NO02G04410, NO02G04410 (gene) Nannochloropsis oceanica

Overview
NameNO02G04410
Unique NameNO02G04410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2202
Alignment locationchr2:1195077..1197278 +

Link to JBrowse

Properties
Property NameValue
DescriptionScavenger receptor class b member 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1195077..1197278 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002159CD36
Homology
BLAST of NO02G04410 vs. NCBI_GenBank
Match: EWM30303.1 (scavenger receptor class b member 1 [Nannochloropsis gaditana])

HSP 1 Score: 1052.7 bits (2721), Expect = 4.800e-304
Identity = 506/694 (72.91%), Postives = 583/694 (84.01%), Query Frame = 0
Query:    1 MGRYDEDDTREAASKAEYSSLKDAINLNDDVYALPDRTSFFASRPLCGMWGGPRVWAIRRPSDRCGIILISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRDGEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVAGPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV 695
            MGRYDED+    A + EYSS KDA++  D  +  P+R SF   RP+CG+WGGPRVW IRR SDR G++LIS+A+VLG+LTACGP+IVD+LV  GIDAQTVLKG  GKA+ TFV+SG+N+GVEI+Y+L YLNLTNPTE+L GTA ARLEEVGPFVYRQ+R+KLN+TFA DGETVSF+L+KTY+FDE ANA TGLVDT   +TTVHPVIQVLQGQL+NTLN  L E++ P A GWLAP RR++ER+I+ASGLWKAVYKLVLCQGNPMGVSPFT Q+ARDLYWGYH DSVL  MQ LV AI+ LA ++ K ++LPV+PEAFPGLQPNLTSEAET RRIGPN+VYTGQG TKARLQ YTMFQNMT V ACPDPTTG  P   EMP+CD+YQA+W NRSA RHGY+PQWGS AAN+VRGTDGSLFAHPLTG++TVVTFQEDYRRW+EMVY+GEV DFHG+ LRRYVFSQ+DFRNDS M++D+YQ+NLP GL NLTLMGGFPL+LSKPH LEA+P VQ+AVEGL PDPE HLTFIDAEERSGVTFRTHKRVQLNAGL+RL FPSLSR +A  LAT+L+  LNE E RC+REEVTWDFGLP  G             MLFLPMV YDE F+M  SF  DFK QVLGS S AKT QVAGPLFAV+L L+GV++++RGRR E+ELA RRT RYST+ EGDI+V
Sbjct:    1 MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVWGGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHP-AIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDE----------HMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 683          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_005855019.1 (scavenger receptor class B, member 1, partial [Nannochloropsis gaditana CCMP526] >EKU21341.1 scavenger receptor class B, member 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 558.5 bits (1438), Expect = 2.900e-155
Identity = 271/364 (74.45%), Postives = 304/364 (83.52%), Query Frame = 0
Query:  331 TFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRDGEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVAGPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV 695
            T RRIGPN+VYTGQG TKARLQ YTMFQNMT V ACPDPTTG  P   EMP+CD+YQA+W NRSA RHGY+PQWGS AAN+VRGTDGSLFAHPLTG++TVVTFQEDYRRW+EMVY+GEV DFHG+ LRRYVFSQEDFRNDS M++D+YQ+NLP GL NLTLMGGFPL+LSKPH LEA+P VQ+AVEGL PDPE HLTFIDAEERSGVTFRTHKRVQLNAGL+RL FPSLSR +A  LAT+L+  LNE E RC+REEVTWDFGLP  G             MLFLPMV YDE F+M  SF  DFK QVLGS S AKT QVAGPLFAV+L L+GV++++RGRR E+ELA RRT RYST+ EGDI+V
Sbjct:    1 TARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQEDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEALSLATILQRDLNEAETRCVREEVTWDFGLPAEGDE----------HMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 354          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_018408784.1 (PREDICTED: lysosome membrane protein 2 [Nanorana parkeri])

