NO02G03740, NO02G03740 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G03740 vs. NCBI_GenBank
Match: EWM30236.1 (pentatricopeptide repeat containing protein chloroplastic [Nannochloropsis gaditana]) HSP 1 Score: 367.9 bits (943), Expect = 1.200e-97 Identity = 530/1071 (49.49%), Postives = 618/1071 (57.70%), Query Frame = 0
Query: 16 LQWRGE-GTARAIARQQAPRPTTPPSNLALRECLAALAHAPDTATQRRALADIQQ-------CVSSAR-----KEEEKTNVYQYLGPLDLGLILRRAVTIGDWGIAEHVLAHGGDKISFPTAAMAEAALLCCCREGKPEVAQTILLKLLA----TNSAPQLSTSPFLSRSTSLSLYTVILRALGKSGHWKGCVELLRHPKLAPFLVIDEACVEAGITACGRQGCVEEAMGLYDDFRSQHQQRLAPFVSASCHNAAIRACARSGSLARAHDIIHDAQQDEVLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLFLLKILPALSKAGRWRESRDTLARMRRQGVKVQLEAHRLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRVDDGEEGREEDIERGKIQHGLLIGCFQGALMACQQASRGAEALALLQQQETEHKKGKSKMRLLASMTSETRTQSYALVLGACSKVGEWGLALDLLRRTPLPDEACXXXXXXXXXXXXXXXXXXXXXXXXEQRVERGEGLVLEARSYQLAMWACTQAGRAQEAVDLMEEMTEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRNNVLLLGRGQGRKSSGSRNQELLALTTVLQTLSRAGRWREVLALMVCESEREEEGEERGLGGGEALPYSGVSWTLVDVLLAEGRAQEAVLFVEGLAKEAGVAPGLPLVNRLLEGLAKGGEWALCQELLLGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKARFHTVPDVASFSVVMSAAAAGVAAGTNHASSAAQELTKLLPMMRTRHGLKPDVIAYNVTANLHRRSGDWEKVLVLLXXXXXXXXXXXXXXXSDLSSSREGLAPDVVTYSTAIAACGEAGKWEKVLELL 1070
+ WRGE T + AP +PPS LR+ L A A+QR+A +++ C + R K E+ N+Y+YL P D+GLIL RAV GDW IAEHVL +GG+ + E+ ++ CCR+GKPE+A IL KLLA + P +S S RS++ S Y V+LRALGKSG W+ CVELL+ P L P + EAC EAGI ACGRQ ++EA+ L + FR +H + + P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPAL AHRL L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G + + L+ GC +GALMACQQAS+ EAL+LL+Q+E + R+L M ET TQ YAL L AC+K GEW +LLRR XXXXXXXXXXXXXXXXXXXXXXXX +V + + +VL+A YQLAMW AGRA EAV LMEEM +R NVL+L R +S QELLA TTVLQT R G+W+EVL ++ CES + G G G E + GV T+V+VLL GR +EA+ F+EGLAK+ GV P LP++NRLL GL GEW+LC ELLLG + MKARFH PDVA F+VVM AAAAG+A +H A QEL +LLP+MR+R GL+PD+ AYNV ANLHRR+GD +VL +L + S G+APDVVTYSTA+AACGEAGKWEK L LL
Sbjct: 1 MHWRGEMKTGSWVKEVLAPHAASPPST-GLRQSFVVLVKARKAASQRQASESMRERANKLNACEGAIRAKATGKLEKGINIYKYLNPGDVGLILERAVKCGDWTIAEHVLKYGGENFE-SSLNETESVIMRCCRQGKPELASAILQKLLARVELADPPPSISLS---LRSSAASAYIVLLRALGKSGRWEACVELLKRPSL-PLALSSEACFEAGINACGRQQRIDEALDLLEHFR-RHCSQKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPALXXXXXXXXXXXXXXXXXXXXXXXXXXAHRLVLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELFAEIEVETPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREHMLAIDRRGNRPS-QSAAMDVELVSGCLKGALMACQQASQWTEALSLLKQEEERDQTS----RVLRDMNPETLTQCYALTLAACAKAGEWECTTELLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKVSKEKEMVLDAGMYQLAMWGXXNAGRADEAVALMEEMVACEGLVPTARTYVTYLKALQRQKNWQKSVRALMQGRRENVLVLKENSDRTAS----QELLAWTTVLQTCGRDGQWQEVLDIL-CESSKTTVG---GSVGSEVICRRGVPLTVVEVLLGTGRLREAIQFLEGLAKDVGVIPPLPVINRLLGGLGAAGEWSLCLELLLGVD----------------------------------------------------------------GAEDGPEGNSMKARFHVSPDVACFTVVMGAAAAGLANEGSHGDCAVQELAQLLPVMRSRFGLEPDLRAYNVAANLHRRAGDLAEVLKILEDMKQ-------------NKSSSGIAPDVVTYSTALAACGEAGKWEKALSLL 974
BLAST of NO02G03740 vs. NCBI_GenBank
Match: XP_005856233.1 (hypothetical protein NGA_2083900, partial [Nannochloropsis gaditana CCMP526] >EKU20130.1 hypothetical protein NGA_2083900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 273.1 bits (697), Expect = 4.100e-69 Identity = 460/879 (52.33%), Postives = 534/879 (60.75%), Query Frame = 0
