NO02G04380, NO02G04380 (gene) Nannochloropsis oceanica

Overview
NameNO02G04380
Unique NameNO02G04380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length408
Alignment locationchr2:1187706..1188113 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1187706..1188113 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009297DUF952
Homology
BLAST of NO02G04380 vs. NCBI_GenBank
Match: KPV50074.1 (hypothetical protein SE17_29075 [Kouleothrix aurantiaca])

HSP 1 Score: 90.1 bits (222), Expect = 5.600e-15
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPPTCPHVFGKIERDAVRAVKQVTREAGTGKFL 131
            IYHLA  + W    AE+  Y    L  +GF H T E+  +L +AN FYQ APG FV+L+ID  +LS+ +  E    P P +  P  P  PH++G I+R A+  V++V R A  G+F+
Sbjct:    2 IYHLAPAERWHTWPAEQ-PYTPAELAADGFVHCTGESSTMLAVANRFYQGAPGGFVMLLIDPERLSAPLRWEAPADPAPNAGPPLAPLFPHIYGPIDRAAIVDVREVQR-AADGRFV 116          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: XP_013896706.1 (hypothetical protein MNEG_10278 [Monoraphidium neglectum] >KIY97686.1 hypothetical protein MNEG_10278 [Monoraphidium neglectum])

HSP 1 Score: 84.7 bits (208), Expect = 2.400e-13
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKGD--WPLPGSDDPEPPTCPHVFGKIERDAVRAVKQVTREAGTGKFLSID 134
            +YHL +++ WE   AE +DY+  + E +GF H T E  L+L +AN FY    G F++L +D+ +L+SKVV E        P  +       PH++G I+  AV     V R A  G FL+I+
Sbjct:   11 LYHLVQQELWESVKAEHKDYYPPTFESDGFIHLTKEANLLLPVANHFYTGVQGAFLVLELDSTRLTSKVVFEPAAPVGSTPAKESQAQQLFPHLYGTIDAAAVVRELPVVR-AADGAFLAIE 131          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: PJF48892.1 (hypothetical protein CUN48_01120 [Chloroflexi bacterium])

HSP 1 Score: 83.6 bits (205), Expect = 5.300e-13
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVME--KGDWPLPGS--DDPEPPTC---PHVFGKIERDAVRAVKQVTREAGTGKFLSID 134
            I HLA + +W EA   E+ Y   SL  EGF HAT    L+L +AN  Y++ PG+FV+L +D  KL+S+V  E   GD   P +   D  P      PH++G I RDA+ AV+  TR+A  G F+  D
Sbjct:    2 ILHLAPRADW-EATPPEQPYRAASLATEGFIHATQGDALLLRVANTLYKNRPGEFVVLAVDESKLTSEVRWEAPTGDVIPPEATVSDTAPDDALRFPHIYGPINRDAIVAVRLATRDA-DGAFVGFD 126          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: PNW81813.1 (hypothetical protein CHLRE_06g261350v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 82.0 bits (201), Expect = 1.500e-12
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVME--------KGDWPLPGSD---DPEPPTCPHVFGKIERDAVRAVKQVTREAGTGKFLSI 133
            +YHL ++  W +  AE   YF  + +++GF H TAE + +L + N FY+   G F+LLV+D  KLS+KV+ E          D    G +     E P  PH++G I+  AV A   + R+A +G FLSI
Sbjct:    4 LYHLVQESIWAKCKAEGTAYFPPTYDQDGFIHLTAEPRFLLGVGNQFYKDVAGTFLLLVLDYEKLSAKVIFEPAAPVGSKSSDGLSAGGEAKAKEELPLFPHLYGTIDFGAVTAELPIERDA-SGAFLSI 132          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: XP_005788154.1 (hypothetical protein EMIHUDRAFT_122619 [Emiliania huxleyi CCMP1516] >EOD35725.1 hypothetical protein EMIHUDRAFT_122619 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 79.7 bits (195), Expect = 7.600e-12
Identity = 49/131 (37.40%), Postives = 66/131 (50.38%), Query Frame = 0
Query:   11 PSTIYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIAN-------AFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPPTCPHVFGKI-ERDAVRAVKQVTREAGTGKFLSID 134
            PS IYH+ +K  W+ A+A   +YF    + EGF HAT E  L+L + N         Y+   G F+ L IDT  L+S V ME     +P   +P P   PH+FG I     V    +V R+   G FLSI+
Sbjct:    9 PSVIYHVVQKSLWDAALASGVNYFPPRYDIEGFIHATHEANLLLGVLNWRHPKHGFIYKHIEGTFLCLAIDTAVLTSPVKMEAA---VPTESNPNPIAFPHIFGPILPLSCVTRQMEVVRDPQDGTFLSIE 136          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: KUJ67299.1 (hypothetical protein ACZ90_29970 [Streptomyces albus subsp. albus])