HSP 1 Score: 135.2 bits (339), Expect = 7.800e-28
Identity = 130/497 (26.16%), Postives = 220/497 (44.27%), Query Frame = 0
Query:   65 CGIILISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVY-----LGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLT-LMGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            CGI+ +S+ +   +L      +  ++VE+ +   TVLK    +A++ +V+    I ++ +    + N+TNP EVL G  K  ++E+GP+VYR+YR K N+ F E+G  VS +  KTY+F+  A+   G   T  + T   PV+ +L+  LK+     +  +L+P  E  L  +   +                            FTT+T  ++ WGY  D +L    TLV+ ++              V E F GL  N+ +  +     G  +  +G        +EY  F  +                            EW  +       +  W S+  N + GTDG+ F HPL  KD ++  F  D  R +  VY     + E++ F  +P  + VF+      D+A         LP GL N++    G P+ LS PH  +A+  + +++EG+ P+ + H TF+D    +G+  R  KR+Q+N  + ++
Sbjct:    9 CGILSLSLLITSIVLLVVHTFM--EMVETEVKKVTVLKNGT-EAYNAWVDPPPPIYMKFY----FFNVTNPLEVLDG-EKPVVDEIGPYVYREYRPKENIEFLENGTEVSAVTPKTYVFE--ADLSKGNPMTDFVRTVNIPVVTLLEKVLKS----KIAGILRPIIEAALKTYNEGM----------------------------FTTRTVHEMLWGYK-DPLL----TLVHKVDS------------SVDEMF-GLFYNMNTTND-----GTYVFLSGS-------KEYKDFTQI---------------------------VEWNGKR-----NLSWWTSDRCNMINGTDGTSF-HPLINKDDIIYMFSSDLCRSLYAVYNSTKTVKEIAAFRFIPPAK-VFANVTINPDNAGFCVPAGNCLPSGLLNVSECKQGAPIILSSPHFYQADESIVKSIEGISPNQDDHETFMDINPLTGILLRAAKRMQVNVHVRQI 399          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_017496783.1 (PREDICTED: lysosome membrane protein 2 [Manis javanica])

HSP 1 Score: 134.8 bits (338), Expect = 1.000e-27
Identity = 127/495 (25.66%), Postives = 204/495 (41.21%), Query Frame = 0
Query:   64 RCGIILISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNL-TLMGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            RC    +    +L ++T+   ++V ++ +  +D QTV K    +  S   +S  N  + ++    + N+TNP E+L G    +LEEVGP+ YR+ RNK+++ F ++G T+S + KKTY+FD   N   G   T  + T   PV+  +     N   +H                R  +E  +EA       Y+  L          F T T  +L WGY  D +L    +L+N  +                   P + P               + Y   GT        T   N  +                          EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V + +  +     GLP  RY   +E   N S  A     +   L  G+ N+ T   G P+ +S PH  +A+     A++G+HP+ E H +F+D    +GV  R  KR+Q+N  +++L
Sbjct:    3 RCCFYTVGTLSLLLLVTSVA-LLVARVFQKAVD-QTVQKNIVLRNGSETFDSWRNTPLPVYTQFYFFNVTNPEEILRGET-PQLEEVGPYTYRELRNKVDIQFGDNGTTISAVSKKTYIFDR--NQSVGDPATDLIRTLNIPVLTAM-----NWAQIHF--------------LRELIEALLEA-------YQQTL----------FVTHTVDELLWGYK-DEIL----SLINIFK-------------------PDISPYF------------GLFYGRNGTDDGDYVFLTGKDNYLNFSKI---------------------VEWNGKTS-----LDWWTTDRCNMINGTDGDSF-HPLISKDEVLYIFPSDFCRSVYITF-SDFDSVEGLPAFRYEVPKEILANTSENAGFCIPKGNCLGSGVLNISTCKNGAPIVISFPHFYQADERFVSAIKGMHPNKEYHESFVDINPLTGVILRAAKRIQINVYVKKL 392          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_020039640.1 (lysosome membrane protein 2 [Castor canadensis])

