NO02G04440, NO02G04440 (gene) Nannochloropsis oceanica

Overview
NameNO02G04440
Unique NameNO02G04440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length276
Alignment locationchr2:1204999..1205274 -

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Properties
Property NameValue
DescriptionComplex 1 LYR protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1204999..1205274 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_005855897.1 (hypothetical protein NGA_2065400 [Nannochloropsis gaditana CCMP526] >EKU20460.1 hypothetical protein NGA_2065400 [Nannochloropsis gaditana CCMP526] >EWM30314.1 Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 128.6 bits (322), Expect = 9.700e-27
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = 0
Query:    7 ATSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYHNKREI 92
            A+  +AL LYRAIWRASR MPT RR++FVR KLR+E+EAAR ETD +K++FAL+YAALQLDT++IQAASL+KL CDP+YHNKREI
Sbjct:   16 ASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI 100          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: OQR81731.1 (hypothetical protein THRCLA_23308 [Thraustotheca clavata])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-10
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0
Query:   10 TRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYH 87
            ++AL  YRAI+RA+ DMP+  R+QFVR +LR EYE  R E +  +I F L  A  QLDT+KIQ A    +  DP YH
Sbjct:    4 SQALSYYRAIYRAAGDMPSKDRKQFVRQRLRVEYEKYRHEINPERIEFLLKVADTQLDTLKIQVAHFKNILSDPQYH 80          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_008863899.1 (hypothetical protein H310_02235 [Aphanomyces invadans] >ETW07806.1 hypothetical protein H310_02235 [Aphanomyces invadans])

HSP 1 Score: 68.6 bits (166), Expect = 1.200e-8
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0
Query:    2 PTTSSATSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYHNK 89
            P+T       AL LYR I+R +  MPT  R +FVR +LR EY+  R ETD  +I F +  A  QLDT++IQ     ++   P YHN+
Sbjct:   13 PSTQVTAMQIALSLYRKIYRTAGRMPTKDRTEFVRRRLRSEYDKYRHETDPERIEFLIKVADTQLDTLEIQVEHFDRVFSSPHYHNQ 99          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_009824523.1 (hypothetical protein H257_02538 [Aphanomyces astaci] >ETV86051.1 hypothetical protein H257_02538 [Aphanomyces astaci])

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-8
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    7 ATSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYHNK 89
            +T  +AL  YR I+R +  MPT  R +FVR +LR EY+  R ET+  +I F +  A  QLDT++IQ A  +++   P YHN+
Sbjct:    2 STRQQALSFYRKIYRTAGLMPTKDRTEFVRRRLRGEYDQYRHETNPARIEFLIKVADTQLDTLEIQVAHFSRVFSSPSYHNQ 83          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: GAQ78130.1 (hypothetical protein KFL_000080340 [Klebsormidium nitens])

HSP 1 Score: 67.4 bits (163), Expect = 2.600e-8
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 0
Query:   10 TRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKL 80
            +RAL LYRA +RA++ MPTA R+ ++R K R E+E  R ETD ++I   L +A LQLD ++IQA  L++L
Sbjct:    5 SRALALYRAFYRAAKSMPTANRRDYIRKKSRFEFEENRHETDPSRIRGLLQFADLQLDNVQIQAKHLSEL 74          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_008915091.1 (hypothetical protein PPTG_18671 [Phytophthora parasitica INRA-310] >ETI31081.1 hypothetical protein F443_21916 [Phytophthora parasitica P1569] >ETK71454.1 hypothetical protein L915_21312 [Phytophthora parasitica] >ETL24895.1 hypothetical protein L916_21182 [Phytophthora parasitica] >ETL78109.1 hypothetical protein L917_21037 [Phytophthora parasitica] >ETM31373.1 hypothetical protein L914_21052 [Phytophthora parasitica] >ETM99591.1 hypothetical protein PPTG_18671 [Phytophthora parasitica INRA-310] >ETO59783.1 hypothetical protein F444_21938 [Phytophthora parasitica P1976] >ETP00894.1 hypothetical protein F441_21799 [Phytophthora parasitica CJ01A1] >ETP29039.1 hypothetical protein F442_21777 [Phytophthora parasitica P10297])

HSP 1 Score: 67.0 bits (162), Expect = 3.500e-8
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0
Query:    8 TSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYH 87
            T    L LYRAI+RA+  MPT  R  +VR +LR EY+  R+E +  +ISF L  A  QLDT+++QA  L      P YH
Sbjct:    4 TRAEVLRLYRAIYRAAGKMPTRDRTNYVRRRLRHEYDQTREEINPERISFLLRLAETQLDTVEVQAQHLKSTFSSPDYH 82          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_024582031.1 (Complex 1 LYR protein [Plasmopara halstedii] >CEG45662.1 Complex 1 LYR protein [Plasmopara halstedii])

