NO02G03920, NO02G03920 (gene) Nannochloropsis oceanica

Overview
NameNO02G03920
Unique NameNO02G03920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3103
Alignment locationchr2:1071461..1074563 +

Link to JBrowse

Properties
Property NameValue
DescriptionPorphobilinogen deaminase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1071461..1074563 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0033014tetrapyrrole biosynthetic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0004418hydroxymethylbilane synthase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR036803Porphobilinogen_deaminase_C_sf
IPR022417Porphobilin_deaminase_N
IPR022418Porphobilinogen_deaminase_C
IPR000860HemC
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: EWM30321.1 (porphobilinogen deaminase [Nannochloropsis gaditana])

HSP 1 Score: 637.9 bits (1644), Expect = 1.900e-179
Identity = 319/363 (87.88%), Postives = 341/363 (93.94%), Query Frame = 0 
Query:    1 MSFFRQSAGALLLLPFIAGAFVVPGIAPRRNSMVRM--NAGSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFICNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIPAPATPKPA 362
            M   R+  G   LLP +AGAF +PG++P+RN+ +RM   AG  KPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLG EVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFICNKAKSI+ELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDD  SLKYLAALNHPETKVC+DCERSFLAELDGNCKTPIAGQA+VI+ KLHFKGLV+MPDGT+M+ET++VG LADAVKIG+EAG++LKE+AGPEFFKALYAA+PAP TPKPA
Sbjct:    1 MPCIRKIVGIFALLPIMAGAFFLPGVSPQRNTALRMAAEAGGAKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGDEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFICNKAKSIAELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDATSLKYLAALNHPETKVCVDCERSFLAELDGNCKTPIAGQARVIEDKLHFKGLVAMPDGTQMFETEKVGALADAVKIGREAGEDLKEQAGPEFFKALYAALPAP-TPKPA 362
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: GAX18013.1 (hydroxymethylbilane synthase [Fistulifera solaris])

HSP 1 Score: 477.6 bits (1228), Expect = 3.400e-131
Identity = 237/343 (69.10%), Postives = 276/343 (80.47%), Query Frame = 0 
Query:   13 LLPFIAGAFVVPGIAPRRNSMVRMNAGSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFI--CNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIP 354
            LL     AF     + R +S + M     +P+RIGTRGSPLALAQAYET++RL E FPEL  EG +EI ++KT GDMILDK+L E+GGKGLFTKELD ALLG EVDICVHSMKDVPTWLP+GTVLPCNLPRED+ D FI      K I +LP  SVIG+ASLRRQAQI+A+NP +K VNFRGNVQTRLRKL +G+VDAT+LA+AGL RMNM  C TS+LDWDEMLPAVAQGAIGIQCR DDE SLKY+AALNH ETK C+DCER+FL  LDGNCKTPIAGQAK+IDGK+HF+GL++MPDG+  YET   GE+ADA +IG +AGQELKERAG +FF+ +    P