HSP 1 Score: 134.4 bits (337), Expect = 1.300e-27
Identity = 129/513 (25.15%), Postives = 216/513 (42.11%), Query Frame = 0
Query:   74 LVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVH-PVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGD--SVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNLTL-MGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERLHFPSLSRWQAGGLATML--KMTLNE 578
            L L +L     ++V ++ +  +D QT+ K    +  +   +S +   + ++    + N+TNP E+L G  K RLEEVGP+ YR+ RNK NV F ++G T+S +  K Y+F+   +     +D   +I T++ PV+ V++      L V +  +L+                           Y+  L          F T T  +L WGY  +  S++H  ++ ++   GL                    Q N T++       G  +  TG+            + N T +                         EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V +++  +     GLP  RY    E   N S  A     E   L  G+ N+++   G P+ +S PH  +A+     A++G+HP+ E H TF+D    +G+  R  KR Q+N  +++L        + G + TM+   M LNE
Sbjct:   12 LSLLLLVTSVTLLVARVFQKAMD-QTIEKTMVLRNGTQIFDSWERPPLPVYTQFYFFNVTNPEEILQG-EKPRLEEVGPYTYRELRNKANVQFGDNGTTISAVSNKAYVFERNQSVGDPKID---LIRTLNIPVLTVIEWAQARFLRVLIEAMLK--------------------------AYQQKL----------FVTHTVDELLWGYKDEILSLIHTFRSDISPNFGLF------------------YQKNGTND-------GDYVFLTGEDN----------YLNFTKI------------------------VEWNGKTS-----LDWWTTDQCNMINGTDGDSF-HPLIAKDEVLYVFPSDFCRSVYIIF-SDFESVQGLPAFRYKVPAEILANTSDNAGFCLPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADEKFISAIDGMHPNKEDHETFVDINPLTGIILRAAKRFQINIYVKKLD----DFIETGNIRTMVFPVMYLNE 413          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: PNI82876.1 (SCARB2 isoform 16, partial [Pan troglodytes])

HSP 1 Score: 134.4 bits (337), Expect = 1.300e-27
Identity = 129/495 (26.06%), Postives = 214/495 (43.23%), Query Frame = 0
Query:   70 ISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFR-RIGP--NIVYTGQGTTKAR---LQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNLTL-MGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            +S+ L++  +T     +  K V+  I+ + VL+    +AF    +S +   + ++    + N+TNP E+L G    R+EEVGP+ YR+ RNK N+ F ++G T+S +  K Y+F+   +     +D   +I T++  I VL G            + Q   +  +AP      +  EAS  W     ++LC+    GV+         + W     S +  ++ ++ A+  L A   K      V E   G +  + S    FR  I P   + Y   GT       L     + N T +                         EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V + +  +     GLP  RY    E   N S  A     E   L  G+ N+++   G P+ +S PH  +A+     A+EG+HP+ E H TF+D    +G+  +  KR Q+N  +++L
Sbjct:    4 LSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGT-EAF----DSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGDPKID---LIRTLN--IPVLTGS---------CSVAQAGVQS-VAP-----SQLTEASTSWAP--GILLCRPGTPGVNHCAWAGPTVIEW-----SQVRFLREIIEAM--LKAYQQKLFVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFTKI------------------------VEWNGKTS-----LDWWITDKCNMINGTDGDSF-HPLITKDEVLYVFPSDFCRSVYITF-SDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNKEDHETFVDINPLTGIILKAAKRFQINIYVKKL 432          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_015354760.1 (PREDICTED: lysosome membrane protein 2 [Marmota marmota marmota])

HSP 1 Score: 133.7 bits (335), Expect = 2.300e-27
Identity = 122/487 (25.05%), Postives = 205/487 (42.09%), Query Frame = 0
Query:   74 LVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGD--SVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNLTL-MGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            L L +L     ++V ++ +  +D QT+ K    +  +   +S +   + ++    + N+TNP E+L G    RLEEVGP+ YR+ RNK NV F ++G T+S +  K Y+F+   +     VD                  L  TLN+ +  +++ +   +L   R  +E  ++A       Y+  L          F T T  +L WGY  +  S++HA ++ ++   GL                    + N T++       G  +  TG+            + N T +                         EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V + +  +     GLP  RY    E   N S  A     E   L  G+ N+++   G P+ +S PH  +A+     A+ G+HP+ E H TF+D    +G+  R  KR Q+N  +++L
Sbjct:   12 LSLLLLVTGVTLLVARVFQKAVD-QTIEKNMVLRNGTEIFDSWEKPPLPVYTQFYFFNVTNPEEILRGEI-PRLEEVGPYTYREIRNKANVQFGDNGTTISAVSNKAYVFERNQSVGDPKVD------------------LIRTLNIPVLTVIEWAQVRFL---RTLIEAMLKA-------YQQKL----------FVTHTVDELLWGYKDEILSLIHAFRSDISPYFGLF------------------YEKNGTND-------GDYVFLTGEDN----------YLNFTKI------------------------VEWNGKTS-----LNWWATDKCNMINGTDGDSF-HPLITKDEVLYVFPSDFCRSVYITF-SDFESVQGLPAFRYKVPAEILANTSDNAGFCLPEGKCLGSGVLNVSICKNGAPIIMSFPHFYQADEKFVSAIHGMHPNKEDHETFVDINPLTGIILRAAKRFQINIYVKKL 392          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_003832339.1 (PREDICTED: lysosome membrane protein 2 [Pan paniscus])

