NO02G03840, NO02G03840 (gene) Nannochloropsis oceanica

Overview
NameNO02G03840
Unique NameNO02G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1820
Alignment locationchr2:1045807..1047626 +

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Properties
Property NameValue
DescriptionProtein mpv17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1045807..1047626 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
[Close]
BLAST of NO02G03840 vs. NCBI_GenBank
Match: EWM30205.1 (protein mpv17 [Nannochloropsis gaditana])

HSP 1 Score: 266.5 bits (680), Expect = 7.500e-68
Identity = 128/180 (71.11%), Postives = 157/180 (87.22%), Query Frame = 0 
Query:    1 MAFMHVKRYPMLFKAVLPGTLAIACGDMLCQRLEGKIEICLERTTRMAITGALIVTPSAYYLGSKIERIIPKANTTFTTIAKAGLNATCSVFFIIGSFCGNNLLQGRGFEVLRAQLSERLLPTAASGVAYWTGANLLLFSGVVPQSVAATAAFSVLWNVRMSSALNMKTPASETALAKEE 181
            MA  +++R+PML  AVLPGTLAIACGD+LCQ+LEGK EIC ERT RMA+TGA++VTP ++YLGSKI+R++PK +T   T+AK+GLNA CSV FIIGSFCGNNLLQGRG +VLRAQL ERLLPT A+G+AYW+GANLLLFSG+VPQ+V AT  FS++WNV+MSSALN KTP +E ALA+E+
Sbjct:    1 MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREK 180
[Close]
BLAST of NO02G03840 vs. NCBI_GenBank
Match: XP_021290002.1 (PXMP2/4 family protein 4-like [Herrania umbratica])

