NO02G04300, NO02G04300 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G04300 vs. NCBI_GenBank
Match: EWM30224.1 (trna pseudouridine synthase a [Nannochloropsis gaditana]) HSP 1 Score: 474.9 bits (1221), Expect = 1.900e-130 Identity = 228/300 (76.00%), Postives = 250/300 (83.33%), Query Frame = 0 Query: 10 DYTPRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310 DYTPR WWK+PTVPMTRFVARLAY+GTHFNGWQ+QVKSRTVQLEVER++N++LA P S LLDKVCIRAVAAGRTDAGVHARGQVIHFDYP VA + EFE LN L D+R+WN+SHAPPPR NLA QGDWHAMYNS KLYTYRFSTR+VADP R VPRGE LDL KLA++ SIFEG HDYQNFANRL HKRRMSK+GEEF+T R+V SV+LV E EY + V LDGALQRMVRNM+GGLW+VARGDM ELRRALDGPLY GRSPIRAAPAHGLT EWVYYDD+ Sbjct: 46 DYTPRAWWKNPTVPMTRFVARLAYDGTHFNGWQFQVKSRTVQLEVERAINSTLAACPDSDLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPAVAAGRFTVQEFETKLNEGLVSDVRLWNVSHAPPPREKNLAVQGDWHAMYNSRSKLYTYRFSTRAVADPLHRNYCCAVPRGEALDLRKLAELTSIFEGKHDYQNFANRLQHKRRMSKRGEEFSTVRHVRSVELVSEAPEEYAIHVLLDGALQRMVRNMVGGLWAVARGDMSEAELRRALDGPLYAKGRSPIRAAPAHGLTLEWVYYDDF 345
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005854069.1 (trna pseudouridine synthase a, partial [Nannochloropsis gaditana CCMP526] >EKU22290.1 trna pseudouridine synthase a, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 298.9 bits (764), Expect = 1.800e-77 Identity = 142/187 (75.94%), Postives = 155/187 (82.89%), Query Frame = 0 Query: 123 DIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310 D+R+WN+SHAPPPR NLA QGDWHAMYNS KLYTYRFSTR+VADP R VPRGE LDL KLA++ SIFEG HDYQNFANRL HKRRMSKKGEEF+T R+V SV+LV E EY + V LDGALQRMVRNM+GGLW+VARGDM ELRRALDGPLY GRSPIRAAPAHGLT EWVYYDD+ Sbjct: 3 DVRLWNVSHAPPPREKNLAVQGDWHAMYNSRSKLYTYRFSTRAVADPLHRNYCCAVPRGEALDLHKLAELTSIFEGKHDYQNFANRLQHKRRMSKKGEEFSTVRHVRSVELVSEAPEEYAIHVLLDGALQRMVRNMVGGLWAVARGDMSEAELRRALDGPLYAKGRSPIRAAPAHGLTLEWVYYDDF 189
BLAST of NO02G04300 vs. NCBI_GenBank
Match: CBJ31003.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 177.6 bits (449), Expect = 6.100e-41 Identity = 112/295 (37.97%), Postives = 155/295 (52.54%), Query Frame = 0 Query: 25 TRFVARLAYEGTHFNGWQYQVKS-RTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQR--RTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKG--EEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDME---ADEL--RRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310 TRFV+R+ Y+GT++ G+Q Q TVQ +E++L+ T + VAAGRTD GVH+ GQ +HFD P ++L + +N +P D+RVWN+S APP + W +M N+ GK Y+YR V P R R + G +++D L + G HD+ F+N + + + K+ EF T R V S +++ E G RLD LDGAL RMVRNM+G L +VA G +E DE+ R D L I AAPAHGLT + V YD Y Sbjct: 137 TRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQT----------YVPVVAAGRTDTGVHSVGQAVHFDLPN---ANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRL-------IYAAPAHGLTLDTVLYDGY 411
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005705360.1 (tRNA pseudouridine synthase A [Galdieria sulphuraria] >EME28840.1 tRNA pseudouridine synthase A [Galdieria sulphuraria]) HSP 1 Score: 175.3 bits (443), Expect = 3.000e-40 Identity = 108/284 (38.03%), Postives = 153/284 (53.87%), Query Frame = 0 Query: 26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310 R+ R+AY+GT F+GWQ+Q K R+VQ +E+ L+ L S IR + AGRTD+GVHARGQV HFD V+ + E LN L DIRV+++ P + + +WHA++++ K+Y+YRFS DP +RR R R +L++L +F GTHD+ +F +R + M K R + + LV E YRL+ L+GAL RM+RN+ L+ VA ++ D+L L R +AAPAHGL E V YDDY Sbjct: 73 RYRLRVAYDGTDFSGWQFQEKRRSVQGVLEQVLSKRLNRS----------IRIIGAGRTDSGVHARGQVAHFD----TVSFSDCPHLEYTLNRMLSGDIRVYDLQQKEPISSD---PRNNWHAIFSARKKVYSYRFSIAKELDPLERRFRFHFYR--RCNLERLYDATKVFLGTHDFTSFCSRNTEMKEMEK-----NMCRTIYRIDLVHESGDSYRLEYELNGALYRMIRNITSSLFFVASDELTLDDLNEILHA---KDRRRAPKAAPAHGLCLERVIYDDY 329
