NO02G04510, NO02G04510 (gene) Nannochloropsis oceanica

Overview
NameNO02G04510
Unique NameNO02G04510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr2:1218590..1219884 -

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Properties
Property NameValue
DescriptionTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1218590..1219884 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of NO02G04510 vs. NCBI_GenBank
Match: EWM30342.1 (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 1.300e-95
Identity = 174/259 (67.18%), Postives = 207/259 (79.92%), Query Frame = 0
Query:   16 LVSIEPLDVATKTFVSFLLVSIVFFALFVIAPTNSKKTVKLQASWALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNADAVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVASRALVLPNVLNLYWGYLMFKGLAAVIF 275
            L S +PLDV  K  VSFLLVS VF+  F++     K   +L+ASWALKA+SVVHA VVA  S+W+L  E  +HEITTG+ Q +A +VR PL+HARSDV+A AAPLTLAYFLFDL L+PVWEGR AQ I +FLHHG+S++TWP G+CHPACH+FLLCCLSMEFSTPFVQYRWFI+QS+  GK+HPLY+ NG+IMT+AF  CRL PMLP N+WAI VS PHSA+SGLP  VR AS  LVLPN+LN YWGY+M KGL  V+F
Sbjct:    3 LTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNK-RLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLF 260          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: XP_013897317.1 (hypothetical protein MNEG_9666 [Monoraphidium neglectum] >KIY98297.1 hypothetical protein MNEG_9666 [Monoraphidium neglectum])

HSP 1 Score: 85.1 bits (209), Expect = 4.900e-13
Identity = 78/233 (33.48%), Postives = 110/233 (47.21%), Query Frame = 0
Query:   47 PTNSKKTVKLQASWALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNADAVRG-PLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLP--HNLWAISVSTPHSADSG--LPLLVR-VASRALVLPNVLNLYWGYLMFKGLAAVI 274
            P+  + T + Q  W  +  S VHAVVV      S LC   + ++ +G F   A A  G P +   + V  AA   +L YF  D  +V   E   +   P+ +HH L+LL+    +   A H ++L  L  E +TPFV  RW + ++ R      LYL NGL MT  +GACR+    P  H++WA      H  DS   +P   R V      L  VLNL W   M +G A ++
Sbjct:   40 PSYRRLTHEKQIDWNTRLPSTVHAVVV------SALC---LQQLLSGAFGAAASAADGVPAVLRATPVSWAAVGTSLGYFSADFFMVLSQEALYSG--PILVHHLLALLSLYTAIDTRAAHVYVLFGLFTEVTTPFVNLRWRLHEAGRAA--GRLYLWNGLAMTAVWGACRVAAFGPLFHHVWA------HYGDSQRFMPAYARWVLLGVPALLFVLNLLWFNKMVQGAAKLV 253          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: KYR01785.1 (hypothetical protein DLAC_01797 [Tieghemostelium lacteum])

HSP 1 Score: 79.3 bits (194), Expect = 2.700e-11
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 0
Query:  124 YFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVASR-ALVLPNVLNLYWGYLMFKGLAAVIFGS 277
            YFL+D LLV  +   L  +  +F HH L L  + +G+    CHF L+  +  E +TPFV +RW + Q++R  KD  LY++NGL + L F   R+   +P ++    +   +     LP  V   +    VL N+LN++W +L+++GL  + F S
Sbjct:  114 YFLYDTLLVCYYR-NLFDYGTLF-HHVLGLYLYNIGIVCGNCHFVLISYIFTEITTPFVNFRWILYQTNR--KDGLLYMINGLCLALGFLIVRVI-YIPLSI-GYQLYDKYPLSFALPEFVWYGTYFGFVLINLLNMFWAFLIWRGLIRLAFSS 261          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: XP_020434108.1 (TRAM [Heterostelium album PN500] >EFA81991.1 TRAM [Heterostelium album PN500])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 46/149 (30.87%), Postives = 80/149 (53.69%), Query Frame = 0
Query:  122 LAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVAS-RALVLPNVLNLYWGYLMFKGL 270
            L YF +D +++ +   ++       +HH + LL + +G+    CHF L+  +  E STPFV +RWF+ ++++  KD  +Y++NGL+M L F   R+  +        ++ T +     LP  +   +    V  N LN+YW YL+F+GL
Sbjct:   95 LGYFFYDTIILLINHSQIDS--ATLMHHLMGLLLYYLGISRKYCHFVLVSYMLTEVSTPFVNFRWFLYRTNK-SKDF-IYIINGLLMALGFLLARV--LYAPTTIGYALITKYPLSLNLPGYIWWGTYLGCVAINSLNMYWAYLIFRGL 237          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: KYQ89901.1 (hypothetical protein DLAC_08466 [Tieghemostelium lacteum])

