NO02G03860, NO02G03860 (gene) Nannochloropsis oceanica

Overview
NameNO02G03860
Unique NameNO02G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length648
Alignment locationchr2:1052028..1052675 +

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Properties
Property NameValue
DescriptionCS-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1052028..1052675 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR037898NudC_fam
IPR007052CS_dom
Homology
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: EWM30280.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 279.6 bits (714), Expect = 8.000e-72
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 0 
Query:   57 ITPKGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKY 215
            ITPKGKEG RLKFE+ G+T+YEWEQTLEDVS+++TPP  VKASML CTI  SHLTLGLK A HPFIDE T GSVKA ESFWTLEDGELH+LLQKA KGEVWPSALAGRG+LDP+TSE+VRKQLMLERFQEENPGFDFSNA FNGAVPDP+TFLGGVKY
Sbjct:   57 ITPKGKEG-RLKFEYDGRTIYEWEQTLEDVSIFVTPPSGVKASMLRCTIASSHLTLGLKEAGHPFIDEATGGSVKAAESFWTLEDGELHVLLQKAKKGEVWPSALAGRGSLDPVTSESVRKQLMLERFQEENPGFDFSNAEFNGAVPDPETFLGGVKY 213
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: XP_009032783.1 (hypothetical protein AURANDRAFT_18373 [Aureococcus anophagefferens] >EGB13190.1 hypothetical protein AURANDRAFT_18373 [Aureococcus anophagefferens])

HSP 1 Score: 208.8 bits (530), Expect = 1.700e-50
Identity = 93/159 (58.49%), Postives = 119/159 (74.84%), Query Frame = 0 
Query:   57 ITPKGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            +TPKG E  R +F+H G+ +YEW+Q+LEDV++YITPPP V   M+ CTI+P+HL LGL+G P PF+DE T G V   ES W + DGEL +L  K  KGE W  ALA RG +DP T + +++++MLERFQEENPGFDF +A FNG VPDP+ F+GGVKYT
Sbjct:   13 LTPKGSEKGRYQFKHEGRVIYEWDQSLEDVNIYITPPPGVVPDMIDCTISPNHLRLGLRGNP-PFLDEATGGPVVVKESHWYMNDGELTVLFAKMRKGETWDGALATRGKVDPFTRQEIQREMMLERFQEENPGFDFRSAEFNGQVPDPRAFMGGVKYT 170
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: CBN76699.1 (nuclear movement domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 203.4 bits (516), Expect = 7.300e-49
Identity = 97/157 (61.78%), Postives = 120/157 (76.43%), Query Frame = 0 
Query:   60 KGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGA-LDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            KGKEG R+KFEH G+TVYEWEQ+LE+V+LYI  PP VKA  + C ITP H+ LGLKG P PFIDE T G V   ES+W ++ GEL++ LQK  K + WP+AL GR   +DP+T E ++K++MLERFQ ENPGFDFS A FNG VPD ++F+GGVKYT
Sbjct:   92 KGKEG-RIKFEHEGRTVYEWEQSLEEVNLYIETPPGVKADRIECKITPRHICLGLKGNP-PFIDEDTGGPVVVEESYWMMDGGELNVNLQKMKKADTWPAALQGRNTQVDPMTLEGMQKKIMLERFQSENPGFDFSGAEFNGQVPDARSFMGGVKYT 246
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: XP_009517177.1 (hypothetical protein PHYSODRAFT_472297 [Phytophthora sojae] >EGZ29902.1 hypothetical protein PHYSODRAFT_472297 [Phytophthora sojae])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 85/152 (55.92%), Postives = 110/152 (72.37%), Query Frame = 0 
Query:   64 GHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            G R  F+H G+ +YEWEQ++E+V+++I PPP V A  + C I  +H+TLGL+G    F++   A SV   ES+W L+ GEL+I LQK  KG +WPS   G G LDP+  E  ++Q+MLERFQEENPGFDFSNA FNGA PDP+TF+GGVKYT
Sbjct:    5 GQRRVFKHDGRVIYEWEQSMEEVNVFIKPPPGVTAQQIQCDIAANHVTLGLRGVTDKFLNHDLASSVVVAESYWMLDSGELNINLQKMKKGFIWPSVFVGHGELDPMQQEATKQQMMLERFQEENPGFDFSNAEFNGAAPDPRTFMGGVKYT 156
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: XP_008897277.1 (hypothetical protein PPTG_05479 [Phytophthora parasitica INRA-310] >ETI34036.1 hypothetical protein F443_19392 [Phytophthora parasitica P1569] >ETK74395.1 hypothetical protein L915_18814 [Phytophthora parasitica] >ETL27825.1 hypothetical protein L916_18710 [Phytophthora parasitica] >ETL81073.1 hypothetical protein L917_18536 [Phytophthora parasitica] >ETM34266.1 hypothetical protein L914_18628 [Phytophthora parasitica] >ETN17751.1 hypothetical protein PPTG_05479 [Phytophthora parasitica INRA-310] >ETP03924.1 hypothetical protein F441_19213 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 0 
Query:   66 RLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            R  F+H G+ +YEWEQ++E+V+++I PPP V A  + C IT +H+TLGL+GA   F++   A SV   ES+W  + GEL+I LQK  KG +WPS   G G LDP+  E  ++Q+MLERFQEENPGFDFSNA FNGA PDP+TF+GGVKYT
Sbjct:    7 RRVFKHDGRVIYEWEQSMEEVNIFIKPPPGVTAQQIQCDITTNHVTLGLRGATDKFLNHDLASSVVVAESYWMFDSGELNINLQKMKKGFIWPSVFVGHGELDPMQQEATKQQMMLERFQEENPGFDFSNAEFNGAAPDPRTFMGGVKYT 156
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: ETO62840.1 (hypothetical protein F444_19340 [Phytophthora parasitica P1976] >ETP32078.1 hypothetical protein F442_19163 [Phytophthora parasitica P10297])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 0 
Query:   66 RLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            R  F+H G+ +YEWEQ++E+V+++I PPP V A  + C IT +H+TLGL+GA   F++   A SV   ES+W  + GEL+I LQK  KG +WPS   G G LDP+  E  ++Q+MLERFQEENPGFDFSNA FNGA PDP+TF+GGVKYT
Sbjct:    7 RRVFKHDGRVIYEWEQSMEEVNIFIKPPPGVTAQQIQCDITTNHVTLGLRGATDKFLNHDLASSVVVAESYWMFDSGELNINLQKMKKGFIWPSVFVGHGELDPMQQEATKQQMMLERFQEENPGFDFSNAEFNGAAPDPRTFMGGVKYT 156
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: KUF79206.1 (tubulin polyglutamylase TTLL9 [Phytophthora nicotianae])