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_009034438.1 (hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens] >EGB10860.1 hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens]) HSP 1 Score: 164.5 bits (415), Expect = 5.400e-37 Identity = 114/287 (39.72%), Postives = 146/287 (50.87%), Query Frame = 0 Query: 25 TRFVARLAYEGTHFNGWQYQV-KSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFST-RSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310 TR+ R+AY+GT F GWQ Q +RTVQ E LNA+L T I + A RTDAGVHARGQ H D P + L E +N LP D RV ++ AP P+ WHA+ N+ GK Y YR + R ADP R R V ++D +L S F G HD+ FAN + + G +T R + S L+ E G+ L LDGAL +MVRN++G +VA G + D + AL P +P +AAPA GL E VYYDDY Sbjct: 33 TRYALRVAYDGTRFKGWQVQPGGARTVQGE----LNAALRTR-----FGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHVAY-RDVDFGRLDDALSCFVGEHDFAAFAN---NAPGLDPSGAARSTTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAI-PALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_002180785.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47437.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 161.4 bits (407), Expect = 4.500e-36 Identity = 113/311 (36.33%), Postives = 161/311 (51.77%), Query Frame = 0 Query: 24 MTRFVARLAYEGTHFNGWQYQVKSRTV-------------QLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQG---DWHAMYNSCGKLYTYRFSTRSVADPFQRRTR-----VTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKE-REGEYRLDVRLDGALQRMVRNMMGGLWSVARGDM--EADELRRALDGPLYPPGR--SPIRAAPAHGLTCEWVYYDD 309 + R+ AR+AY+GT F G+Q Q ++ V + + +R++ L T ++ V R VAAGRTDAGVHARGQ IHFD V+ T + E L LP D+ +WN+ AP R + Q W+ MY++ KLY+YR ST +V DP R+ R V + L +L ++ +EGTHD++ FA+ + + S T R V SV +V E EG+ R+D L GAL + VRNM+G + RG++ E+D LR D R +P + AP GLT E VY+ D Sbjct: 36 VVRYRARVAYDGTSFQGFQIQGSNKVVDDKNCNGITHQNRKDKQQRTVQGELETVLSTRWNQPV--RVVAAGRTDAGVHARGQAIHFDV-NVSETPTDHASLERSLARMLPTDVTLWNLQFAPSARTKLVDGQERVLPWNVMYDNTHKLYSYRLSTAAVMDPLSRQHRWHPDNVDAYVVGKAGLAQLTRLLKHYEGTHDFRAFASAMEQLEKHS--DGPIDTVRTVYSVNVVPEANEGDVRIDFVLKGALYKQVRNMVGTVLETCRGEIMKESDMLRLLQDATASGLSRADNPSKPAPPQGLTLENVYFGD 341
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005718675.1 (unnamed protein product [Chondrus crispus] >CDF38770.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 160.6 bits (405), Expect = 7.700e-36 Identity = 112/305 (36.72%), Postives = 151/305 (49.51%), Query Frame = 0 Query: 26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGE--FEAGLNARLPPDIRVWNISHAP---PPRV-----NNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDK--LAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTK------RYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDME---ADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310 R AR+AY+GT + GWQYQ TVQ +E +L + IR V A RTD GVHARGQ +HFD P E F LN LPPD+RV +S AP P +V N A WHA+YN+ GKLYTYR ST V DP R R R + + L + ++ F G+HD+ F N + F R++ S ++ E G YR++ ++GA+ RM+RN+MG + SV+ G M+ D L + D L P ++APA GL E V YD++ Sbjct: 55 RIRARVAYDGTLYRGWQYQTDQPTVQGALEDALRRKFGHT----------IRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTN-------STNPPPGFVPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASKDRRLVP------KSAPAKGLCLEKVIYDEW 336