HSP 1 Score: 77.8 bits (190), Expect = 2.900e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPPTCPHVFGKIERDAVRAVKQVTRE 124
            I+HL R  +W   VA +R Y   SL +EGF H + +    L +ANAFY+  PG  + L++D  KL   V  E  D P P    P     PH++G I R AV  + +V R+
Sbjct:    2 IFHLVRLDDW--LVAPDRPYAPTSLAEEGFVHCSPDESTTLAVANAFYREVPGPLMALLVDEHKLDVMVRWEAAD-PAPPPGVPAGTLFPHIYGHIVRSAVEGMMEVVRD 108          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: XP_005789539.1 (hypothetical protein EMIHUDRAFT_252193 [Emiliania huxleyi CCMP1516] >EOD37110.1 hypothetical protein EMIHUDRAFT_252193 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.0 bits (188), Expect = 4.900e-11
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 0
Query:   11 PSTIYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIAN-------AFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPPTCPHVFGKI-ERDAVRAVKQVTREAGTGKFLSID 134
            PS IYH+ +K  W+ A+A   +YF    + EGF HAT E  L+L + N         Y+   G F+ L IDT  L+S V M      +P   +P P   PH+FG I     V    +V R+   G FLSI+
Sbjct:    9 PSVIYHVVQKSLWDAALASGVNYFPPRYDIEGFIHATHEANLLLGVLNWRHPKHGFIYKHIEGTFLCLAIDTAVLTSPVKMVAA---VPTESNPNPIAFPHIFGPILPLSCVTRQMEVVRDPQDGTFLSIE 136          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: WP_053134314.1 (DUF952 domain-containing protein [Streptomyces ambofaciens] >AKZ56956.1 hypothetical protein SAM23877_3911 [Streptomyces ambofaciens ATCC 23877])

HSP 1 Score: 76.6 bits (187), Expect = 6.500e-11
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPPTCPHVFGKIERDAVRAVKQV-TREAGTGKFLS 132
            IYH+    +W+      R Y   SL ++GF H + + +  LT+ +AFY+ AP   ++LVID  +L+++ V E  + P P    PE    PHVFG ++R+AVR V +V   EAG    LS
Sbjct:    2 IYHVVPLADWD--ADPGRPYAPASLAEDGFVHCSPDEETTLTVVDAFYRGAPRPLLVLVIDEERLTARCVWEAAE-PAPPPGVPEGTLFPHVFGPVDREAVRRVLEVGWDEAGRATGLS 117          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: KXZ52180.1 (hypothetical protein GPECTOR_10g809 [Gonium pectorale])

HSP 1 Score: 76.6 bits (187), Expect = 6.500e-11
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 0
Query:   17 LARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEK----GDWPLPGSDDPEPPTCPHVFGKIERDAVRAVKQVTREAGTGKFLSI 133
            + + + W  A    + YF  + E++GF H TA+ K +L I N FY++  G+F+LLV++  +L++KVV E     G     G    E P  PH++G I+  AV A   + R+A  G FL+I
Sbjct:    1 MVQAELWRAAKDSGKPYFPPTYEQDGFIHLTADPKFLLGIGNHFYRTVQGEFLLLVLEPERLAAKVVFEPAAPVGTKSAEGLSAEEAPLFPHLYGTIDYGAVTAELPIQRDA-EGAFLAI 119          
BLAST of NO02G04380 vs. NCBI_GenBank
Match: WP_095584414.1 (DUF952 domain-containing protein [Streptomyces albireticuli] >PAU45031.1 hypothetical protein CK936_31820 [Streptomyces albireticuli])

