NO02G04280, NO02G04280 (gene) Nannochloropsis oceanica

Overview
NameNO02G04280
Unique NameNO02G04280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr2:1163240..1164442 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1163240..1164442 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_domain
Homology
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BLAST of NO02G04280 vs. NCBI_GenBank
Match: EWM30266.1 (hypothetical protein Naga_100003g49 [Nannochloropsis gaditana])

HSP 1 Score: 266.5 bits (680), Expect = 6.700e-68
Identity = 139/201 (69.15%), Postives = 158/201 (78.61%), Query Frame = 0 
Query:    9 LFLSLMATAGAFFLP----SATPHGTRMSAGREQDSSTSLERRDLLQNSVGQVLGLSALMLGRANLMGTPQQAQAAVGEGGLPAVTEAFQRVLRGQREWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEKRDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSDVPDEL 206
            L L+ +  A AF +P     +     R+SAG  +D  TSLERR  L NS+ Q + LS  M G A  +  P QA AAVGEGGLPAVTEAFQRV+RGQREW KVGKTIADREGKLAD EWVNTQIFLRNSYMVGEDMRR+VRD++  KR+KGTAIAK+FQRLTLDMDKP K KDFQGFIEAQKKGA+YF++F+ LLSDVPDEL
Sbjct:    8 LILATIVGAAAFVVPPLSLPSRDFKIRLSAGGNEDCGTSLERRSALHNSLCQAVTLSMFMFGGATWISAPSQAMAAVGEGGLPAVTEAFQRVIRGQREWNKVGKTIADREGKLADEEWVNTQIFLRNSYMVGEDMRRIVRDAEESKREKGTAIAKDFQRLTLDMDKPTKSKDFQGFIEAQKKGASYFQDFIDLLSDVPDEL 208
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BLAST of NO02G04280 vs. NCBI_GenBank
Match: CBN74857.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.6 bits (231), Expect = 7.700e-16
Identity = 63/211 (29.86%), Postives = 99/211 (46.92%), Query Frame = 0 
Query:    4 KCGIVLFL-------SLMATAGAFFLPSATPHGTRMSAGREQDSSTSLERRDLLQNSVGQVLGLSALMLGRANLMGTPQ--QAQAAVGEGGLPAVTEAFQRVLRGQREWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEKRDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSDVPDEL 206
            KCG + F+       +  A AG    PS     TRM+ G        + R        G++LG  A + G   +   P+   A+  VGEGGLP     F  +++ Q++WA +GK+I  +   +   EW N  +FLR  Y +G ++  +      +K+    A+ +  Q+     D PA+ KD   F++AQ      FE+F+ L +DVP EL
Sbjct:   41 KCGAISFVRKQHAPAARAAAAGVGPDPSCRSRATRMTTGALPSDGGGMSRGQW----AGRMLG--AAITGAVAVSQGPEFASAEVGVGEGGLPDGARQFSNLVKVQKDWAALGKSIERQGADVTADEWKNVALFLRKVYQLGGELEYLAGTFPPDKKKSALALVRSIQKEVQAADVPAREKDAAAFMKAQASVQKKFEDFMELFNDVPSEL 245
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BLAST of NO02G04280 vs. NCBI_GenBank
Match: XP_005826157.1 (hypothetical protein GUITHDRAFT_165053 [Guillardia theta CCMP2712] >EKX39177.1 hypothetical protein GUITHDRAFT_165053 [Guillardia theta CCMP2712])