BLAST of NO02G04300 vs. NCBI_GenBank
Match: GAX27892.1 (tRNA pseudouridine38-40 synthase [Fistulifera solaris]) HSP 1 Score: 156.4 bits (394), Expect = 1.500e-34 Identity = 109/303 (35.97%), Postives = 152/303 (50.17%), Query Frame = 0 Query: 26 RFVARLAYEGTHFNGWQYQVK-SRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNL--AAQGDWHAMYNSCGKLYTYRFSTRSVADPFQR--RTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKERE--GEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDG----------PLYPPGR---SPIRAAPAHGLTCEWVYYDD 309 R+ AR+AY+G F+G+Q Q + RTVQ +E L L S +R V AGRTD GVHARGQ IHFD + + L + E +NA LP D+ +WN+S AP + Q W+ +YNS GKLY+YR V P +R R G+ +D+ L ++ + +EGTHD++ FA L +R S G +T R V S + E E G YR++ L GAL + VRNM+G +R + + L G P R + + AP GLT E VY+D+ Sbjct: 23 RYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQS----------VRLVGAGRTDTGVHARGQAIHFDLH--SPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALEANQRRS--GRTVSTVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFDE 311
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_016429912.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina sp. HGH0030] >EPD49553.1 tRNA pseudouridine(38-40) synthase [Paenisporosarcina sp. HGH0030]) HSP 1 Score: 149.1 bits (375), Expect = 2.300e-32 Identity = 97/285 (34.04%), Postives = 141/285 (49.47%), Query Frame = 0 Query: 24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 M R A + Y+G F G+Q Q +RTVQLE+ER L + + +R VA+GRTDAGVHA GQVIHFD E+ ++ LN +LP DIRV ++ D+HA Y + GK+Y Y++ V PF+R V +P G D++++ + A F GTHD+ +F S + E R + ++L++ GE + + DG L MVR + G LW V G E ++ L + + APAHGL E V+Y + Sbjct: 1 MKRLKAIIMYDGYGFAGYQVQPNARTVQLELERVL---------TKMHKGTIVRVVASGRTDAGVHATGQVIHFDTDLQFPIER----WQRALNVQLPGDIRVVSVEE----------VSSDFHARYGTSGKVYRYKWGLGDVESPFKRHYVVYMP-GINPDIERMREAAQAFLGTHDFTSFC---------SARTEVVDRVRTIKRLELLENEHGELHMIIEGDGFLYNMVRIIAGNLWEVGIGRREPGDMALMLAA---MDRKKAGKTAPAHGLYLESVFYSE 249
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_075620168.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina indica]) HSP 1 Score: 148.3 bits (373), Expect = 4.000e-32 Identity = 96/285 (33.68%), Postives = 142/285 (49.82%), Query Frame = 0 Query: 24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309 M R A + Y+G+ F G+Q Q RTVQLE+ER L + + V +R VA+GRTDAGVHA GQVIHFD + + ++ LN +LP DIRV ++ D+HA Y + GK+Y Y++ V PF+R V +P G ++++ ++ + A F G HD+ +F S + E R ++ + L++ E + + DG L MVR + G LW V G E E+ L+ + + APAHGL E V+Y D Sbjct: 1 MKRLKAVIMYDGSGFAGYQVQPNERTVQLELERVL---------TKMHKGVKVRVVASGRTDAGVHATGQVIHFD----TDLQFPIDRWQRALNVQLPGDIRVVSVQE----------VSSDFHARYGTLGKVYRYKWCLGDVESPFKRHYVVHMP-GAKVNIPRMREAAQAFLGVHDFTSFC---------SARTEVVDRIRTISRLDLIEVERDELHMIIEGDGFLYNMVRIIAGNLWEVGIGRREPSEMATILEA---IDRKKAGKTAPAHGLYLENVFYSD 249 The following BLAST results are available for this feature:
BLAST of NO02G04300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G04300 ID=NO02G04300|Name=NO02G04300|organism=Nannochloropsis oceanica|type=gene|length=1093bpback to top protein sequence of NO02G04300.1 >NO02G04300.1-protein ID=NO02G04300.1-protein|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bpback to top Synonyms
Publications
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