HSP 1 Score: 132.9 bits (333), Expect = 3.900e-27
Identity = 122/491 (24.85%), Postives = 208/491 (42.36%), Query Frame = 0
Query:   70 ISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGD--SVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNLTL-MGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            +S+ L++  +T     +  K V+  I+ + VL+    +AF    +S +   + ++    + N+TNP E+L G    R+EEVGP+ YR+ RNK N+ F ++G T+S +  K Y+F+   +     +D                  L  TLN+ +  +++ S   +L   R  +E  ++A       Y+  L          F T T  +L WGY  +  S++H  +  ++   GL                    + N T++       G  +  TG+ +          + N T +                         EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V + +  +     GLP  RY    E   N S  A     E   L  G+ N+++   G P+ +S PH  +A+     AVEG+HP+ E H TF+D    +G+  +  KR Q+N  +++L
Sbjct:   12 LSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGT-EAF----DSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGDPKID------------------LIRTLNIPVLTVIEWSQVRFL---REIIEAMLKA-------YQQKL----------FVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLF------------------YEKNGTND-------GDYVFLTGEDS----------YLNFTKI------------------------VEWNGKTS-----LDWWITDKCNMINGTDGDSF-HPLITKDEVLYVFPSDFCRSVYITF-SDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAVEGMHPNKEDHETFVDINPLTGIILKAAKRFQINIYVKKL 392          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_011782614.1 (PREDICTED: lysosome membrane protein 2 isoform X1 [Colobus angolensis palliatus])

HSP 1 Score: 132.9 bits (333), Expect = 3.900e-27
Identity = 123/491 (25.05%), Postives = 207/491 (42.16%), Query Frame = 0
Query:   70 ISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGD--SVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNLTL-MGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            +S+ L++  +T     +  K V+  I+ + VL+    +AF    +S +   + ++    + N+TNP E+L G    R+EEVGP+ YR+ RNK NV F ++G T+S +  K Y+F+   +     VD                  L  TLN+ +  +++ S   +L   R  +E  ++A       Y+  L          F T T  +L WGY  +  S++H  +  ++   GL                    + N T++       G  +  TG+            + N T +                         EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V + +  +     GLP  RY    E   N S  A     E   L  G+ N+++   G P+ +S PH  +A+     A+EG+HP+ E H TF+D    +G+  +  KR Q+N  +++L
Sbjct:   12 LSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGT-EAF----DSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANVQFGDNGTTISAVSNKAYVFERDQSVGDPKVD------------------LIRTLNIPVLTVIEWSQVHFL---REIIEAMLKA-------YQQKL----------FVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLF------------------YEKNGTND-------GDYVFLTGEDN----------YLNFTKI------------------------VEWNGKTS-----LDWWITDKCNMINGTDGDSF-HPLITKDEVLYVFPSDFCRSVYITF-SDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNKEDHETFVDINPLTGIILKAAKRFQINIYVKKL 392          
BLAST of NO02G04410 vs. NCBI_GenBank
Match: XP_023078280.1 (lysosome membrane protein 2 [Piliocolobus tephrosceles])

