NO02G04560, NO02G04560 (gene) Nannochloropsis oceanica

Overview
NameNO02G04560
Unique NameNO02G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1552
Alignment locationchr2:1234259..1235810 +

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Properties
Property NameValue
DescriptionRibosomal protein S19e family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1234259..1235810 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR001266Ribosomal_S19e
Homology
BLAST of NO02G04560 vs. NCBI_GenBank
Match: KFK25779.1 (hypothetical protein AALP_AA8G159300 [Arabis alpina])

HSP 1 Score: 167.5 bits (423), Expect = 3.000e-38
Identity = 79/139 (56.83%), Postives = 96/139 (69.06%), Query Frame = 0
Query:    6 TVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANAEA 145
            TV+D+ P DF+ AYA+HLK     E+P W DIVKTG  KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +GG  RH+L Q E +  V  D+ GGRKIT  GQ  LDQ+A  +A AE+
Sbjct:    6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRKITSSGQRDLDQVAGRIAAAES 144          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_012840588.1 (PREDICTED: 40S ribosomal protein S19-3 [Erythranthe guttata] >EYU34611.1 hypothetical protein MIMGU_mgv1a015813mg [Erythranthe guttata])

HSP 1 Score: 167.2 bits (422), Expect = 3.900e-38
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 0
Query:    4 AVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVA 141
            A TV+D+ P DF+ +YAAHLK     E+P+W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +G   RH+L Q +N+  V  D++GGRKIT  GQ  LDQ+A  +A
Sbjct:    5 AKTVKDVSPHDFVKSYAAHLKRSGKMELPEWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFGKSSGSVARHILQQLQNMNIVELDTSGGRKITSSGQRDLDQVAGRIA 141          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: PSS07966.1 (40S ribosomal protein like [Actinidia chinensis var. chinensis])

HSP 1 Score: 167.2 bits (422), Expect = 3.900e-38
Identity = 79/139 (56.83%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASV 140
            M  A TV+D+ P +F+ AYAAHLK     E+P WADIVKTG  KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +G   RH+L Q E LK +  D+ GGRKIT  GQ  LDQ+A  +
Sbjct:    1 MEAARTVKDVSPHEFVKAYAAHLKRSGKMELPHWADIVKTGTFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLEALKIIDMDTKGGRKITSSGQRDLDQVAGRI 139          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_010670047.1 (PREDICTED: 40S ribosomal protein S19-2-like [Beta vulgaris subsp. vulgaris] >XP_010693184.1 PREDICTED: 40S ribosomal protein S19-2 [Beta vulgaris subsp. vulgaris] >KMS99269.1 hypothetical protein BVRB_2g046380 [Beta vulgaris subsp. vulgaris] >KMT20437.1 hypothetical protein BVRB_1g004310 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 166.8 bits (421), Expect = 5.100e-38
Identity = 78/139 (56.12%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    4 AVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143
            ++TV+D+ P DF+ AYAAHLK     E+P W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +G   RH+L Q E  K V  D  GGRKIT  GQ  LDQ+A  + +A
Sbjct:    6 SITVKDVSPHDFVKAYAAHLKRSGKIELPPWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPRHFGKSSGAVARHILQQLEETKIVEIDPRGGRKITSSGQRDLDQVAGHITDA 144          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: PSR96616.1 (40S ribosomal protein like [Actinidia chinensis var. chinensis])

HSP 1 Score: 166.0 bits (419), Expect = 8.700e-38
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASV 140
            M  A TV+D+ P +F+ AY+AHLK     E+P W DIVKTG  KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +G   RH+LIQ EN+K +  D  GGR+IT  G+  LDQ+A  +
Sbjct:    1 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWMDIVKTGTFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSVARHILIQLENMKIIDSDPKGGRRITSSGRRDLDQVAGRI 139          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: ESQ40731.1 (hypothetical protein EUTSA_v10015994mg, partial [Eutrema salsugineum])

HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143
            M    TV+D+ P +F+ AYAAHLK     E+P W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +GG  RH+L Q + +  V  D+ GGRKIT  GQ  LDQ+A  +  A
Sbjct:  133 MATGRTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRITAA 274          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_012080358.1 (40S ribosomal protein S19-3 [Jatropha curcas] >KDP31323.1 hypothetical protein JCGZ_11699 [Jatropha curcas])

HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37
Identity = 79/142 (55.63%), Postives = 95/142 (66.90%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143
            M  A TV+D+ P DF+ AYAAHLK     E+P W DIVKTG  KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +G   RH+L Q +N+  V  D  GGR+IT  GQ  LDQ+A  +A A
Sbjct:    1 MEAARTVKDVSPHDFVKAYAAHLKRSGKIELPPWTDIVKTGTLKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFGKSSGSIARHILQQLQNMNIVDLDQKGGRRITSNGQRDLDQVAGRIAVA 142          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: KVI09066.1 (Ribosomal protein S19e [Cynara cardunculus var. scolymus] >KVI09088.1 hypothetical protein Ccrd_012547 [Cynara cardunculus var. scolymus])

HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143
            M  A TV+D+ P DF+ AYAAHLK     E+P+W DIVKT   KELAPYDPDWYY RAA+++R+IYL+ G+GVGA +RIYGG KR G         +GG +RH+L Q E +K +  D+ GGR+IT  G+  LDQ+A  +  A
Sbjct:    1 MATARTVKDVSPHDFVKAYAAHLKRSGKMELPEWTDIVKTATFKELAPYDPDWYYIRAASIVRKIYLRGGLGVGAFQRIYGGHKRNGSSPPHFCRSSGGLVRHILQQLETMKIIEMDTKGGRRITSNGRRDLDQVAGRIVLA 142          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_024012241.1 (40S ribosomal protein S19-3 [Eutrema salsugineum])

HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANA 143
            M    TV+D+ P +F+ AYAAHLK     E+P W DIVKTG+ KELAPYDPDWYY RAA++ R+IYL+ G+GVGA RRIYGGSKR G         +GG  RH+L Q + +  V  D+ GGRKIT  GQ  LDQ+A  +  A
Sbjct:    1 MATGRTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGVLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRITAA 142          
BLAST of NO02G04560 vs. NCBI_GenBank
Match: XP_009134644.1 (PREDICTED: 40S ribosomal protein S19-1-like [Brassica rapa])

