NO02G04340, NO02G04340 (gene) Nannochloropsis oceanica

Overview
NameNO02G04340
Unique NameNO02G04340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1478
Alignment locationchr2:1172004..1173481 -

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Properties
Property NameValue
Description60s ribosomal protein l37a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1172004..1173481 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR002674Ribosomal_L37ae
Homology
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: EWM30340.1 (60s ribosomal protein l37a [Nannochloropsis gaditana])

HSP 1 Score: 183.3 bits (464), Expect = 6.100e-43
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAKAEGV 169
            MGKRTKKVGICGKYGTRYGASLRKIIKKIE+SQHSKYTCVFCGKDNVKREVVGIWKCGSC KSMAGGAY+LSTAAAVQVRSTLARLRKAKAE V
Sbjct:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: GAY06090.1 (60S ribosomal protein L37a putative [Pythium insidiosum] >GAY05694.1 60S ribosomal protein L37a putative [Pythium insidiosum])

HSP 1 Score: 154.1 bits (388), Expect = 4.000e-34
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:   66 SCNQLQSGKMGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRK 163
            S  +L+   +GKRTKKVGICGKYGTRYGASLRK++KKIE+SQH+KY C FCGKD++KR VVGIWKC SC+K+MAGGAY L+T +A  VRSTLARLRK
Sbjct:   10 SSARLEEASLGKRTKKVGICGKYGTRYGASLRKVVKKIEISQHAKYNCAFCGKDSIKRTVVGIWKCKSCHKTMAGGAYLLNTPSAATVRSTLARLRK 106
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: OQR95203.1 (60S ribosomal protein L37a [Achlya hypogyna] >OQS05184.1 60S ribosomal protein L37a [Thraustotheca clavata])

HSP 1 Score: 151.8 bits (382), Expect = 2.000e-33
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAKAEGV 169
            MGKRTKKVGICGKYG RYG+SLRK++KKIEVSQH+KY CVFCGKDNVKRE  GIWKC SC+K +AGGAY L+T +A  VRSTLARLRKA+   +
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRECTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: POM62129.1 (Ribosomal protein L37a [Phytophthora palmivora var. palmivora])

HSP 1 Score: 151.4 bits (381), Expect = 2.600e-33
Identity = 69/90 (76.67%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAK 165
            MGKRTKKVGICGKYGTRYG+SLRK++KKIE+SQHSKY CVFCGKD++KR V GIW+C SC+K++AGGAY L+TA+A  VRSTLARLRK +
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHSKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIR 90
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: XP_002902090.1 (60S ribosomal protein L37a, putative [Phytophthora infestans T30-4] >XP_008898039.1 ribosomal protein L37a [Phytophthora parasitica INRA-310] >AAY43417.1 ribosomal protein L37 [Phytophthora infestans] >EEY56762.1 60S ribosomal protein L37a, putative [Phytophthora infestans T30-4] >ETI32442.1 ribosomal protein L37a [Phytophthora parasitica P1569] >ETK72815.1 ribosomal protein L37a [Phytophthora parasitica] >ETL26267.1 ribosomal protein L37a [Phytophthora parasitica] >ETL79481.1 ribosomal protein L37a [Phytophthora parasitica] >ETM32734.1 ribosomal protein L37a [Phytophthora parasitica] >ETN16960.1 ribosomal protein L37a [Phytophthora parasitica INRA-310] >ETO61179.1 ribosomal protein L37a [Phytophthora parasitica P1976] >ETP02277.1 ribosomal protein L37a [Phytophthora parasitica CJ01A1] >ETP30468.1 ribosomal protein L37a [Phytophthora parasitica P10297] >KUF89858.1 60S ribosomal protein L37a [Phytophthora nicotianae] >KUG01157.1 60S ribosomal protein L37a [Phytophthora nicotianae])