HSP 1 Score: 132.9 bits (333), Expect = 3.900e-27
Identity = 123/491 (25.05%), Postives = 207/491 (42.16%), Query Frame = 0
Query:   70 ISIALVLGILTACGPVIVDKLVESGIDAQTVLKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEVGPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMITTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGLWKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGD--SVLHAMQTLVNAIEGLAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKARLQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGYMPQWGSEAANQVRGTDGSLFAHPLTGKDTVV-TFQEDYRRWVEMVYLGEVSDFHGLPLRRYVFSQEDFRNDSAMASDFYQEN--LPMGLCNLTL-MGGFPLYLSKPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAGLERL 555
            +S+ L++  +T     +  K V+  I+ + VL+    +AF    +S +   + ++    + N+TNP E+L G    R+EEVGP+ YR+ RNK NV F ++G T+S +  K Y+F+   +     VD                  L  TLN+ +  +++ S   +L   R  +E  ++A       Y+  L          F T T  +L WGY  +  S++H  +  ++   GL                    + N T++       G  +  TG+            + N T +                         EW  +++     +  W ++  N + GTDG  F HPL  KD V+  F  D+ R V + +  +     GLP  RY    E   N S  A     E   L  G+ N+++   G P+ +S PH  +A+     A+EG+HP+ E H TF+D    +G+  +  KR Q+N  +++L
Sbjct:   12 LSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGT-EAF----DSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANVQFGDNGTTISAVSNKAYVFERDQSVGDPKVD------------------LIRTLNIPVLTVIEWSQVHFL---REIIEAMLKA-------YQQKL----------FVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLF------------------YEKNGTND-------GDYVFLTGEDN----------YLNFTKI------------------------VEWNGKTS-----LDWWITDKCNMINGTDGDSF-HPLITKDEVLYVFPSDFCRSVYITF-SDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNKEDHETFVDINPLTGIILKAAKRFQINIYVKKL 392          
The following BLAST results are available for this feature:
BLAST of NO02G04410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30303.14.800e-30472.91scavenger receptor class b member 1 [Nannochlorops... [more]
XP_005855019.12.900e-15574.45scavenger receptor class B, member 1, partial [Nan... [more]
XP_018408784.17.800e-2826.16PREDICTED: lysosome membrane protein 2 [Nanorana p... [more]
XP_017496783.11.000e-2725.66PREDICTED: lysosome membrane protein 2 [Manis java... [more]
XP_020039640.11.300e-2725.15lysosome membrane protein 2 [Castor canadensis][more]
PNI82876.11.300e-2726.06SCARB2 isoform 16, partial [Pan troglodytes][more]
XP_015354760.12.300e-2725.05PREDICTED: lysosome membrane protein 2 [Marmota ma... [more]
XP_003832339.13.900e-2724.85PREDICTED: lysosome membrane protein 2 [Pan panisc... [more]
XP_011782614.13.900e-2725.05PREDICTED: lysosome membrane protein 2 isoform X1 ... [more]
XP_023078280.13.900e-2725.05lysosome membrane protein 2 [Piliocolobus tephrosc... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007105NSK007105Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04410.1NO02G04410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550392gene_1032Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g36gene429Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04410.1NO02G04410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04410 ID=NO02G04410|Name=NO02G04410|organism=Nannochloropsis oceanica|type=gene|length=2202bp
ATGGGCCGTTATGACGAGGATGACACCCGTGAAGCTGCAAGCAAGgtacg
actacggggagtatcaagtcgattccccctcctactgctgacacccacca
cttcctttcacccctcacctcctctctttctccctttctccatccttccc
tcccttttcaagGCGGAATATTCTTCCCTGAAAGATGCCATCAATCTCAA
CGATGATGTGTACGCGCTTCCAGATCGTACATCCTTCTTTGCGAGTCGGC
CCCTCTGTGGCATGTGGGGCGGCCCCCGGGTTTGGGCCATCCGTCGGCCC
AGTGATCGGTGCGGCATTATATTGATCAGCATTGCGCTGGTATTGGGGAT
TCTTACAGCGTGTGGGCCGGTTATTGTGGATAAGTTGGTGGAGAGTGGGA
TTGATGCTCAGACTGTTTTGAAGGGGCCGAAGGGAAAGGCGTTTTCGACC
TTCGTGGAGAGCGGGGATAATATTGGGGTGGAGATTTTTTATGCGTTGAG
GTATTTGAACCTGACGAATCCGACCGAGGTATTGGCGGGGACGGCAAAGG
CACGGCTGGAAGAGGTGGGTCCGTTTGTGTACCGTCAGTACCGGAATAAA
CTGAATGTGACGTTCGCGGAGGATGGGGAGACGGTGAGTTTCATTTTGAA
GAAGACGTATATGTTTGATGAGGCGGCAAATGCGGACACGGGCTTAGTGG
ACACCCAAGCGATGATCACAACGGTGCATCCAGTGATCCAGGTACTGCAG
GGACAGCTGAAAAACACGCTGAATGTGCACCTGACTGAGCTTTTACAGCC
GTCTGCTGAGGGGTGGCTAGCCCCTTTCCGTCGCTCCGTGGAACGTCAAA
TTGAGGCTTCTGGCCTCTGGAAAGCCGTCTACAAGCTTGTCCTTTGCCAA
GGCAACCCCATGGGCGTCTCCCCCTTCACCACCCAAACCGCCCGCGACCT
CTACTGGGGATACCACGGTGACAGCGTCCTCCATGCTATGCAAACCCTCG
TGAACGCCATTGAAGGGCTCGCCGCCAAAATCAACAAAGAAATCGCCCTC
CCCGTCGTTCCCGAAGCCTTCCCCGGCCTTCAACCCAACCTCACCTCCGA
GGCTGAAACCTTCCGTCGCATTGGGCCGAATATTGTATACACTGGCCAGG
GGACGACCAAAGCCCGCCTCCAAGAATACACAATGTTCCAAAACATGACC
TCCGTCCGCGCCTGCCCCGACCCCACCACCGGCGCCATCCCCGAAGAGGA
CGAAATGCCCTCCTGCGATGTGTATCAAGCCGAGTGGGGCAATCGATCTG
CGGCCCGGCACGGGTACATGCCCCAGTGGGGTTCGGAGGCCGCGAACCAA
GTCAGGGGAACAGACGGGAGCTTGTTTGCGCACCCTTTGACGGGCAAAGA
CACGGTCGTGACATTTCAAGAGGATTATCGCCGCTGGGTGGAGATGGTGT
ATTTGGGGGAGGTGAGCGACTTCCATGGTTTGCCCTTGAGGAGGTATGTC
TTCAGCCAGGAGGATTTTAGGAATGATTCGGCCATGGCCAGTGATTTCTA
CCAGGAGAACTTGCCGATGGGTTTGTGCAATCTGACATTGATGGGAGGGT
TCCCCTTGTATCTGAGCAAACCGCATTTGTTGGAGGCGGAGCCTCTTGTC
CAAGAGGCAGTGGAGGGGTTGCATCCCGATCCGGAACGGCATTTGACTTT
TATTGATGCGGAGGAGCGGAGTGGGGTGACGTTTCGAACGCATAAGCGGG
TGCAGTTGAATGCGGGATTGGAGCGATTGCATTTTCCGAGCTTGTCTCGT
TGGCAGGCAGGCGGGTTGGCGACGATGTTGAAGATGACTTTAAATGAGAG
GGAAGGGCGGTGTATGAGGGAGGAGGTGACGTGGGATTTCGGATTACCGG
AGGCGGGAGGAAGGGACGGAGAGGCGGTGGAGGCGGAGTGGATGAGGATG
TTGTTTTTACCTATGGTGATTTATGACGAGAGCTTTCAGATGTCACCTAG
TTTCACGTCGGACTTTAAACATCAGGTGTTGGGGAGTGTGAGCGTGGCGA
AGACGACCCAGGTAGCTGGGCCGCTGTTTGCGGTGGTCTTGTTGTTAGTG
GGGGTGCTGGTGATGGTGAGGGGCCGGAGGAAGGAGAGGGAGTTGGCGGA
AAGGAGGACGCAAAGGTATAGTACAATGCAAGAGGGGGATATTCTGGTGT
AG
back to top