HSP 1 Score: 80.5 bits (197), Expect = 6.800e-12
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 0 
Query:   25 ATPHGTRMSAGREQDSSTSLERRDLLQNSVGQVLGLSALMLGRANLMGTPQQAQAA-VGEGGLPAVTEAFQRVLRGQREWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEKRDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSD----------VPDEL 206
            ATP   RM          S+ RRD    S+G       +ML  A ++   +   A  V +GGLP     +  +++ +++W ++G  +++   ++++ EW N Q +LR  +  G+DM  V +    E++     ++KEF++    +DKPA  KD++ F+   K    Y +EF  + S           VPDEL
Sbjct:   43 ATPLALRMQ---------SVNRRD----SIG-------IMLATAGMLAQTKDVGAKDVADGGLPGGLAEYMSIIKSKKQWGEIGNRVSNGHAEMSEEEWKNVQGYLRKFFDTGKDMEVVAKAFSPEEQKAVAEVSKEFRKAVKGIDKPAAAKDWETFMAQHKVILGYIDEFQDIRSGKKKIQSNAQYVPDEL 214
[Close]
BLAST of NO02G04280 vs. NCBI_GenBank
Match: CEM14000.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 76.6 bits (187), Expect = 9.800e-11
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 0 
Query:   74 PQQAQAAVGEGG-LPAVTEAFQRVLRGQREWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEKRDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSDVPDEL 206
            P  A A V  G  LPA      R ++ +  W ++G  +  R   +   EW   + FLR  Y   +DMR + +  D EK  +   + K F++    MDKPA   D + F+ +Q+K     ++FL +LSDVPDEL
Sbjct:  117 PVSAYADVYSGDTLPAGALQRDRFIKAKLRWEEMGSALRARTDDITADEWKGLRNFLRAMYKESDDMRFISKGLDPEKDKQSKQLIKNFEKTIESMDKPATAGDKEVFLASQQKITQTMQDFLDVLSDVPDEL 249
The following BLAST results are available for this feature:
BLAST of NO02G04280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM30266.16.700e-6869.15hypothetical protein Naga_100003g49 [Nannochlorops... [more]
CBN74857.17.700e-1629.86conserved unknown protein [Ectocarpus siliculosus][more]
XP_005826157.16.800e-1227.60hypothetical protein GUITHDRAFT_165053 [Guillardia... [more]
CEM14000.19.800e-1133.83unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007090NSK007090Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04280.1NO02G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575040gene_1017Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g49gene417Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04280.1NO02G04280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04280 ID=NO02G04280|Name=NO02G04280|organism=Nannochloropsis oceanica|type=gene|length=1203bp
ATGATTCACAAGTGCGGCATCGTCCTATTTTTGTCCCTGATGGCGACGGC
AGGTGCGTTTTTTCTGCCTTCGGCCACTCCCCATGGTACCAGAATGAGCG
CCGGGCGGGAGCAGGACAGCAGCACGAGCTTGGAGCGTCGCGACCTCCTG
CAAAACTCGGTGGGCCAGGTGCTGGGTTTGTCGGCACTCATGCTAGGCAG
GGCTAATCTCATGGGGACGCCGCAACAGGCGCAGGCAGCAGTGGGGGAGG
gtacgtttacggatggggaaagaattatgtgcagcgctgtagcagaatgt
atggatggagtaaagcacacatacaggtatcgcccgaccactttcattca
cacacgaaaatgaaacttgtgcatcgttttagGTGGTCTCCCTGCTGTGA
CAGAGGCTTTTCAGCGCGTGCTTCGGGGCCAACGGGAGTGGGCTAAGGTG
GGCAAGACCATTGCGGACCGAGAGGGGAAGCTGGCGGATGCTGAGTGGGT
GAACACGCAAATCTTCTTGCGgtgcgttcaaagagggattgggggaagag
ggtgtttggttcccaaaaataattgctagccgaaaaatggtagggagagt
aatgaggggccgagctggaaggaggaagactagaaacccctcacgcgcgc
cgttgggcgctcgtccagccgaggcaccagaatgtccgtccctccttctt
tatgggtatcgataaaaccgtcactgctcatctaaccccctcccacaccc
agCAATTCGTACATGGTGGGCGAGGACATGCGCCGGGTGGTCCGCGACTC
GGACGGAGAAAAGCGGgtaggtcatgaagaaggcgaaggatggaaggagg
gtgactccacggaaaagtggatggatgagatgtatgcttgcatcagccgt
tagccagttttcttgattgtttcagtcgcgtacattcgtagtaagggaat
caagtcctgctccgtgactcatgaactcgccacctctcacccctctttct
cgccttcctcttgtcccttcccaacccaattgaaacagGATAAGGGTACA
GCCATCGCCAAAGAGTTCCAACGTTTGACACTGGACATGGACAAGCCTGC
CAAGGGCAAAGATTTCCAGGGGTTCATTGAAGCGCAGAAGAAAGGCGCGG
CCTACTTTGAAGAATTTCTTGCCTTATTGAGTGATGTGCCGGACGAGCTG
TAA
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protein sequence of NO02G04280.1

>NO02G04280.1-protein ID=NO02G04280.1-protein|Name=NO02G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MIHKCGIVLFLSLMATAGAFFLPSATPHGTRMSAGREQDSSTSLERRDLL
QNSVGQVLGLSALMLGRANLMGTPQQAQAAVGEGGLPAVTEAFQRVLRGQ
REWAKVGKTIADREGKLADAEWVNTQIFLRNSYMVGEDMRRVVRDSDGEK
RDKGTAIAKEFQRLTLDMDKPAKGKDFQGFIEAQKKGAAYFEEFLALLSD
VPDEL*
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Synonyms
Publications