HSP 1 Score: 74.3 bits (181), Expect = 8.600e-10
Identity = 69/253 (27.27%), Postives = 118/253 (46.64%), Query Frame = 0
Query:   29 FVSFLLVSIVFFA----LFVIAPTNSKKTVKLQASWALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNADAVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVASR-ALVLPNVLNLYWGYLMFKGLAAVIFGS 277
            F S  ++SI+F+     LF     N K   K Q  +  + VS V+AV+ +  +++ L  E  ++  T               +   + +        + Y ++DL L+  +   L       +HH L+L+ + +GL     +  L+  +  E +TPFV YRW +  + R  K++ +YLVNG +M + F   R+   +P  ++++ +   H     L  L R     AL++ NVLN YW YL++KG    I GS
Sbjct:    4 FNSIEIISIIFYTCNYLLFDKYLHNDKLNSKQQVEYISRIVSNVNAVITSILAIYCLHFEKQVYFQTP--------------MKGTTSIGIFLIQFIIGYMIYDLSLIFYFRSILLD-FGSLIHHALTLIIFNLGLISGNINVILILFILTEITTPFVNYRWILYNTGR--KENVVYLVNGALMAIGFLVVRVL-YVPIMVFSM-LQKHHDEFQTLGALERNCYYFALMIINVLNAYWSYLIWKGFIKAIVGS 237          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: XP_022037226.1 (transmembrane protein 56-like isoform X1 [Helianthus annuus] >OTG24207.1 putative TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Helianthus annuus])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 70/243 (28.81%), Postives = 111/243 (45.68%), Query Frame = 0
Query:   34 LVSIVFFALFVIAPTNSKKTVKLQ----ASWALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNADAVRGPLIHARSDVLA-AAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACR--LYPMLPHNLWAISVSTPHSADSGLPLLVRVASRALVLPNVLNLYWGYLMFKGL 270
            +  IV+    +I P   K  + L+      W  +  S  HA+VVA  S++ L+           +  L  +  R   I  RS  L+ A   +++ YFL DL+++ +W          FLHHGLSLL     L      F++L  L  E +TPFV  RW++  S +  K+  LY++NG+ +   + A R  L+     +++A           G    V +   AL L   +NL+W + +FKGL
Sbjct:   31 MCKIVYELTGIITPLIYKGFITLENAQKLEWKNRGFSTFHAIVVAIGSIYLLV-----------ISDLFDEHAREEWIINRSSALSDAILGISIGYFLTDLVMI-IWTYPTLGGFEYFLHHGLSLLAIGQSLLSGQVQFYILIVLFTEITTPFVNLRWYLDVSGK--KNSKLYMLNGVALFAGWLAARVILFIFFFSHMYAHLYQVKQVYPMGYYSTVTIPP-ALAL---MNLFWFWKIFKGL 255          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: OLP96300.1 (hypothetical protein AK812_SmicGene21458 [Symbiodinium microadriaticum])

HSP 1 Score: 68.6 bits (166), Expect = 4.700e-8
Identity = 62/205 (30.24%), Postives = 94/205 (45.85%), Query Frame = 0
Query:   60 WALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGV--FQLNADAVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPL-LVRVASRALVLPNVLNLYW 262
            WA   +S   A++      ++LL E      TT V  F+ + D V G   H+RS  L    P  LAYF +DLL + ++         + +HHGL LL WP+   + A ++++L  ++ E ST       + +    +G     Y V G    +AF   R  P  P   W++  S    AD  +P+ +  VA   L LP+ L LYW
Sbjct:   45 WANLLISNSQALISGSVGAYALLYEEPFASTTTKVLRFETSIDTVHG---HSRS--LEQVLPFILAYFAYDLLNMMMFMRDKPAEKLMLMHHGLCLLIWPLSFHYRAGNYYVLYFIAAELSTSLSWTAGYFL--PLYGITGIAYYVIGTFTLIAFTTVRALPS-PWIWWSLLASQSFWAD--VPVGIYAVAMLTLPLPSPLFLYW 239          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: XP_004352626.1 (TRAM [Cavenderia fasciculata] >EGG16173.1 TRAM [Cavenderia fasciculata])