HSP 1 Score: 63.9 bits (154), Expect = 7.400e-7
Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 0 
Query:    6 VKRYPMLFKAVLPGTLAIACGDMLCQRLE--GKIEICLERTTRMAITGALIVTPSAYYLGSKIERIIPKAN--TTFTTIAKAGL---NATCSVFFIIGSFCGNNLLQGRGFEVLRAQLSERLLPTAASGVAYWTGANLLLFSGV-VPQSVAATAAFSVLWNVRMSSALNMKTPASETA 176
            VK +P+L K+V    + +A  D+  Q +         L RT+RMA  G LI+ PS ++  + + ++ PK +  TTF  +A   L    A   VFF +     N  LQG     + A+L   L+PT  +GV YW   + + F  + VP     + +FS LW V M+   ++  PA+ T+
Sbjct:   89 VKSWPVLTKSVTSSLIYVA-ADLSSQTISKPSSEPYDLVRTSRMAGYGMLILGPSLHFWFNLMSKLFPKRDLITTFKKMAMGQLLYGPAMTVVFFSL-----NARLQGERSGEIVARLQRDLVPTMLNGVMYWPFCDFITFRFIPVPLQPLVSNSFSYLWTVYMTYMASLAKPATITS 260
The following BLAST results are available for this feature:
BLAST of NO02G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30205.17.500e-6871.11protein mpv17 [Nannochloropsis gaditana][more]
XP_021290002.17.400e-731.46PXMP2/4 family protein 4-like [Herrania umbratica][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007042NSK007042Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03840.1NO02G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574867gene_977Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g93gene378Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03840.1NO02G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03840 ID=NO02G03840|Name=NO02G03840|organism=Nannochloropsis oceanica|type=gene|length=1820bp
CCGAGAGTCCCTTTCCCGCACTCTCCAAAGCAAGCCTGCAGTTTCCCTAC
CACCTTACGCACTTGCTAGGGTCCCTCAAACATGCAAGGACAATATCATA
TCACACTCTCACGTGTCCTTTAAGCAATGTTGATCAAGTCAACCGAACTC
AAGAAGGGGGCAACTAAATCCATCTTGCATTCAATAATGCGTCACAAACC
TCAAATCTAGGAAAAAGAGGCATGGAAACATGGAAACGTGGCATGCAGCA
GGTCGTGTGGAGCTCGCACGCTGACCTCTTTTCAGTTGCAAAGTTCGCTC
ACTTATTGTGCGGCACATGACTAGGCCCCGCTCGCTCGCTATATCGTTTT
CCTTGAGATGATGGTCCCTGTGATTGAAACCCATCAATGGCAGCCAAGAG
CGAGGCATGACATCACAGTTGTGACCACAACAACGAGAAGCTCAAGGACG
CATACGCATGTCTTTTCCCTGGCCCTTTCCCTTCTACACCCAACCGCCCA
CAGCAAAAACCATTCACGCCAGTCGTCAGCCACCATCGTTACCGCTGGCA
CTCGCGGCCAGCTTCATCAAGgtgagcttgtggcccagggcgccaaggga
gtgctggcgcccccttttcgtgctggtgggccctgagcccttaaggtctg
tgggttttgaaactgactctgccccatttcttttatcccatacacccagG
TCTTTGAACCGCCAGATCTGTCCTCGTTATCGTCGGCCGTGCCCTCAAGA
AAATAAATGGCGTTCATGCACGTAAAACGCTACCCCATGCTCTTCAAAGC
CGTCCTGCCTGGGACGCTTGCTATTGCCTGCGGCGACATGTTGTGTCAGC
GGCTGGAAGGGAAGATAGAGATTTGTCTAGAGCGGACAACACGAATGGCA
ATAACAGGAGCTTTGATCGTGACTCCATCAGCGTATTATTTGGGCTCCAA
GATTGAGCGCATCATTCCCAAAGgtaagcaggggatggggtgaagataag
agcggccgagtgatagtgctttttgtgtgcaccttcgtatttttaagaat
tgtaattggggtgcggtatattcatgatgtggatggctaggtatgcatat
gaaggttgatgccttttcgtgtgcttgcggatgacggtcctggtaaatgg
gagggaggagatgggggggacgttctctgccccatcagcccagtacgtcc
tagtctactttgttttccccacctccttttccaaagccaaaggatccaat
cactccaaagcatatttcgttaatcccgtacttaccccccttcctccttt
ccgctgttgaagCCAACACCACCTTCACCACCATCGCCAAAGCTGGGCTT
AATGCCACGTGCTCTGTCTTCTTCATCATCGGAAGCTTCTGTGGAAACAA
CCTGTTACAAGGTCGTGGATTCGAGGTACTGCGTGCACAACTCAGTGAGC
GCCTCTTGCCCACCGCAGCCTCAGGTGTCGCATATTGGACAGGCGCGAAT
CTCCTACTCTTTTCGGGGGTGGTCCCGCAATCCGTTGCTGCTACTGCTGC
ATTTTCCGTGTTATGGAATGTACGGATGAGCAGTGCATTGAACATGAAGA
CGCCTGCATCGGAGACGGCATTGGCGAAGGAGGAGCGGAATCGACGGGTG
AGTGCCATGCGGCTGGCAGTCGGGGGGTTGCAGAAGGAGAGTGGTGGTGG
GAGTGGCAGCAGCATAAGCAGTAGCACCAATAGAAGACGTGGTGGTGGCA
AGGCATGTGAGTCGCAAAATACCGAGTTGTTGCAGTAAGAGATCGGTCAA
TAGAAGACGTGGTGGTGGCA
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protein sequence of NO02G03840.1

>NO02G03840.1-protein ID=NO02G03840.1-protein|Name=NO02G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MAFMHVKRYPMLFKAVLPGTLAIACGDMLCQRLEGKIEICLERTTRMAIT
GALIVTPSAYYLGSKIERIIPKANTTFTTIAKAGLNATCSVFFIIGSFCG
NNLLQGRGFEVLRAQLSERLLPTAASGVAYWTGANLLLFSGVVPQSVAAT
AAFSVLWNVRMSSALNMKTPASETALAKEERNRRVSAMRLAVGGLQKESG
GGSGSSISSSTNRRRGGGKACESQNTELLQ*
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Synonyms
Publications