HSP 1 Score: 150.2 bits (378), Expect = 5.700e-33
Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAK 165
            MGKRTKKVGICGKYGTRYG+SLRK++KKIE+SQH+KY CVFCGKD++KR V GIW+C SC+K++AGGAY L+TA+A  VRSTLARLRK +
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIR 90
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: XP_009522350.1 (putative ribosomal protein, partial [Phytophthora sojae] >EGZ19633.1 putative ribosomal protein, partial [Phytophthora sojae])

HSP 1 Score: 149.4 bits (376), Expect = 9.700e-33
Identity = 68/89 (76.40%), Postives = 81/89 (91.01%), Query Frame = 0 
Query:   76 GKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAK 165
            GKRTKKVGICGKYGTRYG+SLRK++KKIE+SQHSKY CVFCGKD++KR V GIW+C SC+K++AGGAY L+TA+A  VRSTLARLRK +
Sbjct:    2 GKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHSKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIR 90
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: XP_008606268.1 (60S ribosomal protein L43 [Saprolegnia diclina VS20] >EQC40569.1 60S ribosomal protein L43 [Saprolegnia diclina VS20])

HSP 1 Score: 149.4 bits (376), Expect = 9.700e-33
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAKAEGV 169
            MGKRTKKVGICGKYG RYG+SLRK++KKIEVSQH+KY CVFCGKDNVKR   GIWKC SC+K +AGGAY L+T +A  VRSTLARLRKA+   +
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRACTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: XP_012199042.1 (60S ribosomal protein L43 [Saprolegnia parasitica CBS 223.65] >KDO30234.1 60S ribosomal protein L43 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 149.4 bits (376), Expect = 9.700e-33
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAKAEGV 169
            MGKRTKKVGICGKYG RYG+SLRK++KKIEVSQH+KY CVFCGKDNVKR   GIWKC SC+K +AGGAY L+T +A  VRSTLARLRKA+   +
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRACTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: XP_024574270.1 (ribosomal protein l37a [Plasmopara halstedii] >CEG37901.1 ribosomal protein l37a [Plasmopara halstedii])

HSP 1 Score: 149.1 bits (375), Expect = 1.300e-32
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAK 165
            MGKRTKKVGICGKYGTRYG+SLRK++KKIE+SQH+KY CVFCGKD VKR V GIW C SC+K++AGGAY L+TA+A  VRSTLARLRK +
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDTVKRTVTGIWHCRSCHKTIAGGAYLLNTASAATVRSTLARLRKIR 90
[Close]
BLAST of NO02G04340 vs. NCBI_GenBank
Match: OWZ17845.1 (60S ribosomal protein L37a [Phytophthora megakarya])