HSP 1 Score: 76.6 bits (187), Expect = 6.500e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 0
Query:   14 IYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAETKLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPPTCPHVFGKIERDAVRAVKQVTRE 124
            IYH+    +W      +R Y   SL  EGF H + + +  L +  AFY++ PG  ++L+ID  KL   V  E  D P P    PE    PHVFG+I RDAV  + +V R+
Sbjct:    2 IYHVVPLDDW--LAVPDRPYSPASLSDEGFVHCSPDEETTLAVVTAFYRATPGPLMVLLIDEHKLDVMVRWEAAD-PAPPPGVPEGTLFPHVFGRINRDAVDGMMEVQRD 108          
The following BLAST results are available for this feature:
BLAST of NO02G04380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KPV50074.15.600e-1541.03hypothetical protein SE17_29075 [Kouleothrix auran... [more]
XP_013896706.12.400e-1336.89hypothetical protein MNEG_10278 [Monoraphidium neg... [more]
PJF48892.15.300e-1341.73hypothetical protein CUN48_01120 [Chloroflexi bact... [more]
PNW81813.11.500e-1236.92hypothetical protein CHLRE_06g261350v5 [Chlamydomo... [more]
XP_005788154.17.600e-1237.40hypothetical protein EMIHUDRAFT_122619 [Emiliania ... [more]
KUJ67299.12.900e-1138.18hypothetical protein ACZ90_29970 [Streptomyces alb... [more]
XP_005789539.14.900e-1136.64hypothetical protein EMIHUDRAFT_252193 [Emiliania ... [more]
WP_053134314.16.500e-1137.82DUF952 domain-containing protein [Streptomyces amb... [more]
KXZ52180.16.500e-1135.83hypothetical protein GPECTOR_10g809 [Gonium pector... [more]
WP_095584414.16.500e-1138.18DUF952 domain-containing protein [Streptomyces alb... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04380.1NO02G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|149295gene_1029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04380.1NO02G04380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04380 ID=NO02G04380|Name=NO02G04380|organism=Nannochloropsis oceanica|type=gene|length=408bp
ATGTCGTCAGCACCGTCCACCCCCGAAGCGCCCTCCACCATCTATCACCT
TGCGCGAAAACAAGAATGGGAGGAGGCCGTGGCGGAAGAACGCGATTACT
TCACCGACTCCCTTGAAAAGGAAGGCTTCACGCACGCGACAGCTGAGACC
AAGCTCATTCTCACAATTGCTAACGCCTTCTATCAAAGCGCGCCGGGAGA
CTTTGTGCTCCTAGTCATCGACACGCCCAAACTCTCGTCCAAGGTGGTGA
TGGAAAAAGGTGATTGGCCTTTGCCTGGCTCAGACGATCCAGAACCTCCG
ACATGCCCCCACGTCTTTGGTAAGATTGAACGGGATGCTGTCCGGGCCGT
GAAGCAGGTAACGAGGGAGGCCGGAACGGGCAAGTTTCTGAGCATTGACA
TAGATTAG
back to top

protein sequence of NO02G04380.1

>NO02G04380.1-protein ID=NO02G04380.1-protein|Name=NO02G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MSSAPSTPEAPSTIYHLARKQEWEEAVAEERDYFTDSLEKEGFTHATAET
KLILTIANAFYQSAPGDFVLLVIDTPKLSSKVVMEKGDWPLPGSDDPEPP
TCPHVFGKIERDAVRAVKQVTREAGTGKFLSIDID*
back to top
Synonyms
Publications