NO02G03760, NO02G03760 (gene) Nannochloropsis oceanica

Overview
NameNO02G03760
Unique NameNO02G03760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2230
Alignment locationchr2:1016176..1018405 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1016176..1018405 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G03760 vs. NCBI_GenBank
Match: EWM30227.1 (hypothetical protein Naga_100003g100 [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 2.500e-42
Identity = 168/290 (57.93%), Postives = 178/290 (61.38%), Query Frame = 0 
Query:   33 LHHPQSHLHHP---RRIPSSSSSTLGGLNTGSLSAIASANMSRTDSQDSLTALGGTMSADALGHLADFPRVTSLGDLAGLNMFTSSPFPSTDNLLSLHQQQHAQSAQIVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPRVDSATGLSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPDQDLLSKCVFPQ-----AIKAPVTQQSAVAFTGIGRSS 315
            LHH  SHLH P   RR P       GG +TG LS  A+ NM RTDSQDSL+ LG T+SADALGHL DFP  TSLGDLAGLNMFTSSPFPSTDNLLSL              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                               +PRVDSATGLSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPD+DLLSKCVFPQ     A +   +QQ+AVAFTGIG+ S
Sbjct:  589 LHH-ISHLHQPSGLRRGP-------GGSDTGILSVTAATNMPRTDSQDSLSVLGRTISADALGHLTDFPHTTSLGDLAGLNMFTSSPFPSTDNLLSL--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNTGDSAPRGPNVSGHGSQLPMSTTRGTVATVTQNPVITATARNAGGANTAGSVSSTTTTQKRIPRVDSATGLSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPDKDLLSKCVFPQNSAARAAQTAASQQAAVAFTGIGKPS 862
The following BLAST results are available for this feature:
BLAST of NO02G03760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30227.12.500e-4257.93hypothetical protein Naga_100003g100 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03760.1NO02G03760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03760.1NO02G03760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03760 ID=NO02G03760|Name=NO02G03760|organism=Nannochloropsis oceanica|type=gene|length=2230bp
ATGGGTGGAGGAACGGGAGCAGGGAGCAAGCAGCAGCAGCAGCAGAGCCA
GCAGCAGCAGCAGCCGCCTTTTTCGGATTTGCCCTGCGCACACCAGTTGC
ACCATCCTCAGTCACATCTCCATCATCCACGACGTATCCCCTCCTCATCG
TCGTCCACCCTAGGAGGGCTGAACACGGGTAGTCTCTCCGCGATCGCGTC
GGCGAATATGTCACGCACCGATTCTCAGGATAGCCTAACAGCGTTAGGTG
GCACAATGTCGGCAGACGCTCTTGGACATTTGGCGGACTTTCCGCGTGTG
ACCAGCCTAGGAGATCTTGCCGGACTCAACATGTTTACCTCCAGCCCTTT
CCCCTCCACGGACAATCTCCTCAGCCTTCACCAGCAGCAACACGCCCAAA
GTGCTCAAATTGTTCCGGCCACTGCTGCTTCTCTTGCCGCGCATAGCACC
ACCAGCTTAGCAGCAGCGGCAGCAGCAGCAGCAGTGGCTCCGTCGAGCAC
