NO02G04530, NO02G04530 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G04530 vs. NCBI_GenBank
Match: EWM30203.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 206.8 bits (525), Expect = 7.000e-50 Identity = 118/201 (58.71%), Postives = 128/201 (63.68%), Query Frame = 0 Query: 6 LTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKLQTDVRTDRLESCDLRKKRLSLASSRNKRRYLLRACSVCVHRTELLIATHSFYCVFRTLPFQETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTWKDDIRK 207 ++TGL P +Y+SVH++VLG+GLYTQEKVK LEEYL QV EGSYDFEANK+LLKLYLLYP AN E VETILLKALLNLPATDFTLLLYILPEKLQTD E VLTIKDAAEALETARYA+FWSI+NSR AVF AIP WKDDIRK Sbjct: 37 ISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTD----------------------------------------------------------ENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRK 179
BLAST of NO02G04530 vs. NCBI_GenBank
Match: XP_004344531.1 (hypothetical protein CAOG_06910 [Capsaspora owczarzaki ATCC 30864] >KJE96610.1 hypothetical protein CAOG_006910 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 77.0 bits (188), Expect = 8.300e-11 Identity = 51/195 (26.15%), Postives = 82/195 (42.05%), Query Frame = 0 Query: 12 MPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKLQTDVRTDRLESCDLRKKRLSLASSRNKRRYLLRACSVCVHRTELLIATHSFYCVFRTLPFQETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTWKDDIRK 207 +P + + G Y ++ LE+Y+ +QV +G+YDFE+N LL+LY +P+ N + +LLK LL LPA D+ L++L +KLQ D E++ I AA LE A++ FWS+VN+ + +P++ D+ RK Sbjct: 33 LPAGAADLRELLKGTDRYNPTHIERLEKYIQEQVTDGTYDFESNLALLRLYQFHPTKVNADASAQVLLKMLLVLPAGDYASSLFLLSDKLQAD----------------------------------------------------------ESIKNIVAAAHHLEAAQFIQFWSLVNATPKIKQLMPSFADEARK 169
BLAST of NO02G04530 vs. NCBI_GenBank
Match: CEM14917.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 72.4 bits (176), Expect = 2.000e-9 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0 Query: 25 GNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKAL-LNLPATDFTLLLYILPEKLQTDV--------RTDRLESCDLR 117 G GLY+ + ++ LEEYL QQ A +YD EAN T+LKLYL+YP +++V IL+KAL P DF L +Y LP D+ +L++CD + Sbjct: 14 GEGLYSADSLQTLEEYLDQQWANDTYDVEANLTILKLYLMYPQHMKKDRVRQILVKALGATFPQNDFQLCMYQLPPNRFRDMPEVTELVRLAAKLDTCDFK 114
BLAST of NO02G04530 vs. NCBI_GenBank
Match: XP_004338209.1 (eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff] >ELR16196.1 eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 71.6 bits (174), Expect = 3.500e-9 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 0 Query: 23 VLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100 VL G Y+ + + L+ YL +Q+ + SYDFEAN LLK++ PS + + V+ +L+KAL+NLP DF L LY+LPE Sbjct: 12 VLKKGRYSLDSLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPE 88
BLAST of NO02G04530 vs. NCBI_GenBank
Match: CEP08033.1 (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8 Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0 Query: 17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100 D++ + G LY + V LEEYL +Q G YD EAN +LKLY P+ A + + IL+KAL +PA DF L LY+L E Sbjct: 8 DNIATMINGVELYNPDNVSILEEYLSKQCESGEYDLEANLAILKLYQFNPTLAKEPIIVKILVKALTAIPAPDFNLCLYLLAE 90
BLAST of NO02G04530 vs. NCBI_GenBank
Match: GAN01505.1 (conserved hypothetical protein [Mucor ambiguus]) HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8 Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100 D++ + G Y E V LEEYL +Q G YD EAN +LKLY P+ A + + IL+KAL +PA DF L LY+L E Sbjct: 8 DNIATMINGVERYNPENVNVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAE 90
BLAST of NO02G04530 vs. NCBI_GenBank
Match: OAD08242.1 (hypothetical protein MUCCIDRAFT_154865, partial [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 69.3 bits (168), Expect = 1.700e-8 Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100 D++ + G Y E V LEEYL +Q G YD EAN +LKLY P+ A + + IL+KAL +PA DF L LY+L E Sbjct: 8 DNIATMINGVERYNPENVNVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAE 90
BLAST of NO02G04530 vs. NCBI_GenBank
Match: EPB85448.1 (hypothetical protein HMPREF1544_07819 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 68.9 bits (167), Expect = 2.300e-8 Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 0 Query: 17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPE 100 D++ + G Y E + LEEYL +Q G YD EAN +LKLY P+ A + + IL+KAL +PA DF L LY+L E Sbjct: 8 DNIATMINGVERYNPENINVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAE 90
BLAST of NO02G04530 vs. NCBI_GenBank
Match: OBZ89547.1 (Eukaryotic translation initiation factor 3 subunit K [Choanephora cucurbitarum]) HSP 1 Score: 68.2 bits (165), Expect = 3.900e-8 Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 17 DSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEK 101 + + + G Y E V LEEYL++Q YD EAN LLKLY PS A + + IL+KAL +PA DF L LY+L E+ Sbjct: 8 EKIATMINGVERYNTENVTVLEEYLIKQCESNEYDLEANLALLKLYQFNPSLAKEPVIIKILVKALTAIPAPDFNLCLYLLAEQ 91
BLAST of NO02G04530 vs. NCBI_GenBank
Match: CBN78649.1 (eukaryotic translation initiation factor 3 k subunit [Ectocarpus siliculosus]) HSP 1 Score: 67.4 bits (163), Expect = 6.600e-8 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0 Query: 45 VAEGSYDFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEKL 102 V G+YDFEANK LLKLY +P EKV +L KAL+N+P+TDF L+YI+P L Sbjct: 7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNL 63 The following BLAST results are available for this feature:
BLAST of NO02G04530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G04530 ID=NO02G04530|Name=NO02G04530|organism=Nannochloropsis oceanica|type=gene|length=1646bpback to top protein sequence of NO02G04530.2 >NO02G04530.2-protein ID=NO02G04530.2-protein|Name=NO02G04530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=229bpback to top protein sequence of NO02G04530.1 >NO02G04530.1-protein ID=NO02G04530.1-protein|Name=NO02G04530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top Synonyms
Publications
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