Sbjct:    8 LLASSVAAFAPSTPSARTDSALFM----AEPLRIGTRGSPLALAQAYETRKRLQEHFPELREEGAIEICVLKTQGDMILDKSLMELGGKGLFTKELDTALLGNEVDICVHSMKDVPTWLPEGTVLPCNLPREDTNDAFIHKDGSVKRIEDLPDHSVIGTASLRRQAQIMAKNPTLKCVNFRGNVQTRLRKLDDGIVDATLLAIAGLKRMNMDGCATSVLDWDEMLPAVAQGAIGIQCRDDDERSLKYIAALNHAETKACVDCERAFLEALDGNCKTPIAGQAKIIDGKIHFRGLIAMPDGSLKYETSAEGEVADAKQIGLKAGQELKERAGAKFFEMMVEMSP 346
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: EJK45103.1 (hypothetical protein THAOC_36301 [Thalassiosira oceanica])

HSP 1 Score: 473.4 bits (1217), Expect = 6.400e-130
Identity = 235/346 (67.92%), Postives = 281/346 (81.21%), Query Frame = 0 
Query:   12 LLLPFIAGAFVVPGIAPRRNSMVRMNA--GSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFIC--NKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIP 354
            LL    A AF    ++  R+S     A  G VKP+RIGTRGSPLALAQAYET+RRL E FPEL  +G +EI ++KT GDMILDK+L E+GGKGLFTKELD ALLG EVDICVHSMKDVPTWLPDGTVLPCNLPRED+ D FI    + K+I++LP  SVIG+ASLRRQAQ+LA+NP  K VNFRGNVQTRLRKL +GVVDAT+LA+AGL RM MQDC T++LDW+EMLPAVAQGAIGIQCRSDDE SLKY+ ALN  +T VC++CER FL  LDGNCKTPIAGQA++IDGK+ F+GL++MPDG++ YET+  G + DAV+IG++AG+ELKERAG +FF+ +    P
Sbjct:    7 LLFVGSASAFAPAQVSQGRSSSALFMAEDGEVKPLRIGTRGSPLALAQAYETRRRLIENFPELEEDGAIEICVMKTQGDMILDKSLMELGGKGLFTKELDTALLGDEVDICVHSMKDVPTWLPDGTVLPCNLPREDTNDAFITANGEIKTIADLPDNSVIGTASLRRQAQLLAQNPTFKCVNFRGNVQTRLRKLDDGVVDATLLAIAGLKRMEMQDCATAVLDWEEMLPAVAQGAIGIQCRSDDERSLKYIDALNCMDTHVCVNCERGFLEALDGNCKTPIAGQARIIDGKIVFRGLIAMPDGSEKYETEATGAIEDAVEIGRKAGEELKERAGDKFFQMMVEMSP 352
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: GAX17574.1 (hydroxymethylbilane synthase [Fistulifera solaris])

HSP 1 Score: 472.6 bits (1215), Expect = 1.100e-129
Identity = 235/343 (68.51%), Postives = 275/343 (80.17%), Query Frame = 0 
Query:   13 LLPFIAGAFVVPGIAPRRNSMVRMNAGSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFI--CNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIP 354
            LL     AF     + R +S + M     +P+RIGTRGSPLALAQAYET++RL E FPEL  EG +EI ++KT GDMILDK+L E+GGKGLFTKELD ALLG EVDICVHSMKDVPTWLP+GTVLPCNLPRED+ D FI      K I +LP  SVIG+ASLRRQAQI+A+NP +K VNFRGNVQTRLRKL +G+VDAT+LA+AGL RMNM  C TS+LDWDEMLPAVAQGAIGIQCR +DE SLKY+AALNH ETK C+DCER+FL  LDGNCKTPIAGQAK+IDGK+ F+GL++MPDG+  YET   GE+ADA +IG +AGQELKERAG +FF+ +    P