Query: 1 MRIRCGALFSRQGSSLQWRGE-GTARAIARQQAPRPTTPPSNLALRECLAALAHAPDTATQRRALADIQQ-------CVSSAR-----KEEEKTNVYQYLGPLDLGLILRRAVTIGDWGIAEHVLAHGGDKISFPTAAMAEAALLCCCREGKPEVAQTILLKLLA----TNSAPQLSTSPFLSRSTSLSLYTVILRALGKSGHWKGCVELLRHPKLAPFLVIDEACVEAGITACGRQGCVEEAMGLYDDFRSQHQQRLAPFVSASCHNAAIRACARSGSLARAHDIIHDAQQDEVLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLFLLKILPALSKAGRWRESRDTLARMRRQGVKVQLEAHRLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRVDDGEEGREEDIERGKIQHGLLIGCFQGALMACQQASRGAEALALLQQQETEHKKGKSKMRLLASMTSETRTQSYALVLGACSKVGEWGLALDLLRRTPLPDEACXXXXXXXXXXXXXXXXXXXXXXXXEQRVERGEGLVLEARSYQLAMWACTQAGRAQEAVDLMEEMTEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRNNVLLLGRGQGRKSSGSRNQELLALTTVLQTLSRAGRWREVLALMVCESEREEEGEERGLGGGEALPYSGVSWTLVDVLLAEGRAQEAVLFVEGLAKEAGVAPGLPLVNRLLEGLAKGGEWALCQELLLG 863
MR R L + QG + WRGE T + AP +PPS LR+ L A A+QR+A +++ C + R K E+ N+Y+YL P D+GLIL RAV GDW IAEHVL +GG+ + E+ ++ CCR+GKPE+A IL KLLA + P +S S RS++ S Y V+LRALGKSG W+ CVELL+ P L P + EAC EAGI ACGRQ ++EA+ L + FR +H + + P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPAL AHRL L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G + + L+ GC +GALMACQQAS+ EAL+LL+Q+E + R+L M ET TQ YAL L AC+K GEW +LLRR XXXXXXXXXXXXXXXXXXXXXXXX +V + + +VL+A YQLAMW AGRA EAV LMEEM +R NVL+L R +S QELLA TTVLQT R G+W+EVL ++ CES + G G G E + GV T+V+VLL GR +EA+ F+EGLAK+ GV P LP++NRLL GL GEW+LC ELLLG
Sbjct: 6 MRGRFSPLLTSQGCIMHWRGEMKTGSWVKEVLAPHAASPPST-GLRQSFVVLVKARKAASQRQASESMRERANKLNACEGAIRAKATGKLEKGINIYKYLNPGDVGLILERAVKCGDWTIAEHVLKYGGENFE-SSLNETESVIMRCCRQGKPELASAILQKLLARVELADPPPSISLS---LRSSAASAYIVLLRALGKSGRWEACVELLKRPSL-PLALSSEACFEAGINACGRQQRIDEALDLLEHFR-RHCSQKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPALXXXXXXXXXXXXXXXXXXXXXXXXXXAHRLVLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELFAEIEVETPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREHMLAIDRRGNRPS-QSAAMDVELVSGCLKGALMACQQASQWTEALSLLKQEEERDQTS----RVLRDMNPETLTQCYALTLAACAKAGEWECTTELLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKVSKEKEMVLDAGMYQLAMWGXXNAGRADEAVALMEEMVACEGLVPTARTYVTYLKALQRQKNWQKSVRALMQGRRENVLVLKENSDRTAS----QELLAWTTVLQTCGRDGQWQEVLDIL-CESSKTTVG---GSVGSEVICRRGVPLTVVEVLLGTGRLREAIQFLEGLAKDVGVIPPLPVINRLLGGLGAAGEWSLCLELLLG 864
BLAST of NO02G03740 vs. NCBI_GenBank
Match: XP_005856232.1 (hypothetical protein NGA_2083100, partial [Nannochloropsis gaditana CCMP526] >EKU20129.1 hypothetical protein NGA_2083100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 127.5 bits (319), Expect = 2.800e-25 Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 0
Query: 947 PDVASFSVVMSAAAAGVAAGTNHASSAAQELTKLLPMMRTRHGLKPDVIAYNVTANLHRRSGDWEKVLVLLXXXXXXXXXXXXXXXSDLSSSREGLAPDVVTYSTAIAACGEAGKWEKVLELL 1070
PDVA F+VVM AAAAG+A +H A QEL +LLP+MR+R GL+PD+ AYNV ANLHRR+GD +VL +L + S G+APDVVTYSTA+AACGEAGKWEK L LL
Sbjct: 2 PDVACFTVVMGAAAAGLANEGSHGDCAVQELAQLLPVMRSRFGLEPDLRAYNVAANLHRRAGDLAEVLKILEDMKQ-------------NKSLSGIAPDVVTYSTALAACGEAGKWEKALSLL 111 The following BLAST results are available for this feature:
BLAST of NO02G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G03740 ID=NO02G03740|Name=NO02G03740|organism=Nannochloropsis oceanica|type=gene|length=3924bpback to top protein sequence of NO02G03740.1 >NO02G03740.1-protein ID=NO02G03740.1-protein|Name=NO02G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1193bpback to top Synonyms
Publications
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