NO02G03660, NO02G03660 (gene) Nannochloropsis oceanica

Overview
NameNO02G03660
Unique NameNO02G03660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3599
Alignment locationchr2:981666..985264 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:981666..985264 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G03660 vs. NCBI_GenBank
Match: EWM30269.1 (hypothetical protein Naga_100003g113 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 7.400e-15
Identity = 93/285 (32.63%), Postives = 127/285 (44.56%), Query Frame = 0 
Query:   21 PQHPIVEVVPPCPLMLIRRSGIASQPISMGDDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI-PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHKLSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVVTGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIEENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPAHAHG 305
            PQ  + +    CPL ++R S   SQ IS      +        +    +PS  +  A  + A   +  P + RT SDSCI P APRMSSSEPNPLFLE +P L+LPPPSV +G    +  ++Y   +    LSSS+RERMG+LA     F + S   +VG    VG   ++ +        T  L   EG   K+    +S S   LS+L NK  + + A   G     ++  G               S  LPAMQ        HT  +  +A      A A G
Sbjct:   18 PQQQVPDKRLSCPLTILRLSQTVSQTISARYIWESKGGYCR-DKRKTSSPSCAVNVAHVSPAPVEVTRPAITRTFSDSCITPSAPRMSSSEPNPLFLESLPHLTLPPPSVDDGDARSIGGDRYNDRRA---LSSSMRERMGTLAGGFKLFASPSSSLTVG----VGAAGLQAESTQGSQAHTSFL---EGLTEKSP---TSRSSMVLSILANKTGAGSVAKKDGLCAPSVQHTGH--------------SAPLPAMQGRTLVEVAHTTIKGPVAEANIGDAFAKG 274
The following BLAST results are available for this feature:
BLAST of NO02G03660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30269.17.400e-1532.63hypothetical protein Naga_100003g113 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007023NSK007023Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03660.1NO02G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574792gene_955Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g113gene363Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03660.1NO02G03660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03660 ID=NO02G03660|Name=NO02G03660|organism=Nannochloropsis oceanica|type=gene|length=3599bp
GGAGAAGGAGGAGGAATGGAGGGGGGGAGATGGGATTTCACGTGCCGGCC
ATCCGAGAAAACCTGTAAACACTCCATATCTCGAGATGGCAATGGGGCAC
GCAACATCCTGCGGGTGTATGAGAGTGAGGTCCGTGGAGAAGATCGTCCA
CATGAGCTCCGGTATGACCAACCGCGGCAGGTGGTGCAGACGCTGTATAA
GTTGTCTCCCCTCTGACCTCCTCTTTTTTTCCCCTCCTCCTAGCCCTGTA
TGGGCCATCGGAGGACTCATGCTGGTGCAAAACCTGTTAAAGCCATTTAA
AACTCGGCAAAATAAGGGGAGAATAAAATTTTGTTGGTAATAAGGCTTTC
CGTCGAGTGTTATCCTAAGAGGAGGCATTCGTCTGTGAGGCTTTGTGTTT
GCATTTGTCTGCAGATAGTTTGCACGCGATAATTTGGATTGTAGGAAACT
ACGGAAACTACACTACACTGTGATCTTGATCTTGCCTTGCATTTTGTCCC
GCACTGCAAACGAACACACTCTTGTCGCACTCACACCCGCGCACAGAAAG
ACAATGACCAGACATGTATTCTATTTGGAGTGCGAATCGTACCCTTCCGT
AATCTCGCCGGGCGCAAGTAGAGCAAACGTTCATTATCGCTCCGAGTCCG
GCCTCCAAGTCGTGCAGTTGTTTCTCTTATTTGCTTCTAACCACGGCTCC
CCACCCCCAACCCACCTCCCACTCGCCAACACCAACACAGCGCCCCAGGC
ACTCTTTCATCTTTTAGCCAGCGAGCAGCCATGGCGTTTTGCATCCTTTC
CACGAGCATCATCAAGAACACCAGCAGCGTACACATGTGCCGGCGGCACC
AGAAAATCTATTCGTGACACCGGCTCTGCACATAGACAGTAGAAGCAGCA
GTAGCAAGCCAGTGTACAGCAACAGTGTTTTCCTGTTCGTGATAAAGCGC
TGACAGCTTTAAGCAAGAAACATAATCTCTATTCAAATCAAGCAGCGCAG
CACAACCAACCATCATCAACCGAGCCTTATATTCTGTCGGAGGTGACATT