protein sequence of NO02G04410.1

>NO02G04410.1-protein ID=NO02G04410.1-protein|Name=NO02G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp
MGRYDEDDTREAASKAEYSSLKDAINLNDDVYALPDRTSFFASRPLCGMW
GGPRVWAIRRPSDRCGIILISIALVLGILTACGPVIVDKLVESGIDAQTV
LKGPKGKAFSTFVESGDNIGVEIFYALRYLNLTNPTEVLAGTAKARLEEV
GPFVYRQYRNKLNVTFAEDGETVSFILKKTYMFDEAANADTGLVDTQAMI
TTVHPVIQVLQGQLKNTLNVHLTELLQPSAEGWLAPFRRSVERQIEASGL
WKAVYKLVLCQGNPMGVSPFTTQTARDLYWGYHGDSVLHAMQTLVNAIEG
LAAKINKEIALPVVPEAFPGLQPNLTSEAETFRRIGPNIVYTGQGTTKAR
LQEYTMFQNMTSVRACPDPTTGAIPEEDEMPSCDVYQAEWGNRSAARHGY
MPQWGSEAANQVRGTDGSLFAHPLTGKDTVVTFQEDYRRWVEMVYLGEVS
DFHGLPLRRYVFSQEDFRNDSAMASDFYQENLPMGLCNLTLMGGFPLYLS
KPHLLEAEPLVQEAVEGLHPDPERHLTFIDAEERSGVTFRTHKRVQLNAG
LERLHFPSLSRWQAGGLATMLKMTLNEREGRCMREEVTWDFGLPEAGGRD
GEAVEAEWMRMLFLPMVIYDESFQMSPSFTSDFKHQVLGSVSVAKTTQVA
GPLFAVVLLLVGVLVMVRGRRKERELAERRTQRYSTMQEGDILV*
back to top
Synonyms
Publications