HSP 1 Score: 196.1 bits (497), Expect = 1.200e-46
Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 0 
Query:   66 RLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            R  F+H G+ +YEWEQ++E+V+++I PPP V A  + C IT +H+TLGL+GA   F++   A SV   ES+W  + GEL+I LQK  KG +WPS   G G LDP+  E  ++Q+MLERFQEENPGFDFSNA FNGA PDP+TF+GGVKYT
Sbjct:    7 RRVFKHDGRVIYEWEQSMEEVNIFIKPPPGVTAQQIQCDITTNHVTLGLRGATDKFLNHDLASSVVVAESYWMFDSGELNINLQKMKKGFIWPSVFVGHGELDPMQQEATKQQMMLERFQEENPGFDFSNAEFNGAAPDPRTFMGGVKYT 156
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: XP_002907621.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY64185.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 194.1 bits (492), Expect = 4.400e-46
Identity = 83/147 (56.46%), Postives = 109/147 (74.15%), Query Frame = 0 
Query:   69 FEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            F+H G+ +YEWEQ++E+V+++I PPP V A  + C I  +H+TLGL+GA   F++   A SV   ES+W L+ GEL+I LQK  KG +WPS   G G LDP+  E  ++Q+MLERFQEENPGFDFSNA FNG+ PDP+TF+GGVKYT
Sbjct:   10 FKHDGRAIYEWEQSMEEVNIFIKPPPGVTAQQIQCDIATNHVTLGLRGAADKFLNHDLASSVVVAESYWMLDSGELNINLQKMKKGFIWPSVFVGHGELDPMQQEATKQQMMLERFQEENPGFDFSNAEFNGSAPDPRTFMGGVKYT 156
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: XP_008876767.1 (hypothetical protein H310_11781 [Aphanomyces invadans] >ETV94452.1 hypothetical protein H310_11781 [Aphanomyces invadans])

