NO02G04210, NO02G04210 (gene) Nannochloropsis oceanica

Overview
NameNO02G04210
Unique NameNO02G04210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1394
Alignment locationchr2:1148751..1150144 -

Link to JBrowse

Properties
Property NameValue
DescriptionComplex 1 LYR protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1148751..1150144 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
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BLAST of NO02G04210 vs. NCBI_GenBank
Match: EWM30274.1 (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 4.200e-26
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    5 PASALVLYRRVLRSLRQFDDPGKKWYYRNWARNNIATFDDEEDSERLVQLLRKGEEHRSWILKKYRLPD 74
            PASA+ LYRRVLRSLRQFDDPGKKWYYRNW RNNIATF+DE+D ERL QLL+KGEEHR WI+KKY L D
Sbjct:    4 PASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKD 72
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BLAST of NO02G04210 vs. NCBI_GenBank
Match: XP_004333222.1 (complex 1 protein (lyr family) protein [Acanthamoeba castellanii str. Neff] >ELR11209.1 complex 1 protein (lyr family) protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 63.5 bits (153), Expect = 3.300e-7
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0 
Query:    2 STTPASALVLYRRVLRSLRQFDDPGKKWYYRNWARNNIATFDDEEDSERLVQLLRKGEEHRSWILKKYRLPD 74
            S     AL LYR +LR+LR+FDD   + YY N+AR +     +EED ER+ +++ +G+    W+  KY L D
Sbjct:   12 SVHSVEALRLYREILRTLRRFDDRATRIYYYNYARTHFMQHQEEEDEERVQEIIERGKNDLRWLKAKYGLDD 83
The following BLAST results are available for this feature:
BLAST of NO02G04210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30274.14.200e-2682.61Complex 1 LYR protein [Nannochloropsis gaditana][more]
XP_004333222.13.300e-740.28complex 1 protein (lyr family) protein [Acanthamoe... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007082NSK007082Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04210.1NO02G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575019gene_1011Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g55gene411Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04210.1NO02G04210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04210 ID=NO02G04210|Name=NO02G04210|organism=Nannochloropsis oceanica|type=gene|length=1394bp
CGCGTCATCATGACGCATCCGTCCCTTCTTCCTTTCGCCCCATATTTACG
CACCATCTCACCGGCGTTCAAGGCCCCACGGCTTCGTCAACATCGCCTAA
GCAACGCCAGTCTTTTTCCTAGCCGCCTCTATTAACTAACCTTTTCCTCC
GCCCGATCAACAGGGACTACGAGCTGCTTACTCGCATCTATCCTTCCAGC
CTCCCCACCCCCTCCGTCACTACTATAGGCATGTCTACGACACCCGCTTC
GGCCTTGGTCCTTTACCGCCGGGTACTGCGCAGTCTGCGGCAATTTGATG
ATCCGGGGAAGAAATGgtacgtgcctgcatgataatttgcgggtgcattg
agtagatggcgccgataaagcctgcatgtactgtgctcttgcttcgacgt
caatttattcatcccctttatcaactacacagtattaatccacacaattt
tcacctccacatgctcacttcgaataaaaagGTATTATCGAAATTGGGCG
CGCAATAACATCGCCACGTTCGATGACGAAGAAGACTCGGAGCGGCTTGT
GCAGTTGTTGAGAAAGGGAGAAGAACATCGTTCGTGGATTCTCAAGAAAT
ATAGATTGCCTGATCCATTGGCAGGCAAATTATGAAATTACGGTGGAGGC
ATCAGCAGGCAAAATGATGAAAATATGACGTGGACATTGACAGGCAAATG
ATGAAAATACGACGGAAACAGTGACCTGAAGAGGCTAGTGTATAACAAGC
TTTTGAAAAGGAAGCAGGCGAAAAGAAGCACTCATGCTGCTTTCCATCTC
CCAATCAGTGCCTGAGCTTATATATCGTTACGTTCCGTGTCTCGTCCATT
CTCTTCTTTTGCTGCCTGCACTCAAATAACTACTTTGTGCTTGCTTTGTA
TATTTTGTCAATTTTTGGCGGTCTGTCTCCGGCACTAAATAGCCTTTTAT
TTGGTCATTCTGATACAAATGCTTAAAAGCGTTCGTCGTTCCTCAACCGC
TGGTAGCCTCGGCGTCTGCCGAAGCCAGGGCCTTCCTCCTGTCCTCCCTC
TTCCCCCTCCTCCGACGCATCGTCCGGCCTTCCTTCTTCTCGTTCTCCCG
CATCTCCCCTCTGTCCCCGCACTGCCAAGGCAACATGTCCCTCCTCATTT
CCTTCCCCTCCCACCATCATAAATGCACCCCCTTCCTTCTCCTCCTCCTC
CGTATGCCCCATTGCTAGCTGCTGCTGCTCCTGCTGCTCATTGCGCTGTT
GCCTCCCCCTCCTCTCCTGCCTCCCCTCCTCCACTTCTACAATCAACGCC
TGCAGCCTTCCCCCCAACACTAGCCCTCCCACCGGTCTCTCAGGCACCTC
CTCGTCATATACTCCCCCTCCTCCTCGCCCCCCTCCTCCCCTCC
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protein sequence of NO02G04210.1

>NO02G04210.1-protein ID=NO02G04210.1-protein|Name=NO02G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MSTTPASALVLYRRVLRSLRQFDDPGKKWYYRNWARNNIATFDDEEDSER
LVQLLRKGEEHRSWILKKYRLPDPLAGKL*
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Synonyms
Publications