HSP 1 Score: 149.1 bits (375), Expect = 1.300e-32
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = 0 
Query:   75 MGKRTKKVGICGKYGTRYGASLRKIIKKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAAVQVRSTLARLRKAK 165
            MGKRTKKVGICGKYGTRYG+SLRK++KKIE+SQH+KY CVFCGKD +KR V GIW+C SC+K++AGGAY L+TA+A  VRSTLARLRK +
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDAIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIR 90
The following BLAST results are available for this feature:
BLAST of NO02G04340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30340.16.100e-4395.7460s ribosomal protein l37a [Nannochloropsis gadita... [more]
GAY06090.14.000e-3473.2060S ribosomal protein L37a putative [Pythium insid... [more]
OQR95203.12.000e-3375.5360S ribosomal protein L37a [Achlya hypogyna] >OQS0... [more]
POM62129.12.600e-3376.67Ribosomal protein L37a [Phytophthora palmivora var... [more]
XP_002902090.15.700e-3375.5660S ribosomal protein L37a, putative [Phytophthora... [more]
XP_009522350.19.700e-3376.40putative ribosomal protein, partial [Phytophthora ... [more]
XP_008606268.19.700e-3374.4760S ribosomal protein L43 [Saprolegnia diclina VS2... [more]
XP_012199042.19.700e-3374.4760S ribosomal protein L43 [Saprolegnia parasitica ... [more]
XP_024574270.11.300e-3276.67ribosomal protein l37a [Plasmopara halstedii] >CEG... [more]
OWZ17845.11.300e-3275.5660S ribosomal protein L37a [Phytophthora megakarya... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007096NSK007096Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04340.1NO02G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575053gene_1023Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g42gene423Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04340.1NO02G04340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04340 ID=NO02G04340|Name=NO02G04340|organism=Nannochloropsis oceanica|type=gene|length=1478bp
GGGATTTCGGCGGTCTCGAGTCCTTCCTTCCGCGTGTGGTGGTGAAGCAC
ACTAGCGAGCGACGGATTAGGACGAGGGAGATGCGCGTCTACACCACCCG
AGTCTTTGTGGCTTGATGGAGCAGGACGGATGTTGTTGATTGTGTATTTC
CTTTTCACCCTCATCCTCACCCGTTCTTTACCCAACGGACGGCTCCCAGG
CATCCATCGCTCGCGCCGTACATGCAGGGCAAACAGGCACGCCTGGGCCG
TTCCTTGAGTCTCTAAGTTACGCCTAGTAAGAGGCACATTATTATGGTGC
CGTATGCCTGGTGGAGATGGCAGGACGGGAAGTCAGACGCTTTCGCTCGC
AACCCGCTGCTTCCCAGGCATCATCATCCAACAAAGAAGCAAGGCAACCA
TCACAGGCCCTCATCATGCTCATGCTCACTTTCGACCCCTCACTCACACC
ACACACACCACACGCCCCCATCTTAAATACCTTCGTCGCTATAAACCATC
TTGCAATCAACTTCAGTCAGGCAAAATGgtacgtggcacggcgtagaggc
tcaagtcagggagggaggggtgggtgggtgggtgggtgggatggcgaatg
acgcggacgacacggtgatggaggtgtgttggggcagcactggctccagc
acagtagcagccgcaacagtggcagcgatcgtagcggtcgtagctgtggc
ttcggtggcaacattggcaacggaaggctcaggcgtattacggccggcct
tgcaaatgggagcatttctcctctcctggttcagcctcttgttcttctac
cgagctttccatcttgcgcggtgcagcttttattgaagtagatttcaatc
atgacacaagctaattataacatcattcactcatcttcttttatccaact
acccacaaccgtcaatcaaataacacagGGCAAGCGCACGAAGAAGGTTG
GGATTTGCGGGAAGTATGGCACACGCTATGGTGCCTCCCTCCGTAAGATC
ATCAAGAAGATCGAAGTTTCCCAGCACTCCAAGTATACATGCGTTTTCTG
CGGGAAGGACAACGTGAAGCGAGAGGTGGTGGGCATCTGGAAGTGCGGCT
CGTGCAACAAGAGCATGGCGGGCGGGGCTTACTCCCTTTCTACTGCTGCC
GCTGTCCAAGTCCGCTCGACCCTGGCCCGCCTACGCAAGGCCAAGGCTGA
GGGCGTCTAAGCACCCTTTCTTAGTTTGTCGTCAGTGGAGTGATCAGTCG
AAGAAGGAGGAAAAGAGGGATCGGGGGAAAGCGAGGGCTTTGGACGAAAC
AATGGTTGGCGTCGGTTTGAAACAAACCGTGACCGAATGGGTCGTCGGCG
CCTGCTTGGCATGAAAACTTATCACAAAGAAAGAATCACCCAGGCAGACA
TAAATGAAAAATGGTAGAAAGAAAGGGCGAAATATTACAGTTCGTTTTAC
CGATGAAAACGATACCCTCTAGGGAACA
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protein sequence of NO02G04340.1

>NO02G04340.1-protein ID=NO02G04340.1-protein|Name=NO02G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MPGGDGRTGSQTLSLATRCFPGIIIQQRSKATITGPHHAHAHFRPLTHTT
HTTRPHLKYLRRYKPSCNQLQSGKMGKRTKKVGICGKYGTRYGASLRKII
KKIEVSQHSKYTCVFCGKDNVKREVVGIWKCGSCNKSMAGGAYSLSTAAA
VQVRSTLARLRKAKAEGV*
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Synonyms
Publications