ACCGATCAGTCGTAGCACCAGTGGCAACGGTAATGGCGGGAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAATGCGAATGGTCTTCCACCACTAGCC
AATGCCAGCAGCACGGTGATAGTCGCTGGCGGCGGTCGGTTGGCGACAGG
AAAGAGCAACAACGGCAACATAACTAATAGTGGAGGGACGAGCAGTAGCA
CTACCGCAGCAGGAGGACGGCGTATGCCCCGCGTGGACTCGGCCACAGGC
TTATCCTCCTTACGGGTGATGAGCGGATTACCTCGGAATACATCCGTGGA
AGACTTTCTATCCTTGGTCGATTACGGTGACATCCCGGCGCCAGACCAAG
ACCTGCTCTCCAAGTGCGTCTTTCCTCAAGCCATCAAGGCGCCTGTGACC
CAGCAGTCTGCCGTGGCCTTTACCGGAATCGGAAGGAGTTCCGCGGTGCC
GGCTGGAGGAGGTGGTGGAGGAGTGGGGGGAGATTCGGATGATGTGGCTC
ATACAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGC
AGCAGCAGCAGCAACAGCGGCTTTGTTAACATCAGGGGTAAAGGGGACTG
GTGGGAAGAGGGGTCGGGCAGACTTGCCGTCGGCGGCAGTGGTGGGACAA
AAGCCGAAACAAGCCAAGGTGGATGGGTAAAGAAGAGAAAAGGGATACGA
ATATCCCTTTAAAATGATTGACAAGATTTTGAGAAGCTGGATGAGCTATA
TTAATGAACTTGTACACACGAAAGAAGAAGAACAAGGTAAAAGACGAAGG
GAAAGGAAGAGGCAGAAGAAGAAGGAGAAGACGAAGACGAAGAAGACGGC
AAAGGAGAAGAAGAAAATTAAGAAGAAGAGAACAAAAAAAGAAGGAAGAG
AAGAAGCGGGAGGAAAAGAAGAAGAAGGAAACGAGAGAAATAACGAGGAA
GAGTAGACAAAGAACACAGGAAGTGAAGGAAGAGAAAGAAAAAGAAGAAG
AAGTGGATGGAAACAGAGAATATGATGGGTGAATTTACACAAAGAGATGG
AGATCGGGGGTGAGGAGGGCATTTTTGATCTGTGTATTCAGAGAGTGTGG
CAGAGAGAGAAAGGGGAGGTGATTAGCCTTTCTATTTGCCCTTTCGCAGT
CAGAATTCGATTTTAATTAAGTATTGCGAGTCCCGAGAGACCTGTGGAGC
GTATGTTTTGTGTGGCCTCTGCATGTCTGCAGCGATGTATGTGTTTGGTT
CGTCTGTCCCATCGGTATGTGCGTGAGCCTGTTTGATTCCGTATTTTTTG
GGATGACCCTGTACAGGAGGATCAAAGTGAGGAAGGATAACAGATAATGG
AAGAAACAGAGAGAAGAGAGAAGAGAGAAAGAAAAGGGAAGCCCGCCAGT
GCAAAAACTGTGTATCTAGGCGCCGGGCGACTATTTTTGGAGGAAGAAAA
GAGCTGGAGCGGAAAGCCCTGAAAGCATCTGAGCAAACATTTCTCTTCAG
CCGATGTGTGCCGATCATCTCCCCTAATGGAGTACCATAGAAAGACCCGG
AGACAAAGAGAAGAGAAAGAAAAGCAAGTAGGGGCTGCGGATAATTCAGA
GAGGGAAACAAGAGACCCTGAATCCAAATAAGAAAAAGAATGAGAAAAGA
GGTGGGAAAAAGAAGAAAAGGTTCTTCCGT
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protein sequence of NO02G03760.1

>NO02G03760.1-protein ID=NO02G03760.1-protein|Name=NO02G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MGGGTGAGSKQQQQQSQQQQQPPFSDLPCAHQLHHPQSHLHHPRRIPSSS
SSTLGGLNTGSLSAIASANMSRTDSQDSLTALGGTMSADALGHLADFPRV
TSLGDLAGLNMFTSSPFPSTDNLLSLHQQQHAQSAQIVPATAASLAAHST
TSLAAAAAAAAVAPSSTPISRSTSGNGNGGSSSSSSSSSSSNANGLPPLA
NASSTVIVAGGGRLATGKSNNGNITNSGGTSSSTTAAGGRRMPRVDSATG
LSSLRVMSGLPRNTSVEDFLSLVDYGDIPAPDQDLLSKCVFPQAIKAPVT
QQSAVAFTGIGRSSAVPAGGGGGGVGGDSDDVAHTRGGGGGGGGGGGGGG
GGGGGGGGGGGGGGAAAAAAATAALLTSGVKGTGGKRGRADLPSAAVVGQ
KPKQAKVDG*
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Synonyms
Publications