HSP 1 Score: 68.2 bits (165), Expect = 6.100e-8
Identity = 44/160 (27.50%), Postives = 80/160 (50.00%), Query Frame = 0
Query:  122 LAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLP------HNLWAISVSTPHSADSGLPLLVRVASRALVLPNVLNLYWGYLMFKGLAAVIFG 276
            L YF++D  ++ V +  L   IP   HH ++LL +  G     CHF L+  +  E +TP V  RWF++++ +   +   Y+VNG++M   F   R+  +        +  ++++V+ P     G  +          + NVLN+YW +L+++GL   + G
Sbjct:  225 LGYFIYDTGVILVHQSLL--DIPTLTHHLMALLLYYWGKTSLYCHFVLISFMFTEITTPCVNIRWFLLRTKK--GESKAYIVNGMMMAFGFLIARVVYITASVGGALYKHYSVAVNLPSYIFWGTYV-------GYTIINVLNVYWAFLIWRGLLRAVLG 373          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: XP_014783289.1 (PREDICTED: transmembrane protein 56-B-like [Octopus bimaculoides] >KOF98246.1 hypothetical protein OCBIM_22026596mg [Octopus bimaculoides])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-7
Identity = 57/214 (26.64%), Postives = 98/214 (45.79%), Query Frame = 0
Query:   60 WALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNADAVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVASRALVLPNVLNLYWGYLMFKGLAAVI 274
            W  + +S +HA VV+    ++LL + G+ +                 I   + V+  +  + + Y + DL+++ V    + + +  F HHG S+  +   +      +F    L  EFSTPFV  RWF +    + K   L++VNG++MT+ F   R+  M  +     SV   HS  + L  +  V     V+ + +NLYW Y M  G+  V+
Sbjct:   54 WNTRVISSIHAAVVSSMCAYTLLYDAGLSK---------------DPIWWDAPVVRTSCAIVVGYMVADLIIMTVHYKTIGE-VFYFFHHGASIYAYVYVMTIGVLPYFANYRLIAEFSTPFVNQRWF-LDVLGYEKKSSLFVVNGIVMTIVFFLVRVACMPLYWYKVYSVCGTHSFIT-LGHMRYVLVFTCVVLDSINLYWFYRMCAGVRKVL 249          
BLAST of NO02G04510 vs. NCBI_GenBank
Match: XP_020182287.1 (transmembrane protein 56-B [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-7
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 0
Query:   60 WALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNADAVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHGLSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPLYLVNGLIMTLAFGACRL 218
            W  +  S VHA+V A  S + ++         +G+F ++   V G +I  +S +  +   +++ YFL DL ++ +W           LHHGLS+    + L     H ++L  L  E +TPFV  RW++  + +  KDH LYL NGL M + +   R+
Sbjct:   53 WNNRGFSTVHALVAAAVSFYLVM--------ISGLFSVD---VNGIIIDRKSWLSDSMFGVSIGYFLTDLTMI-LWHFPSLGGKEFLLHHGLSMYAICLALFSGKAHMYILMVLFTEATTPFVNLRWYLDVAGQ--KDHNLYLYNGLAMFVGWLIARI 196          
The following BLAST results are available for this feature:
BLAST of NO02G04510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30342.11.300e-9567.18TRAM, LAG1 and CLN8 lipid-sensing domain containin... [more]
XP_013897317.14.900e-1333.48hypothetical protein MNEG_9666 [Monoraphidium negl... [more]
KYR01785.12.700e-1133.77hypothetical protein DLAC_01797 [Tieghemostelium l... [more]
XP_020434108.11.000e-1030.87TRAM [Heterostelium album PN500] >EFA81991.1 TRAM ... [more]