Sbjct:    8 LLASSVAAFAPSTPSARTDSALFM----AEPLRIGTRGSPLALAQAYETRKRLQEHFPELREEGAIEICVLKTQGDMILDKSLMELGGKGLFTKELDTALLGNEVDICVHSMKDVPTWLPEGTVLPCNLPREDTNDAFIHKDGSVKRIEDLPDHSVIGTASLRRQAQIMAKNPTLKCVNFRGNVQTRLRKLDDGIVDATLLAIAGLKRMNMDGCATSVLDWDEMLPAVAQGAIGIQCRDNDERSLKYIAALNHAETKACVDCERAFLEALDGNCKTPIAGQAKIIDGKIQFRGLIAMPDGSLKYETSAEGEVADAKQIGLKAGQELKERAGAKFFEMMVEMSP 346
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: XP_002179459.1 (hydroxymethylbilane synthase [Phaeodactylum tricornutum CCAP 1055/1] >EEC49282.1 hydroxymethylbilane synthase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 470.7 bits (1210), Expect = 4.100e-129
Identity = 223/315 (70.79%), Postives = 266/315 (84.44%), Query Frame = 0 
Query:   36 MNAGSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFIC--NKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKAL 349
            M  G ++P+RIGTRGSPLALAQAYET++RL E FP+L  EG +EI ++KT GDMILDK+L E+GGKGLFTKELD ALL  EVDICVHSMKDVPTWLPDGTVLPCNLPRED+ D FI   +  K I ++P GSVIG+ASLRRQAQ++A+NP +K VNFRGNVQTRLRKL +GVVDAT+LA+AGL RM+M  C TSIL+WDEMLPAVAQGAIGIQCR DDE SLKYLAALNHPETK C+DCER FL  LDGNCKTPIAGQA+++DGK+ F+GL++MPDG+K +E +  G + +A KIG+EAG+ LK+ AG EFF+ +
Sbjct:    1 MAEGDIQPLRIGTRGSPLALAQAYETRKRLIENFPDLEAEGAIEICVLKTQGDMILDKSLMELGGKGLFTKELDTALLSDEVDICVHSMKDVPTWLPDGTVLPCNLPREDTNDAFIYKDDSVKRIEDIPDGSVIGTASLRRQAQLMAKNPTLKCVNFRGNVQTRLRKLDDGVVDATLLAIAGLKRMDMDGCATSILEWDEMLPAVAQGAIGIQCRDDDERSLKYLAALNHPETKACVDCERGFLEALDGNCKTPIAGQARIVDGKIMFRGLIAMPDGSKKFECESEGAIEEAAKIGREAGEGLKKEAGEEFFQRM 315
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: XP_002292986.1 (porphobilinogen deaminase [Thalassiosira pseudonana CCMP1335] >EED89447.1 porphobilinogen deaminase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 466.5 bits (1199), Expect = 7.800e-128
Identity = 226/317 (71.29%), Postives = 269/317 (84.86%), Query Frame = 0 
Query:   39 GSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFIC--NKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIP 354
            G+V P+RIGTRGSPLALAQAYET+RRL E FPEL  EG +EI ++KT GDMILDK+L E+GGKGLFTKELD ALLG EVDICVHSMKDVPTWLP+GTVLPCNLPRED+ D FI      K I++LP  SVIG+ASLRRQAQILA+NP +K VNFRGNVQTRLRKL +GVVDAT+LA+AGL RM+M DC T+IL+WDEMLPAVAQGAIGIQCRSDD  SLKY+ ALN  +T VC++CER+FL  LDGNCKTPIAGQA+++DGK+ FKGL++MPDG+  YET+  GE+ADAV+IG++AG+ELK +AG +FF+ +    P
Sbjct:    5 GAVTPLRIGTRGSPLALAQAYETRRRLIENFPELEAEGAIEICVMKTQGDMILDKSLMELGGKGLFTKELDTALLGDEVDICVHSMKDVPTWLPEGTVLPCNLPREDTNDAFITANGDIKRIADLPDNSVIGTASLRRQAQILAQNPTLKCVNFRGNVQTRLRKLDDGVVDATLLAIAGLKRMDMDDCATAILEWDEMLPAVAQGAIGIQCRSDDTRSLKYIDALNCMDTHVCVNCERAFLEALDGNCKTPIAGQARIVDGKIVFKGLIAMPDGSLKYETEATGEIADAVEIGRKAGEELKAQAGEKFFEMMVEMSP 321