HSP 1 Score: 165.2 bits (417), Expect = 1.500e-37
Identity = 77/140 (55.00%), Postives = 94/140 (67.14%), Query Frame = 0
Query:    1 MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYDPDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGCIRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVA 141
            M    TV+D+ P DF+ AYA+HLK     E+P W DIVKTG  KELAPYDPDWYY RAA++ R++YL+ G+GVGA RRIYGGSKR G         +GG  RH+L Q E +  V  D+ GGRKIT  GQ  LDQ+A  +A
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPPWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKGGRKITSSGQRDLDQVAGRIA 140          
The following BLAST results are available for this feature:
BLAST of NO02G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
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200400600800100012001400SequenceKFK25779.1XP_012840588.1PSS07966.1XP_010670047.1PSR96616.1ESQ40731.1XP_012080358.1KVI09066.1XP_024012241.1XP_009134644.1
Match NameE-valueIdentityDescription
KFK25779.13.000e-3856.83hypothetical protein AALP_AA8G159300 [Arabis alpin... [more]
XP_012840588.13.900e-3856.20PREDICTED: 40S ribosomal protein S19-3 [Erythranth... [more]
PSS07966.13.900e-3856.8340S ribosomal protein like [Actinidia chinensis va... [more]
XP_010670047.15.100e-3856.12PREDICTED: 40S ribosomal protein S19-2-like [Beta ... [more]
PSR96616.18.700e-3854.6840S ribosomal protein like [Actinidia chinensis va... [more]
ESQ40731.11.100e-3754.23hypothetical protein EUTSA_v10015994mg, partial [E... [more]
XP_012080358.11.100e-3755.6340S ribosomal protein S19-3 [Jatropha curcas] >KDP... [more]
KVI09066.11.100e-3752.82Ribosomal protein S19e [Cynara cardunculus var. sc... [more]
XP_024012241.11.100e-3754.2340S ribosomal protein S19-3 [Eutrema salsugineum][more]
XP_009134644.11.500e-3755.00PREDICTED: 40S ribosomal protein S19-1-like [Brass... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007128NSK007128Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04560.1NO02G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575135gene_1050Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04560.1NO02G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04560 ID=NO02G04560|Name=NO02G04560|organism=Nannochloropsis oceanica|type=gene|length=1552bp
CTGGCGGACCGTCTCCTTCCCCTTCCCAATTTCTTGTCTTCACTCGCAAG
CCATTTCCCTTGACCAAGCCCACACCTGTACTTAGAGAAATTGTGTAAGT
TAGCTGGAAACTCTCGGGCCGTAGAAAGCTTGGAAGGATGGCTGGCGTAG
AAGCCTCGCTCCCCTCCTCCCATCCATCCTCTTCTTCGTCGCTAGCCTCT
AGGCGGGGAGGAGGCAAGAAGTCATGGCGTTTGGTCATGTCGCCTTTGCC
ACTCATGTCCAACAGAGACACATTAAGCTTAGACACATATTGACACGGTG
GCCGGGGGCCAAAGCCCTTGTGGCGTCAACCCCAACACTTGCCTTGCTGC
CCCCCCCTGCATCATCACCCCCCCCTGCTTCTTTCCAATCCGCATAACTC
ATCCCACTCCGTCTCTCCCTACACGAACTTAAAGGCGACCATGGGACGCG
CCGTGACAGTGCGGGACATCAAGCCCCAAGACTTCATTGTCGCCTATGCT
GCTCACTTGAAGACGAAGGACAACTTCGAGGTCCCTAAGTGGGCAGACAT
CGTCAAGACCGGTATCGGCAAGGAATTGGCCCCTTACGACCCTGACTGGT
ACTACACCCGGGCCGCGGCCGTCCTCCGCCAGATCTATCTCAAGCAAGGT
ATTGGTGTAGGGGCGCTCCGACGCATCTACGGTGGCTCCAAGCGCCGTGG
GGTGGAGCGATCGACCACAGTGCTGGGGGCCGGGGGCTGCATCCGTCATG
TGCTTATCCAGTTCGAGgtacgtgtgggggtcagtgtggcgttggatgga
gaaaaaagggagaaggggaagactagagagagtagtattcgaagtaagga
ggacgcagcttttgatctggtagcagcgtggtacgaaagagatggaaagg
agtggaactctgcgtgactacgggaaggcttccgtgtaatgggacagaga
ggctgtagaaaattaaggcgcagttggtcaatgtgacgggcacgcagtta
ggtcaatgatctatctgcatgtgtgttcatctctaccagatgttctgttg
atatcgagagatatattgtttgagagagacatatgttaatccccacggat
gaagtacatgaaggaactctagccacaatcgatatgacctgcccataaac
tcaattcccttcctctttcttcctcctttttactgttcacgcctgaaaac
agAACTTGAAGTACGTGACAAAGGATAGCAACGGCGGGCGTAAGATTACC
AAGGAGGGGCAGACGGCCTTGGACCAGATCGCGGCCTCGGTTGCAAACGC
TGAGGCGGACGAGTAAATTACAACATCGACATTACATAGGACTAGCTAGT
GGCGGGTGCTTTCTTTGTTGGATGGGCGTGTACTTGTGTTTCTGGAATGG
ATGCTGCTACGGCTCGCTCCTTTTGTTTGTTTTGATGGGGTGGACAAAGA
CACGTCTAGGCAAGGAAGAAAAGGGGACACTGCAAAAGAAAAACCAATAC
CAAGCATATTCTCTGTGGAGAGAGAAATGAATGATTTTATTTTGTTGGTG
AC
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protein sequence of NO02G04560.1

>NO02G04560.1-protein ID=NO02G04560.1-protein|Name=NO02G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MGRAVTVRDIKPQDFIVAYAAHLKTKDNFEVPKWADIVKTGIGKELAPYD
PDWYYTRAAAVLRQIYLKQGIGVGALRRIYGGSKRRGVERSTTVLGAGGC
IRHVLIQFENLKYVTKDSNGGRKITKEGQTALDQIAASVANAEADE*
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Synonyms
Publications