NO02G04530, NO02G04530 (gene) Nannochloropsis oceanica

Overview
NameNO02G04530
Unique NameNO02G04530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1646
Alignment locationchr2:1226168..1227813 -

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit K
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1226168..1227813 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR009374eIF3k
IPR033464CSN8_PSD8_EIF3K
Homology
BLAST of NO02G04530 vs. NCBI_GenBank
Match: EWM30203.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 7.000e-50
Identity = 118/201 (58.71%), Postives = 128/201 (63.68%), Query Frame = 0
Query:    6 LTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKLQTDVRTDRLESCDLRKKRLSLASSRNKRRYLLRACSVCVHRTELLIATHSFYCVFRTLPFQETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTWKDDIRK 207
            ++TGL  P +Y+SVH++VLG+GLYTQEKVK LEEYL  QV EGSYDFEANK+LLKLYLLYP  AN E VETILLKALLNLPATDFTLLLYILPEKLQTD                                                          E VLTIKDAAEALETARYA+FWSI+NSR AVF AIP WKDDIRK
Sbjct:   37 ISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTD----------------------------------------------------------ENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRK 179          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: XP_004344531.1 (hypothetical protein CAOG_06910 [Capsaspora owczarzaki ATCC 30864] >KJE96610.1 hypothetical protein CAOG_006910 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 77.0 bits (188), Expect = 8.300e-11
Identity = 51/195 (26.15%), Postives = 82/195 (42.05%), Query Frame = 0
Query:   12 MPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKLQTDVRTDRLESCDLRKKRLSLASSRNKRRYLLRACSVCVHRTELLIATHSFYCVFRTLPFQETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTWKDDIRK 207
            +P     +   + G   Y    ++ LE+Y+ +QV +G+YDFE+N  LL+LY  +P+  N +    +LLK LL LPA D+   L++L +KLQ D                                                          E++  I  AA  LE A++  FWS+VN+   +   +P++ D+ RK
Sbjct:   33 LPAGAADLRELLKGTDRYNPTHIERLEKYIQEQVTDGTYDFESNLALLRLYQFHPTKVNADASAQVLLKMLLVLPAGDYASSLFLLSDKLQAD----------------------------------------------------------ESIKNIVAAAHHLEAAQFIQFWSLVNATPKIKQLMPSFADEARK 169          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: CEM14917.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 72.4 bits (176), Expect = 2.000e-9
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   25 GNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKAL-LNLPATDFTLLLYILPEKLQTDV--------RTDRLESCDLR 117
            G GLY+ + ++ LEEYL QQ A  +YD EAN T+LKLYL+YP    +++V  IL+KAL    P  DF L +Y LP     D+           +L++CD +
Sbjct:   14 GEGLYSADSLQTLEEYLDQQWANDTYDVEANLTILKLYLMYPQHMKKDRVRQILVKALGATFPQNDFQLCMYQLPPNRFRDMPEVTELVRLAAKLDTCDFK 114          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: XP_004338209.1 (eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff] >ELR16196.1 eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 71.6 bits (174), Expect = 3.500e-9
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   23 VLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100
            VL  G Y+ + +  L+ YL +Q+ + SYDFEAN  LLK++   PS  + + V+ +L+KAL+NLP  DF L LY+LPE
Sbjct:   12 VLKKGRYSLDSLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPE 88          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: CEP08033.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100
            D++   + G  LY  + V  LEEYL +Q   G YD EAN  +LKLY   P+ A +  +  IL+KAL  +PA DF L LY+L E
Sbjct:    8 DNIATMINGVELYNPDNVSILEEYLSKQCESGEYDLEANLAILKLYQFNPTLAKEPIIVKILVKALTAIPAPDFNLCLYLLAE 90          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: GAN01505.1 (conserved hypothetical protein [Mucor ambiguus])

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 0
Query:   17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100
            D++   + G   Y  E V  LEEYL +Q   G YD EAN  +LKLY   P+ A +  +  IL+KAL  +PA DF L LY+L E
Sbjct:    8 DNIATMINGVERYNPENVNVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAE 90          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: OAD08242.1 (hypothetical protein MUCCIDRAFT_154865, partial [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 0
Query:   17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100
            D++   + G   Y  E V  LEEYL +Q   G YD EAN  +LKLY   P+ A +  +  IL+KAL  +PA DF L LY+L E
Sbjct:    8 DNIATMINGVERYNPENVNVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAE 90          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: EPB85448.1 (hypothetical protein HMPREF1544_07819 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 68.9 bits (167), Expect = 2.300e-8
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 0
Query:   17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100
            D++   + G   Y  E +  LEEYL +Q   G YD EAN  +LKLY   P+ A +  +  IL+KAL  +PA DF L LY+L E
Sbjct:    8 DNIATMINGVERYNPENINVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAE 90          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: OBZ89547.1 (Eukaryotic translation initiation factor 3 subunit K [Choanephora cucurbitarum])