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: OEU23734.1 (porphobilinogen deaminase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 454.1 bits (1167), Expect = 4.000e-124
Identity = 217/318 (68.24%), Postives = 268/318 (84.28%), Query Frame = 0 
Query:   38 AGSVKPVRIGTRGSPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFIC--NKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIP 354
            +G V P+RIGTRGSPLA+AQA+ET+RRL E F E+  EG +EI ++KT GDMILDK+L E+GGKGLFTKELDVALL  EVDICVHSMKDVPTWLP+GTVLPCNLPRED+ D FI   N  K+I++LP GSVIG+ASLRRQ+Q++A+NP +K VNFRGNVQTRLRKL++GVVDAT+LA+AGL RM+M    T++L+WDEMLPAVAQGAIGIQCR+DDE +LKY+ ALNH +T VC++CER+FL  LDGNCKTPIAGQAK+IDGK+ F+GL++MPDG++ +  +  GE+ADAVKIG EAG++LK  AG +FF  +    P
Sbjct:   41 SGEVVPLRIGTRGSPLAMAQAFETRRRLQETFEEMNEEGAIEICVMKTQGDMILDKSLMELGGKGLFTKELDVALLANEVDICVHSMKDVPTWLPEGTVLPCNLPREDTNDAFITKDNLIKTIADLPDGSVIGTASLRRQSQLMAQNPTLKCVNFRGNVQTRLRKLNDGVVDATLLAIAGLKRMDMDKHATAVLEWDEMLPAVAQGAIGIQCRTDDERALKYINALNHMDTHVCVNCERAFLEALDGNCKTPIAGQAKIIDGKIKFRGLIAMPDGSEKFTCESEGEIADAVKIGHEAGEKLKAEAGDKFFAMMVEMSP 358
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: ABD51930.1 (chloroplast hydroxymethylbilane synthase, partial [Guillardia theta])

HSP 1 Score: 444.9 bits (1143), Expect = 2.400e-121
Identity = 221/325 (68.00%), Postives = 266/325 (81.85%), Query Frame = 0 
Query:   44 VRIGTRGSPLALAQAYETKRRLGEAFP-ELAPEG-MVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFICNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKAL--YAAIPAPATPKPASVS 365
            +++GTRGSPLALAQAYET+RRL E FP EL  +G  V I II T+GDM L KALSEIGGKGLFTKELDVALL +EVD CVHSMKDVPT+LPDGT L   LPRED+RD FI  K +S  E+P G+VIGSASLRRQAQI A+NP +K VNFRGNVQTRLRKL + VVDAT+LA+AGL RMNM DCVT +LDWDEMLPAVAQGAIGIQ RSDD+ +LKY++ALNH +TK C+DCERSFLA LDG+CKTPIAGQA++IDGK+HF+GLV+ PDG+K++  +RVG+++D +KIGK+AG+E+++ AG +FF  L  Y      A  KP   +
Sbjct:   19 IKLGTRGSPLALAQAYETRRRLAELFPEELGEKGEKVSINIINTSGDMELSKALSEIGGKGLFTKELDVALLKKEVDFCVHSMKDVPTYLPDGTHLEAMLPREDTRDAFISPKYQSFEEMPEGTVIGSASLRRQAQIFAKNPKIKCVNFRGNVQTRLRKLDDEVVDATLLALAGLKRMNMADCVTKVLDWDEMLPAVAQGAIGIQVRSDDDKTLKYISALNHKDTKTCVDCERSFLATLDGSCKTPIAGQARIIDGKIHFRGLVASPDGSKIFRAERVGDVSDYMKIGKDAGEEIRKEAGEQFFADLLEYVQDIQAANTKPTKAA 343
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: XP_005834478.1 (hypothetical protein GUITHDRAFT_162740 [Guillardia theta CCMP2712] >EKX47498.1 hypothetical protein GUITHDRAFT_162740 [Guillardia theta CCMP2712])

HSP 1 Score: 444.9 bits (1143), Expect = 2.400e-121