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0
Query:    8 TSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYH 87
            T   AL LYRAI+RA+  MPT  R  +VR +LR EY+  R+E +  +I F L  A  QL+T+++QA  LT     P YH
Sbjct:    4 TQAEALRLYRAIYRAAGKMPTRDRTSYVRRRLRHEYDNMREEKNPERIRFFLRLAETQLETVQVQAEHLTSTFSSPDYH 82          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_002181439.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47362.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-7
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 0
Query:    7 ATSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYH 87
            AT  +AL LYR + R +  MPT  R++FV  K R E+ + +  TD  +I F +  A   LDT+ IQA  LT+L  DP YH
Sbjct:    5 ATRAKALSLYRQLLRGAEKMPTPNRRKFVVKKTRTEFRSNKSLTDPDEIQFCIRLADTNLDTVMIQAEHLTRLMKDPTYH 84          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: XP_012197157.1 (hypothetical protein SPRG_03177 [Saprolegnia parasitica CBS 223.65] >KDO31961.1 hypothetical protein SPRG_03177 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 64.3 bits (155), Expect = 2.200e-7
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0
Query:   11 RALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYH 87
            +AL  YRAI+R +  MP+  R +FVR +LR EYE  R ET   +++F L  A  QLDT+++Q     ++  DP YH
Sbjct:    3 QALSFYRAIYRTAGLMPSKDRTRFVRRRLRAEYEKYRHETSPERVAFLLQVADTQLDTLRVQVDHYNQVFSDPSYH 78          
BLAST of NO02G04440 vs. NCBI_GenBank
Match: OQR92994.1 (hypothetical protein ACHHYP_03041 [Achlya hypogyna])

HSP 1 Score: 64.3 bits (155), Expect = 2.200e-7
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    8 TSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQETDATKISFALDYAALQLDTIKIQAASLTKLNCDPLYH 87
            T ++A+  YR+I+RA+  +P+  R QFVR +LR EYE    ET+  +ISF L  A  QLDT+ +Q     ++  DP YH
Sbjct:    2 TRSQAISFYRSIYRAAGLLPSKDRTQFVRRRLRSEYEKYLHETNPERISFLLQVADTQLDTLLVQVEHYNQVFSDPSYH 80          
The following BLAST results are available for this feature:
BLAST of NO02G04440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
XP_005855897.19.700e-2772.94hypothetical protein NGA_2065400 [Nannochloropsis ... [more]
OQR81731.16.300e-1050.65hypothetical protein THRCLA_23308 [Thraustotheca c... [more]
XP_008863899.11.200e-842.53hypothetical protein H310_02235 [Aphanomyces invad... [more]
XP_009824523.12.000e-842.68hypothetical protein H257_02538 [Aphanomyces astac... [more]
GAQ78130.12.600e-850.00hypothetical protein KFL_000080340 [Klebsormidium ... [more]
XP_008915091.13.500e-845.57hypothetical protein PPTG_18671 [Phytophthora para... [more]
XP_024582031.14.500e-845.57Complex 1 LYR protein [Plasmopara halstedii] >CEG4... [more]
XP_002181439.11.700e-743.75predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_012197157.12.200e-743.42hypothetical protein SPRG_03177 [Saprolegnia paras... [more]
OQR92994.12.200e-743.04hypothetical protein ACHHYP_03041 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007110NSK007110Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04440.1NO02G04440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100003g32gene433Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04440.1NO02G04440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04440 ID=NO02G04440|Name=NO02G04440|organism=Nannochloropsis oceanica|type=gene|length=276bp
ATGCCCACCACATCGTCCGCGACAAGCACCCGGGCCCTGCACCTGTACCG
TGCCATTTGGAGGGCCTCACGGGACATGCCCACAGCTCGTCGACAGCAGT
TTGTCAGAGGTAAGCTCCGGGATGAGTACGAGGCGGCGCGACAAGAGACA
GATGCAACCAAGATCTCATTTGCCTTGGATTATGCTGCCCTTCAATTGGA
CACTATCAAAATTCAGGCAGCGTCCCTGACCAAACTTAATTGTGACCCTT
TGTATCACAACAAACGCGAAATTTAG
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protein sequence of NO02G04440.1

>NO02G04440.1-protein ID=NO02G04440.1-protein|Name=NO02G04440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MPTTSSATSTRALHLYRAIWRASRDMPTARRQQFVRGKLRDEYEAARQET
DATKISFALDYAALQLDTIKIQAASLTKLNCDPLYHNKREI*
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Synonyms
Publications