KYQ89901.18.600e-1027.27hypothetical protein DLAC_08466 [Tieghemostelium l... [more]
XP_022037226.11.200e-828.81transmembrane protein 56-like isoform X1 [Helianth... [more]
OLP96300.14.700e-830.24hypothetical protein AK812_SmicGene21458 [Symbiodi... [more]
XP_004352626.16.100e-827.50TRAM [Cavenderia fasciculata] >EGG16173.1 TRAM [Ca... [more]
XP_014783289.11.400e-726.64PREDICTED: transmembrane protein 56-B-like [Octopu... [more]
XP_020182287.11.400e-730.38transmembrane protein 56-B [Aegilops tauschii subs... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007120NSK007120Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04510.1NO02G04510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04510.1NO02G04510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04510 ID=NO02G04510|Name=NO02G04510|organism=Nannochloropsis oceanica|type=gene|length=1295bp
ATGGCGGAGCCCGTCAAACCCACGTCCATGTCCCTGCACGCTTTGCTTGT
CTCCATCGAACCGCTGGACGTGGCCACCAAGACTTTTGTGTCCTTTCTAC
TCGTTTCCATTGTCTTTTTTGCCCTCTTTGTCATCGCGCCAACGAATAGC
AAGAAAACCGTGAAGCTTCAAGCGTCTTGGGCTTTGAAGGCGGTGTCGGT
CGTTCATGCCGTGGTGGTCGCAGGTGCCAGCGTCTGGTCATTGCTTTGTG
AGCCGGGGATACATGAGATTACAACTGGTGTATTTCAATTGAATGCCGAT
GCGGTACGCGGACCTTTGATTCATGCACGCAGCGACGTGCTCGCCGCAGC
GGCGCCTCTTACCCTAGCTTACTTTTTATTTGACCTGTTACTGGTGCCCG
TATGGGAAGGACGATTGGCGgtaagtgctaacattggaaagtggggctga
agaaggatcgacctgggttcgatgagggagaacgccttcggggggagcat
cgtatgtgtggaaagacaacgagcgcattgcctcgaatctacctgcatct
caccgataacgagtgcggaatcgatcataaaattcccattttcctccctt
ttcttcccgcttaatcaccatagCAACATATCCCCGTCTTCCTTCACCAC
GGTTTATCTCTCCTCACCTGGCCCGTCGGCCTCTGTCATCCCGCCTGCCA
TTTCTTCCTCCTCTGCTGCCTGAGCATGGAGTTTTCTACGCCCTTCGTAC
AGTACCGATGGTTCATCATCCAGAGCGACCGCCACGGCAAAGACCATCCG
CTTTACCTCGTTAACGGGCTGATAATGACTCTGGCCTTCGGCGCTTGTCG
GCTGTACCCGATGCTCCCTCACAACCTGTGGGCCATCAGTGTCTCGACCC
CGCACTCGGCTGATTCGGGTTTGCCGCTGCTGGTGCGCGTGGCAAGCAGA
GCGTTGGTGTTACCCAATGTCTTAAACTTGTATTGGGGGTACTTGATGTT
CAAGGGATTAGCCGCTGTGATTTTTGGCTCGAAGAAAGGAGGAACCCAGA
AGTCAGTAGCTGCAGCAGCAGCAACGGCAGCGGAAACAAAAACGACAGAC
ACAGTGGGAGAGATGAAGAAAAGGAGGAAAGGGGGCGTGGAATTTGCGGC
TACACCTTCATATGTTTCTAATTCATCGTCGCCACTGTCAATACCATCAC
AAAGAGCAGTGGCAGCTGCAGCGGAGGCAGCATCACCATCTCTCGCCAAT
AGACGAGTGACGCGAAGTAGCAGCAAGGGGTTGAAAGCAGCTTGA
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protein sequence of NO02G04510.1

>NO02G04510.1-protein ID=NO02G04510.1-protein|Name=NO02G04510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MAEPVKPTSMSLHALLVSIEPLDVATKTFVSFLLVSIVFFALFVIAPTNS
KKTVKLQASWALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNAD
AVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHG
LSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPL
YLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVASRA
LVLPNVLNLYWGYLMFKGLAAVIFGSKKGGTQKSVAAAAATAAETKTTDT
VGEMKKRRKGGVEFAATPSYVSNSSSPLSIPSQRAVAAAAEAASPSLANR
RVTRSSSKGLKAA*
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Synonyms
Publications