HSP 1 Score: 68.2 bits (165), Expect = 3.900e-8
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEK 101
            + +   + G   Y  E V  LEEYL++Q     YD EAN  LLKLY   PS A +  +  IL+KAL  +PA DF L LY+L E+
Sbjct:    8 EKIATMINGVERYNTENVTVLEEYLIKQCESNEYDLEANLALLKLYQFNPSLAKEPVIIKILVKALTAIPAPDFNLCLYLLAEQ 91          
BLAST of NO02G04530 vs. NCBI_GenBank
Match: CBN78649.1 (eukaryotic translation initiation factor 3 k subunit [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 6.600e-8
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   45 VAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKL 102
            V  G+YDFEANK LLKLY  +P     EKV  +L KAL+N+P+TDF  L+YI+P  L
Sbjct:    7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNL 63          
The following BLAST results are available for this feature:
BLAST of NO02G04530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30203.17.000e-5058.71Winged helix-turn-helix transcription repressor [N... [more]
XP_004344531.18.300e-1126.15hypothetical protein CAOG_06910 [Capsaspora owczar... [more]
CEM14917.12.000e-941.58unnamed protein product [Vitrella brassicaformis C... [more]
XP_004338209.13.500e-946.75eukaryotic translation initiation factor 3 subunit... [more]
CEP08033.11.300e-844.58hypothetical protein [Parasitella parasitica][more]
GAN01505.11.700e-844.58conserved hypothetical protein [Mucor ambiguus][more]
OAD08242.11.700e-844.58hypothetical protein MUCCIDRAFT_154865, partial [M... [more]
EPB85448.12.300e-843.37hypothetical protein HMPREF1544_07819 [Mucor circi... [more]
OBZ89547.13.900e-844.05Eukaryotic translation initiation factor 3 subunit... [more]
CBN78649.16.600e-856.14eukaryotic translation initiation factor 3 k subun... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007124NSK007124Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04530.2NO02G04530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G04530.1NO02G04530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575125gene_1046Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g20gene443Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04530.2NO02G04530.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G04530.1NO02G04530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04530 ID=NO02G04530|Name=NO02G04530|organism=Nannochloropsis oceanica|type=gene|length=1646bp
ACAGGGCGCGGCGAACCACAACCACGGCTCTGGTCTTCCCACCCATTGCC
TCCCCACCATCACCTACCGGCACGCCTAACGCAGCAGCCATGAGCCAAGC
GTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGACAGTGTGCACG
CCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGGTCAAGCCTTTG
GAGGAGTACTTGCTGCAACAGgtgggtagatgccatgggagggtttggga
ggaaggcatggggcttaaagatgtgcctgttgcatcgaatccgtcgcttg
ctgcgccaattacgctttgaatcgagagaaatgtcttctattctttatat
tctgccctgagagttcatttccagatctccagcaaggctgtctccccaat
cacaaacacctctcctacctattcacgtttcttgtctcccctttttccgt
atcagGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAGACCCTGCTC
AAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAAAGTTGAGAC
Ggtaagtttggagacccacgcatgtgggaaagaagggggagggactgaag
atggaacaagcagtgattgataaaattgaagaagagttcgaaatactcgc
aatttgcaatgcgggcttgtgcctagcgcgcgtgcaaatatggtggagac
gttcacgctcgctcgctcacttcctctttccccgaacaaccatcccacca
ctcacagATTCTGCTCAAAGCCCTGCTGAACCTCCCGGCCACGGACTTCA
CCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAGACAGATGTACGTACG
GACAGGTTAGAGTCGTGTGATTTGCGGAAGAAGCGTCTCTCTCTTGCCTC
CAGTAGGAATAAAAGACGATATCTGTTGCGCGCTTGCTCTGTGTGTGTGC
ATCGCACAGAATTACTCATAGCCACTCATTCATTTTACTGCGTCTTTCGT
ACTCTCCCGTTTCAGGAAACCGTCCTCACTATCAAGGACGCGGCCGAGGC
CTTGGAGACTGCGCGATATGCCAACTTTTGGTCAATTGTTAATAGCCGGG
GGGCAGTCTTTGCTGCCATTCCCACTTGGAAGGATGACATACGCAAGAGT
AAGTGGTTCGGTGAAGGAGGGAAGAATAATCATTGTTTCTTTATTATATG
TACTTTCGTGGTGTAGGGATTTGCCTCTCATACACTCATACCTTTTCCCT
CCCTCCCTCCTCGAAGTCATCTTGGTTGTGCACGCTGCCACGTACCAATC
AGCAGACAAATCGCACATCGGGGACGGCGTGGGGCTTTCCGGGGCCGCGC
TCGAGACCTTTTTGAAGGCTCAAGCAAATGATGGTGTGGTTGCCCGTGTG
GTGGAGGACCGCGTGGTTTTTGCATTCAACAAGGAGAATCAGCCGCGGGT
ACGGAAATTTAAGGAGACGGTTGACTTGCAAAATATGCTGGGAATTTTGA
ATCGCTTGGCGGCGTAAACAGGGCTTAGTGGATAGGCCGAACAGAGGGGC
CCAGGGGGAAGAGGAAAGAAATCTGCAGGACACTACAGTTAAAGAAAAAG
AAAATCAACATCTGCCGTGTCGCGTTGTTGTTGTTGTGTGGGTACT
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protein sequence of NO02G04530.2

>NO02G04530.2-protein ID=NO02G04530.2-protein|Name=NO02G04530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MSQASLTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSY
DFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEK
LQTDVRTDRLESCDLRKKRLSLASSRNKRRYLLRACSVCVHRTELLIATH
SFYCVFRTLPFQETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTW
KDDIRKSKWFGEGGKNNHCFFIICTFVV*
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protein sequence of NO02G04530.1

>NO02G04530.1-protein ID=NO02G04530.1-protein|Name=NO02G04530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MSQASLTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSY
DFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEK
LQTDETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTWKDDIRKII
LVVHAATYQSADKSHIGDGVGLSGAALETFLKAQANDGVVARVVEDRVVF
AFNKENQPRVRKFKETVDLQNMLGILNRLAA*
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Synonyms
Publications