NO02G04290, NO02G04290 (gene) Nannochloropsis oceanica

Overview
NameNO02G04290
Unique NameNO02G04290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr2:1164805..1165461 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1164805..1165461 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G04290 vs. NCBI_GenBank
Match: EWM30343.1 (hypothetical protein Naga_100003g48 [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 1.200e-38
Identity = 87/117 (74.36%), Postives = 103/117 (88.03%), Query Frame = 0 
Query:  102 GVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRTPRSRLLEAKDQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRERILQDSKDLQKMLAAGGGR 219
            G+SPRS +AL KL+ Y  + +ALE  +A +E  LQDYPRTPR+RLLEAKDQIAQMNG+LEKLQY+GVDSIITAELESGKE+AKEKRK+LNQRCD+LRERILQ+S+DL KML AG G+
Sbjct:   98 GLSPRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERILQNSRDLAKMLTAGAGK 214
[Close]
BLAST of NO02G04290 vs. NCBI_GenBank
Match: XP_008611380.1 (hypothetical protein SDRG_07330 [Saprolegnia diclina VS20] >EQC35096.1 hypothetical protein SDRG_07330 [Saprolegnia diclina VS20])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:  104 SPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRT---PRSRLLEAKDQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRERIL 203
            S  S AAL  L      +  LE  V ++E  +  +  T   P+S L+E+KD IAQM GSL+KLQ+ GVD IITA+L +GK+  +++RK LN++C+A+R  +L
Sbjct:    9 SSASEAALQSLNNLQLAIAKLERRVKEIEWQVAVHNATANVPKSELVESKDAIAQMCGSLDKLQFHGVDGIITADLVTGKDDIRDQRKLLNKQCEAIRSTML 110
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BLAST of NO02G04290 vs. NCBI_GenBank
Match: OQR93765.1 (hypothetical protein ACHHYP_02310 [Achlya hypogyna])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 0 
Query:  100 TLGVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRT---PRSRLLEAKDQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRERILQDSKDLQKMLAA 215
            T   S  S AAL  +      +  +E  V ++E  +  +  T   PR  L EAKD +AQ+ G+L+KLQ++GVD IITA+L SGK+  +++RK LN++C+ +R  +L   + L   +AA
Sbjct:    7 TRAYSSSSEAALQSISNLQLAIVKIERRVKEIEWQVTVHNATAKVPRKELAEAKDALAQLCGTLDKLQFNGVDGIITADLVSGKDHVRDQRKQLNRQCETIRTTMLSLHEQLTAHIAA 124
[Close]
BLAST of NO02G04290 vs. NCBI_GenBank
Match: OQR94734.1 (hypothetical protein THRCLA_22215 [Thraustotheca clavata])

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-10
Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 0 
Query:  104 SPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRT---PRSRLLEAKDQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRERILQDSKDLQKMLAA 215
            S  S AAL  +    + +  LE  V ++E  +  +  T    +  L+E+K+ IAQ+ GSL+KLQY GVD IITA+L++GK+  +E+RK LN++C+++R  ++   + L+  +AA
Sbjct:   10 SSSSEAALQNISTCKEAIVTLERRVKEIEWQVTVHNATSGVSKEELIESKETIAQLYGSLDKLQYHGVDGIITADLKTGKDHVREQRKELNRQCESIRTLMMSLHQQLKAQVAA 123
[Close]
BLAST of NO02G04290 vs. NCBI_GenBank
Match: XP_012197713.1 (hypothetical protein SPRG_03754 [Saprolegnia parasitica CBS 223.65] >KDO31834.1 hypothetical protein SPRG_03754 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.1 bits (183), Expect = 3.000e-10
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 0 
Query:  100 TLGVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRT---PRSRLLEAKDQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRERILQDSKDLQKMLAA 215
            T   S  S AAL  L      +  LE  V ++E  +  +  T   P+  L+E+KD IAQM GSL+KLQ++GVD IITA+L +GK   +++RK LN++C+++R  +L     L   +AA
Sbjct:    5 TRAYSSASEAALQSLNNLQLAIAKLERRVKEIEWQVAVHNATANVPKKELVESKDAIAQMCGSLDKLQFNGVDGIITADLVTGKADIRDQRKLLNKQCESIRTTMLSLHAQLTSHVAA 122
The following BLAST results are available for this feature:
BLAST of NO02G04290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM30343.11.200e-3874.36hypothetical protein Naga_100003g48 [Nannochlorops... [more]
XP_008611380.11.400e-1044.12hypothetical protein SDRG_07330 [Saprolegnia dicli... [more]
OQR93765.11.400e-1038.14hypothetical protein ACHHYP_02310 [Achlya hypogyna... [more]
OQR94734.11.400e-1037.72hypothetical protein THRCLA_22215 [Thraustotheca c... [more]
XP_012197713.13.000e-1039.83hypothetical protein SPRG_03754 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007091NSK007091Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04290.1NO02G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575041gene_1018Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g48gene418Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04290.1NO02G04290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04290 ID=NO02G04290|Name=NO02G04290|organism=Nannochloropsis oceanica|type=gene|length=657bp
ATGATGAGCCGGTTTGCGTCCTTCTTTGGGCGCGCCGCCGAGGACGAAGA
CGAGGAAGCCAACGCCTCTGCCCCAGCTCCCACGCCTGCAACTGTCCCGC
ACCAGTCCACTCGCCATTCCTCCCGTCAGCCTGCCTCGTCCCCGCCAAAG
CAGTCGTCCTCTACATCCGCCTCCAACAGCACTAACCGGCCTCGCTCGGG
GAGCAGCAGCAGCAGCGGGAGCGGGGGCAACTCGAGACACAAAGGTGGGA
AGCGAAAAGCCAGCACGGTCAAGGCGCAAGCTGCGGCCATGGGCGTGACA
CTGGGCGTTTCGCCTCGCTCGGCCGCTGCTTTGAATAAGTTGCAGCGTTA
TAATCAGGAGTTGGAGGCCCTTGAGAATGAAGTGGCAGACATGGAGGCAG
CGTTACAAGACTATCCCCGCACGCCCCGATCCCGGCTGTTGGAAGCTAAG
GATCAGATTGCCCAGATGAATGGGAGTTTGGAGAAGCTCCAGTACAGTGG
CGTCGATTCTATTATAACAGCTGAATTGGAGAGTGGGAAGGAACGGGCGA
AGGAGAAGCGGAAGTCGTTGAACCAACGGTGTGATGCTTTAAGGGAGCGG
ATTTTGCAGGATTCGAAGGATTTGCAGAAGATGCTGGCGGCTGGGGGTGG
GAGGTAG
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protein sequence of NO02G04290.1

>NO02G04290.1-protein ID=NO02G04290.1-protein|Name=NO02G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MMSRFASFFGRAAEDEDEEANASAPAPTPATVPHQSTRHSSRQPASSPPK
QSSSTSASNSTNRPRSGSSSSSGSGGNSRHKGGKRKASTVKAQAAAMGVT
LGVSPRSAAALNKLQRYNQELEALENEVADMEAALQDYPRTPRSRLLEAK
DQIAQMNGSLEKLQYSGVDSIITAELESGKERAKEKRKSLNQRCDALRER
ILQDSKDLQKMLAAGGGR*
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Synonyms
Publications