Identity = 221/325 (68.00%), Postives = 266/325 (81.85%), Query Frame = 0 
Query:   44 VRIGTRGSPLALAQAYETKRRLGEAFP-ELAPEG-MVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFICNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKAL--YAAIPAPATPKPASVS 365
            +++GTRGSPLALAQAYET+RRL E FP EL  +G  V I II T+GDM L KALSEIGGKGLFTKELDVALL +EVD CVHSMKDVPT+LPDGT L   LPRED+RD FI  K +S  E+P G+VIGSASLRRQAQI A+NP +K VNFRGNVQTRLRKL + VVDAT+LA+AGL RMNM DCVT +LDWDEMLPAVAQGAIGIQ RSDD+ +LKY++ALNH +TK C+DCERSFLA LDG+CKTPIAGQA++IDGK+HF+GLV+ PDG+K++  +RVG+++D +KIGK+AG+E+++ AG +FF  L  Y      A  KP   +
Sbjct:   50 IKLGTRGSPLALAQAYETRRRLAELFPEELGEKGEKVSINIINTSGDMELSKALSEIGGKGLFTKELDVALLKKEVDFCVHSMKDVPTYLPDGTHLEAMLPREDTRDAFISPKYQSFEEMPEGTVIGSASLRRQAQIFAKNPKIKCVNFRGNVQTRLRKLDDEVVDATLLALAGLKRMNMADCVTKVLDWDEMLPAVAQGAIGIQVRSDDDKTLKYISALNHKDTKTCVDCERSFLATLDGSCKTPIAGQARIIDGKIHFRGLVASPDGSKIFRAERVGDVSDYMKIGKDAGEEIRKEAGEQFFADLLEYVQDIQAANTKPTKAA 374
[Close]
BLAST of NO02G03920 vs. NCBI_GenBank
Match: KOO21739.1 (porphobilinogen deaminase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 441.4 bits (1134), Expect = 2.700e-120
Identity = 221/320 (69.06%), Postives = 261/320 (81.56%), Query Frame = 0 
Query:   44 VRIGTRGSPLALAQAYETKRRLGEAFP-ELAPEGMVEIKIIKTTGDMILDKALSEIGGKGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVFICNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRKLSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSDDELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLHFKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYAAIPAPATPKPAS 363
            V++GTRGSPLALAQAYET+RRL EAFP EL  EG +EI +IKTTGDM+LDKAL EIGGKGLFTKELDV+LL   VDICVHSMKDVPTWL DGTVLPCNLPRED+RD FI  +  S+  L  G+VIG+ASLRRQAQ+LA NP    VNFRGNVQTRL+KLSEG+VDAT+LA AGLNRMN+ + +T +LDWD MLPAVAQGAIGIQCR +D+  L+YLAALNH +TKVC+DCER+FLA LDGNC+TPIAGQAK+++GKL F+GL++ PDGT +Y+T   G  ADAV IG+EAG+ELK + G +   AL     A   P+P S
Sbjct:   45 VKVGTRGSPLALAQAYETQRRLKEAFPDELGHEGAIEICVIKTTGDMVLDKALKEIGGKGLFTKELDVSLLNGAVDICVHSMKDVPTWLVDGTVLPCNLPREDTRDAFISREGGSLKSLKNGAVIGTASLRRQAQLLAMNPTFTCVNFRGNVQTRLKKLSEGIVDATLLAKAGLNRMNLAEHITEVLDWDMMLPAVAQGAIGIQCRENDQKMLRYLAALNHQDTKVCVDCERAFLAALDGNCRTPIAGQAKLVNGKLEFRGLIAKPDGTVLYKTTASGAPADAVAIGEEAGKELKVKCGND---ALAFFGDAEVKPEPKS 361
The following BLAST results are available for this feature:
BLAST of NO02G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30321.11.900e-17987.88porphobilinogen deaminase [Nannochloropsis gaditan... [more]
GAX18013.13.400e-13169.10hydroxymethylbilane synthase [Fistulifera solaris][more]