HSP 1 Score: 193.7 bits (491), Expect = 5.800e-46
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 0 
Query:   66 RLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            R  F H GQ +YEWEQ+LE+V+L+I PPP + A+ L CTITP+ LTLGLKG+   F+D   +  V A ES+W L+ GEL+I LQK  KG  W     G G LDPLT   V+K+LMLERFQ+ENPGFDFSNA FNGA PD +TF+GGVKYT
Sbjct:   10 RRSFTHQGQLIYEWEQSLEEVNLFIRPPPGITAAHLNCTITPTRLTLGLKGSADRFLDHEFSSQVVADESYWMLDGGELNINLQKMKKGLTWDCVFVGHGELDPLTKGEVQKKLMLERFQQENPGFDFSNAEFNGAAPDARTFMGGVKYT 159
[Close]
BLAST of NO02G03860 vs. NCBI_GenBank
Match: OWZ20600.1 (hypothetical protein PHMEG_0004956 [Phytophthora megakarya])

HSP 1 Score: 193.0 bits (489), Expect = 9.800e-46
Identity = 84/150 (56.00%), Postives = 109/150 (72.67%), Query Frame = 0 
Query:   66 RLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASMLYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQKASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNGAVPDPQTFLGGVKYT 216
            R  F+H G+ +YEWEQ++E+V+++I PPP V A  L C I+ +H+TLGL+G    F++     SV   ES+W L+ GEL+I LQK  KG +WPS   G G LDP+  E  ++Q+MLERFQEENPGFDFSNA FNGA PDP+TF+GGVKYT
Sbjct:    7 RRVFKHDGRVIYEWEQSMEEVNVFIKPPPNVTAQHLQCNISTNHVTLGLRGVADKFLNHDLTSSVVVAESYWMLDSGELNINLQKMKKGFIWPSVFIGHGELDPMQQEATKQQMMLERFQEENPGFDFSNAEFNGAAPDPRTFMGGVKYT 156
The following BLAST results are available for this feature:
BLAST of NO02G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30280.18.000e-7284.18CS-like domain protein [Nannochloropsis gaditana][more]
XP_009032783.11.700e-5058.49hypothetical protein AURANDRAFT_18373 [Aureococcus... [more]
CBN76699.17.300e-4961.78nuclear movement domain-containing protein [Ectoca... [more]
XP_009517177.11.200e-4655.92hypothetical protein PHYSODRAFT_472297 [Phytophtho... [more]
XP_008897277.11.200e-4656.67hypothetical protein PPTG_05479 [Phytophthora para... [more]
ETO62840.11.200e-4656.67hypothetical protein F444_19340 [Phytophthora para... [more]
KUF79206.11.200e-4656.67tubulin polyglutamylase TTLL9 [Phytophthora nicoti... [more]
XP_002907621.14.400e-4656.46conserved hypothetical protein [Phytophthora infes... [more]
XP_008876767.15.800e-4660.00hypothetical protein H310_11781 [Aphanomyces invad... [more]
OWZ20600.19.800e-4656.00hypothetical protein PHMEG_0004956 [Phytophthora m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007046NSK007046Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03860.1NO02G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574880gene_980Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g90gene380Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03860.1NO02G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03860 ID=NO02G03860|Name=NO02G03860|organism=Nannochloropsis oceanica|type=gene|length=648bp
ATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACGACGAGGA
CAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACCTCCTCAT
CCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAACACCACC
ACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGCACCGGCT
CAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAAACGCTGG
AAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGCCAGCATG
CTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGAAAGGGGC
ACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAGGCGACTG
AAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCTACAGAAA
GCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGGGCGCGTT
GGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTGGAGAGAT
TTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTTCAATGGA
GCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACACGTAG
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protein sequence of NO02G03860.1

>NO02G03860.1-protein ID=NO02G03860.1-protein|Name=NO02G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MVDYSRFDKIGMDDDEDKEDTPCQQQSKGSTSSSQPPHPLPPASASTNTT
TTSSTFITPKGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASM
LYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQK
ASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNG
AVPDPQTFLGGVKYT*
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Synonyms
Publications