NO02G04560, NO02G04560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G04560 vs. NCBI_GenBank
Match: KFK25779.1 (hypothetical protein AALP_AA8G159300 [Arabis alpina]) HSP 1 Score: 167.5 bits (423), Expect = 3.000e-38 Identity = 79/139 (56.83%), Postives = 96/139 (69.06%), Query Frame = 0 Query: 6 TVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANAEA 145 TV+D+ P DF+ AYA+HLK E+P W DIVKTG KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +GG RH+L Q E + V D+ GGRKIT GQ LDQ+A +A AE+ Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRKITSSGQRDLDQVAGRIAAAES 144
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_012840588.1 (PREDICTED: 40S ribosomal protein S19-3 [Erythranthe guttata] >EYU34611.1 hypothetical protein MIMGU_mgv1a015813mg [Erythranthe guttata]) HSP 1 Score: 167.2 bits (422), Expect = 3.900e-38 Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 0 Query: 4 AVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVA 141 A TV+D+ P DF+ +YAAHLK E+P+W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +G RH+L Q +N+ V D++GGRKIT GQ LDQ+A +A Sbjct: 5 AKTVKDVSPHDFVKSYAAHLKRSGKMELPEWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFGKSSGSVARHILQQLQNMNIVELDTSGGRKITSSGQRDLDQVAGRIA 141
BLAST of NO02G04560 vs. NCBI_GenBank
Match: PSS07966.1 (40S ribosomal protein like [Actinidia chinensis var. chinensis]) HSP 1 Score: 167.2 bits (422), Expect = 3.900e-38 Identity = 79/139 (56.83%), Postives = 95/139 (68.35%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASV 140 M A TV+D+ P +F+ AYAAHLK E+P WADIVKTG KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +G RH+L Q E LK + D+ GGRKIT GQ LDQ+A + Sbjct: 1 MEAARTVKDVSPHEFVKAYAAHLKRSGKMELPHWADIVKTGTFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLEALKIIDMDTKGGRKITSSGQRDLDQVAGRI 139
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_010670047.1 (PREDICTED: 40S ribosomal protein S19-2-like [Beta vulgaris subsp. vulgaris] >XP_010693184.1 PREDICTED: 40S ribosomal protein S19-2 [Beta vulgaris subsp. vulgaris] >KMS99269.1 hypothetical protein BVRB_2g046380 [Beta vulgaris subsp. vulgaris] >KMT20437.1 hypothetical protein BVRB_1g004310 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 166.8 bits (421), Expect = 5.100e-38 Identity = 78/139 (56.12%), Postives = 95/139 (68.35%), Query Frame = 0 Query: 4 AVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143 ++TV+D+ P DF+ AYAAHLK E+P W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +G RH+L Q E K V D GGRKIT GQ LDQ+A + +A Sbjct: 6 SITVKDVSPHDFVKAYAAHLKRSGKIELPPWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPRHFGKSSGAVARHILQQLEETKIVEIDPRGGRKITSSGQRDLDQVAGHITDA 144
BLAST of NO02G04560 vs. NCBI_GenBank
Match: PSR96616.1 (40S ribosomal protein like [Actinidia chinensis var. chinensis]) HSP 1 Score: 166.0 bits (419), Expect = 8.700e-38 Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASV 140 M A TV+D+ P +F+ AY+AHLK E+P W DIVKTG KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +G RH+LIQ EN+K + D GGR+IT G+ LDQ+A + Sbjct: 1 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWMDIVKTGTFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSVARHILIQLENMKIIDSDPKGGRRITSSGRRDLDQVAGRI 139
BLAST of NO02G04560 vs. NCBI_GenBank
Match: ESQ40731.1 (hypothetical protein EUTSA_v10015994mg, partial [Eutrema salsugineum]) HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37 Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143 M TV+D+ P +F+ AYAAHLK E+P W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +GG RH+L Q + + V D+ GGRKIT GQ LDQ+A + A Sbjct: 133 MATGRTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRITAA 274
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_012080358.1 (40S ribosomal protein S19-3 [Jatropha curcas] >KDP31323.1 hypothetical protein JCGZ_11699 [Jatropha curcas]) HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37 Identity = 79/142 (55.63%), Postives = 95/142 (66.90%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143 M A TV+D+ P DF+ AYAAHLK E+P W DIVKTG KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +G RH+L Q +N+ V D GGR+IT GQ LDQ+A +A A Sbjct: 1 MEAARTVKDVSPHDFVKAYAAHLKRSGKIELPPWTDIVKTGTLKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFGKSSGSIARHILQQLQNMNIVDLDQKGGRRITSNGQRDLDQVAGRIAVA 142
BLAST of NO02G04560 vs. NCBI_GenBank
Match: KVI09066.1 (Ribosomal protein S19e [Cynara cardunculus var. scolymus] >KVI09088.1 hypothetical protein Ccrd_012547 [Cynara cardunculus var. scolymus]) HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37 Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143 M A TV+D+ P DF+ AYAAHLK E+P+W DIVKT KELAPYDPDWYY RAA+++R+IYL+ G+GVGA +RIYGG KR G +GG +RH+L Q E +K + D+ GGR+IT G+ LDQ+A + A Sbjct: 1 MATARTVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTATFKELAPYDPDWYYIRAASIVRKIYLRGGLGVGAFQRIYGGHKRNGSSPPHFCRSSGGLVRHILQQLETMKIIEMDTKGGRRITSNGRRDLDQVAGRIVLA 142
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_024012241.1 (40S ribosomal protein S19-3 [Eutrema salsugineum]) HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37 Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143 M TV+D+ P +F+ AYAAHLK E+P W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G +GG RH+L Q + + V D+ GGRKIT GQ LDQ+A + A Sbjct: 1 MATGRTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRITAA 142
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_009134644.1 (PREDICTED: 40S ribosomal protein S19-1-like [Brassica rapa]) HSP 1 Score: 165.2 bits (417), Expect = 1.500e-37 Identity = 77/140 (55.00%), Postives = 94/140 (67.14%), Query Frame = 0 Query: 1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVA 141 M TV+D+ P DF+ AYA+HLK E+P W DIVKTG KELAPYDPDWYY RAA++ R++YL+ G+GVGA RRIYGGSKR G +GG RH+L Q E + V D+ GGRKIT GQ LDQ+A +A Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPPWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKGGRKITSSGQRDLDQVAGRIA 140 The following BLAST results are available for this feature:
BLAST of NO02G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G04560 ID=NO02G04560|Name=NO02G04560|organism=Nannochloropsis oceanica|type=gene|length=1552bpback to top protein sequence of NO02G04560.1 >NO02G04560.1-protein ID=NO02G04560.1-protein|Name=NO02G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bpback to top Synonyms
Publications
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