EJK45103.16.400e-13067.92hypothetical protein THAOC_36301 [Thalassiosira oc... [more]
GAX17574.11.100e-12968.51hydroxymethylbilane synthase [Fistulifera solaris][more]
XP_002179459.14.100e-12970.79hydroxymethylbilane synthase [Phaeodactylum tricor... [more]
XP_002292986.17.800e-12871.29porphobilinogen deaminase [Thalassiosira pseudonan... [more]
OEU23734.14.000e-12468.24porphobilinogen deaminase [Fragilariopsis cylindru... [more]
ABD51930.12.400e-12168.00chloroplast hydroxymethylbilane synthase, partial ... [more]
XP_005834478.12.400e-12168.00hypothetical protein GUITHDRAFT_162740 [Guillardia... [more]
KOO21739.12.700e-12069.06porphobilinogen deaminase [Chrysochromulina sp. CC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007052NSK007052Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03920.1NO02G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574904gene_986Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g83gene387Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03920.1NO02G03920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03920 ID=NO02G03920|Name=NO02G03920|organism=Nannochloropsis oceanica|type=gene|length=3103bp
TGGATAGGCAGGGGGGGCGTGTGAGAGCTTAATGTGAGCGCAAGCCTTTT
GTGGGACCAAGACAACTATATCCCTTTTCCCTTATTGCCGTATGAATGCA
GGCTTCTGCCTACATCATGCACTCGAGCTGGCTTTTCCTGCATCTTCCCC
TGTAGCCAGGCCAACCAAGCACCTTTCCTCCGGCCTTTTTGCCTCCCTTG
TCCAAACTTACACGTGACGGGTGGAAGACAAGCCTAGCACCAGCAGGGCT
GTTGCTGCTGCTGTTGCTGCTGCTGCTACTGAGGGGATCCTCATCTTGCC
TCGCCTTGTGCTGCTGCTGCGAATGAAGGGCGGCACTGCTTGTTTGCACT
TTATGTCTAAATTGAGAGTCGAGTTGATTGAATCAGGGCGTTTCCGATAA
ATTATGCAAAAGGCACATTTACAATGCCTTTGGATGGGCCACGGGACGTT
CCACTTGATGTTCGGAGGCAACCTTTGTGGGTGGTGGATGGCGATGGGAC
AGAGAGGCAAATGTGAAGAGCCGCTTGCTTGTGGGCCGCGGCTTGCTCCC
TTGATCCTCGTCGAGTGGGTAGCACGATTGAGTCAACAACCACACCGCAA
CCAATGCACAAAAGATATATGTACACCTGAGGTTTTTCTATTCATCCCAT
CCAGGCCACGTACAGCTTGGTGTGCGACTCCTTTCCTTTTCTTACCCTTC
CCATTCTTTTGCTCCTGCCTCTAGCAGCAGGACGGCGAGTTGCTTGAGTT
GCACATCTTGGTCAAGGCGTTCGCACAAATTTGGGCATTTCTAATGCATT
CCAGGCAGATTCTGACACTAGTAACCACGCAATCGATGTAGGCAGAGGGT
TGATATGTCGTGCTGCTGCCCACTGCGCTTGTGGTGGATTGTATCAGCCA
CTGCAAAACCTCAAGATATCAATGCAGTAGCATCGATCTCTTATTCTGTT
TCTCACTCGCCCACCCTCCCTCTCTCCCTTCCACCATCCCGTACAGGCAC
ATCTCCTCCGCCCCTTCCACAGCAGCATGTCTTTCTTCAGACAATCGGCT
GGCGCCCTGCTTCTGCTGCCCTTTATTGCCGGTGCTTTTGTCGTGCCAGg
taagagcaggaaggatcataggttggggaggcgaaggcatggggctggga
ggagagagggaatgaaaaatagataagctttccctaggctcctataaagc
aactgttaagatctatgctatcgtttctgtgtgatagtgtcctgtgtgga
caccacttcaggtgacgtgaaaggtatcaaagatgaggcggcacgatcct
