GACGGAAGGAGCGATAGTGATTTGGTGGACATACCTAACAATTATTTGTT
CTGATATTGGGGCGTTTGCCACGGGAAAGACGTTTGGGAGGAATAAATTG
TCGACCGTGAGTACGGCTGCGGGACAAACATCACCGAATAAGACGGTGGA
GGGCGTGCTGGGGGGGTTTGTGAGTGCCACGGCCGTTGCAACGATCATGT
CGAGGTTGCTTAATTGGCCTTTATGGTGGCTGAGTGGTCCGGCGTACGGG
TTAATGCTGGGGGTTGTGGCGTTGGTAGGAGATTTGACTGCGTCGATGTT
CAAGCGGGACGCGGGGATGAAAGATTCGGGTGGGCTATTACCCGGTCACG
GGGGCATTTTGGATCGCATCGACTCGTTCATGTTCACGGGTCCTTGTGCG
TTTTTGTTTGTGAAGGTAGGCTTACCGGTGGCGAGGAGGATTGCGGTGAC
CAAGGGGTGGGGTGCCTAG
back to top

protein sequence of NO02G04590.1

>NO02G04590.1-protein ID=NO02G04590.1-protein|Name=NO02G04590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPRRQMLAVAAAASCFCLAAAFVQQSSLPSLHLSTGRVADHFSMPVRSRV
AAFPVRITKLPTMINSNFDSLQPGITAPSSSSSTFAPPASGVVSAKVSTP
SAATPKKKGSLQTRILTGIVLGALATYWVFGGKWVFMSGFLVQAILAQRE
YYRMCSKAGATPARRISFVSTLLMYIIACQIPAYHEMVLPLGGTAVMIWL
LMMRKAPAKITEVSTTILGMFYIGYLPSFWIRLRALGDVMPSTFATILTK
FWPAWIPLHLIPDPQMWTEGAIVIWWTYLTIICSDIGAFATGKTFGRNKL
STVSTAAGQTSPNKTVEGVLGGFVSATAVATIMSRLLNWPLWWLSGPAYG
LMLGVVALVGDLTASMFKRDAGMKDSGGLLPGHGGILDRIDSFMFTGPCA
FLFVKVGLPVARRIAVTKGWGA*
back to top
Synonyms
Publications