ATCAGCACCAGCAAACCAGCAGCAACAACCTTCAGCGCTTCACAGAGCTC
TTACACGCAATATATCTTACGGCGCTGTCATCACTGTTGCTCCATTGAGC
AACCTTCCTCCGAAAAGTAATGAAACACGCGCATTCGCCTGTCGTCCCCT
CTCTTGACCTGCTCGAGGAGCTACCGGCGCCACAACATCCAATTGTTGAA
GTGGTTCCACCCTGTCCTTTGATGCTCATCCGGCGGTCCGGGATTGCCTC
TCAGCCGATTAGCATGGGTGACGACAACAACAATGATAACAACATCATCA
GCCTGGGGGAGATGGGCCATGACACGCCCTCGACAACCATGATCACGGCA
GCAGCAACAGCAGCAGTGGCGGGCCTTGGCTATCCTAAAGTCCTGCGAAC
CATGTCGGATTCATGTATTCCTCGCGCCCCCCGCATGTCTTCTTCAGAGC
CCAACCCTCTCTTCTTGGAAAGGATCCCCCAACTTTCTTTGCCCCCTCCT
TCGGTGAAGAACGGCGGACACCTTGTCATGAACACTGAGAAGTATGCCGG
AGAAAAAGGAGGGCACAAATTGTCCTCATCCCTTAGGGAGCGTATGGGGT
CGCTGGCAACTAGTTTAATGCATTTTACGGCGACTTCATGCCCTAGCTCT
GTGGGCGATACCGCTCCAGTTGGTGAGTGGCAAGTCGAATACGATGAAGA
GACACGGCCCACGGTGGTGACCGGTCTCCTGGGCGAACGGGAGGGAGGCG
CTGCCAAGGCCAAGGTGGAAGTATCGTCGGCATCCTTGACGGCGCTTTCT
CTGTTGATTAACAAGGCCTTTTCTAAAGCAGAAGCAGGAGGAGCAGGGGC
TGGAACAGCAGGCATTGAGGAGAATGGTCGAAATGGTGTATTGACCGGCG
TCCGTTTGGATGGCCCATCGCTGTCGACCTCCTTGCCTGCTATGCAACTC
CCGCCGCCTGCTCTGGCTGTCCATACCATAGCAAGGTCGGATATGGCGAC
GACGAGGCACATTCCTGCCCACGCACACGGAGGGAGGAAAGATGGAGACA
CCCCTTTCTCGTTTTCGGCTTTCACTAACTCGACGGCCGCGACGACGGCA
TCTTCTGTCTCTTCTGCTAGTGACGGGCTGGGGGGAGATGAGGACGTCAC
CAGCGCTGTGTCCCCTGCCGCCTCTGCCTTGTCGTCCTCGTCCTCGTCCC
AGGCCTCGTATGGGGAGGTGGAGGAAGAGGAGGAAGCTGTGGGCTCGCCG
TCGGCAGATGCGACGATGGGGCCCTTCATGCTGGAGGAGCTCAACCTTAA
TCACTAGGCCAGCACCAGAGGAGGAAATGTGAGGATTATAATGATAGCTG
AGAGTGATGTCTGTCGAGACGAGTCTGCCATAATTGGGATGAGAGGCTCC
ACCATCCCCCCTACCTTGTCATCGTCCCCGCTCTTTTTGCGAAGGGAGAA
ATAAAGGCGAGTGGGACGGAGAAGTGGAGGGCGAATATGTAGAGAGCTAG
GGACAAGGAAAGTGTATGTGGCTGCTGCTGTTGTGGCTGTAGCTTTGGGT
GGGTGAGGGTGTGGGTTTAATGTGGGTGTCAGCCTGTGTACCATGCAGAG
AGAGCAGGAACAATGGCGATGATGAAATGACAGGGAGAGAGGGAGGAGAA
GAGAGATGAGGGTAGAGCAAGCTTTTGTATTTCTCTTCCACCTTTTTGAT
TTTATGGGTTCAAGGGAAGGAAGAGAATGAGAAGATGCGGCCGCCGCCCT
GTCTGTCAAGCAACAGCATAAGAGATGCCTCAATCCTCACGTGAAGATGC
GGTGCCATCCATACCATCATTACCTCTGCTACCATCAGTTAGTATTTGGT
ATAGCAAAAATACACCATGACTGATAAGAAGGGAGATAGAGAAAGGTCGA
GAGATCAGCAAAAGGGACGGTGGCAGCAACAGAGTGGTCCTGCAAGCAAA
CAAATAAGTAACCCCAAATGTGTTTAAAATGTTTTACATTTAATAGTCGA
TTAAGCTGTCACCAGCTGCAATAGTGACAGCACCAGGAGGGGCAGTGAAT
ACCGCCGTCTCAAGAAGCAGCAGCATACAGTGGAGCAGCAGGTCTATGAA
AAGACAATGTCGGAGCATTTTTCCACATATACTAACCTTGTTTGATCGTC
TAAATGTTCTAATATTTCACTCTTAGGATGGGAAGAAGTGCGCACGCAAG
TCAAGGAAAAGGACTAGGGGTAAATAGTTGTATTAGCGGGAATGTAGGGG
CGTGTGTTTGTGTTTTTGTGTGTTCTCGGTGGACGTTTTACCGTGCATTA
TCCTCTGGTTGAGAGCCGGAGCAAGACTTATCACAAGCGAGCACCCACCA
ATACGTATAGAACGACAAAGGAGGGTGTAAAGCTAATGCAATTCTCTTAT
TGAGAAAAATAGTGCACTAAATTGTGTCCATTGCCTAAACCACAACAATA
TTGAACCAACACAACTAGAAGCCAAGTTGTCGAGAAGAAAAGATACAAGA
GAAAAGGGAAATAGACAGATGAAGAAACAAAGTTATTGACGAGAAAACA
back to top

protein sequence of NO02G03660.1

>NO02G03660.1-protein ID=NO02G03660.1-protein|Name=NO02G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MKHAHSPVVPSLDLLEELPAPQHPIVEVVPPCPLMLIRRSGIASQPISMG
DDNNNDNNIISLGEMGHDTPSTTMITAAATAAVAGLGYPKVLRTMSDSCI
PRAPRMSSSEPNPLFLERIPQLSLPPPSVKNGGHLVMNTEKYAGEKGGHK
LSSSLRERMGSLATSLMHFTATSCPSSVGDTAPVGEWQVEYDEETRPTVV
TGLLGEREGGAAKAKVEVSSASLTALSLLINKAFSKAEAGGAGAGTAGIE
ENGRNGVLTGVRLDGPSLSTSLPAMQLPPPALAVHTIARSDMATTRHIPA
HAHGGRKDGDTPFSFSAFTNSTAATTASSVSSASDGLGGDEDVTSAVSPA
ASALSSSSSSQASYGEVEEEEEAVGSPSADATMGPFMLEELNLNH*
back to top
Synonyms
Publications