ttcttttgttccatctcaagccgtgcacgacatctcaccacctccctcct
gcttccttccttctttccatgatcatagGCATTGCACCTCGTCGTAACAG
CATGGTGCGCATGAACGCAGGAAGCGTGAAGCCGGTACGGATCGGGACGC
GAGGGTCACCCTTGGCTTTGGCGCAGGCCTACGAGACCAAACGAAGACTA
GGTGAAGCCTTCCCCGAGCTAGCTCCGGAGGGGATGGTCGAGATCAAAAT
CATCAAGACTACGGGAGACATGATTCTGGATAAGGCCTTGTCGGAGATTG
GGGGCAAGGGTCTATTTACCAAGGAGCTGGACGTCGCATTGCTGGGGCAA
GAAGTTGATATTTGTGTGCATTCTATGAAGGACGTCCCTACCTGGCTTCC
GGACGGCACCGTGCTTCCCTGCAACTTACCTCGGGAGGATTCCCGGGATG
TGTTCATTTGTAATAAGGCGAAGTCAATTTCGGAACTACCGGCGGGGTCA
GTGATTGGCTCGGCGTCTTTGAGGCGACAAGCGCAGATCTTGGCGCGGAA
TCCTAATGTGAAGGTGGTGAACTTCCGGGGCAATGTCCAAACGCGGCTTA
GGAAGCTGAGCGAAGGAGTAGTGGATGCCACGATGTTGGCGGTGGCGGGG
TTGAACAGGATGAACATGCAAGATTGCGTTACCTCGATCTTGGACTGGGA
TGAGATGTTGCCCGCGGTGGCGCAGGGGGCGATCGGCATCCAATGTCGGT
CGGATGATGAACTTTCTTTGAAGTACTTGGCTGCCTTAAACCACCCGGAG
ACAAAAGTTTGCATTGATTGCGAGCGGTCGTTTTTGGCGGAGCTGGACGG
GAATTGTAAGACCCCGATTGCGGGCCAAGCGAAGGTGATTGATGGGAAGC
TGCATTTTAAGGGCCTGGTCTCCATGCCGGACGGCACCAAGATGTACGAA
ACGGATCGTGTGGGTGAGCTGGCTGATGCAGTGAAGATCGGTAAAGAAGC
GGGACAGGAGCTGAAAGAGAGGGCAGGGCCGGAGTTTTTTAAGGCCTTAT
ATGCTGCGATCCCTGCGCCGGCGACGCCCAAGCCAGCTAGTGTGTCCTAA
TAAAAAGGGGTCGAGAATGAGATCAGGAAACGGCAGGGAGGGGTCAGAGA
TAGGAAGGTAGAGAGGCTAAAAGGGAAAATAAGAGGTCAAGGAGAACGAG
GATGACATGAGAAAGAAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGA
ATTGGAGGATAAAAGACATACGAATACCAATGAGATCTCGTGCGAGAGTG
CAACCGCGAGAACAGCAACAAGAATAACAACATGAAGCACAAAACAAATC
CACCGACACAATTTGCAGCGTCGCCTCGCCTCGCGCACAAGAAGCGGACG
AGTGGAGACGAAAAGGAAGCAACCCGACGCAAGAGAACCAACGAAAACTA
TACATACATACAAAACAGAGGTCAAGGCGAAGCCGTATATTTTCGTGAAA
TGTCCCTGTATCTTTCACCTTTTCCTTTATATATATATTACTTGACTCAC
TGTGCATCTTCTCTTGTCATATCACTTATTTTTGTCCAGATCGGTAAACA
TTTAGCAAATATCACCACCGAACACGTATTAATTTAAGGTGGGAAGAAGA
AACAAGACTGAAAATGCTTGAAAGGGACACAAGTGATGAGAAACTGCGCA
GTCAGCTAGGGGGTTAAAAATAGAATAGGACAAGAAGATAATTAAAGGAA
AACAAGAGGGTTGGATATATAGGGGAAAACAGATGTGCGACCGATTAAAA
TGA
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protein sequence of NO02G03920.1

>NO02G03920.1-protein ID=NO02G03920.1-protein|Name=NO02G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MSFFRQSAGALLLLPFIAGAFVVPGIAPRRNSMVRMNAGSVKPVRIGTRG
SPLALAQAYETKRRLGEAFPELAPEGMVEIKIIKTTGDMILDKALSEIGG
KGLFTKELDVALLGQEVDICVHSMKDVPTWLPDGTVLPCNLPREDSRDVF
ICNKAKSISELPAGSVIGSASLRRQAQILARNPNVKVVNFRGNVQTRLRK
LSEGVVDATMLAVAGLNRMNMQDCVTSILDWDEMLPAVAQGAIGIQCRSD
DELSLKYLAALNHPETKVCIDCERSFLAELDGNCKTPIAGQAKVIDGKLH
FKGLVSMPDGTKMYETDRVGELADAVKIGKEAGQELKERAGPEFFKALYA
AIPAPATPKPASVS*
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Synonyms
Publications