NO02G03600, NO02G03600 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G03600
Unique Name	NO02G03600
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1521
Alignment location	chr2:963175..964695 +

Link to JBrowse

Properties


Property Name	Value
Description	Glutamine synthetase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:963175..964695 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0004356	glutamate-ammonia ligase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006807	nitrogen compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR014746	Gln_synth/guanido_kin_cat_dom
IPR008146	Gln_synth_cat_dom

Homology

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: EWM30243.1 (glutamine synthetase [Nannochloropsis gaditana])

HSP 1 Score: 617.1 bits (1590), Expect = 4.900e-173
Identity = 300/492 (60.98%), Postives = 372/492 (75.61%), Query Frame = 0

Query:   19 DIRYIDLLWCSLAGLRCLRVVPVFV----AAVDGPDDRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSADCQITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            + ++I+ LWCSLAGLRCLRVVPV        VD   D D +  L WLP P P+ SL R  ++LP H D PS  SGV  +GD+ L ++DP  +L  LPWRP H+M  V MLDPIS  PWSLCPRSCLARI++KA+  HG++FRVGFELEF L + D +  +  TYSSA  FD  + +LD+LC TL  +G++VEQ+HKES PGQFE+VLGH P M AVDGLL AREA+ AVA RHQRRV  LPK++ E+AGNGCHVH+SLW+NG+N+L   G T    S   LD VL  Y +  G   L+ET RQFLGGL ALLPALMCFTTPTPNSFRR+QP AWAGAFQGWGI NKEVPLRLP+Q+L++G+FTN+EVKLCD+TANP+IA+AA++SAGLVG++LAA  S+ D   ++   LP PL+VD G+L+  E+TRR I++LP+ W+ AKA LMSPE   LRELLG DMV+ACVA RESEWAAL G+ L++E+ LL+D+Y
Sbjct:    4 ETKHINFLWCSLAGLRCLRVVPVHTMYDKKRVDQYADIDENGYLKWLPKPMPSVSLSRACISLPAHEDTPSPDSGVPFVGDICLQLEDPMSNLMCLPWRPKHFMGAVRMLDPISHAPWSLCPRSCLARILEKAQARHGISFRVGFELEFALATIDGKFDDRHTYSSARGFDVESSLLDDLCDTLYSMGIVVEQLHKESAPGQFELVLGHLPAMEAVDGLLLAREAVAAVAYRHQRRVTLLPKFLPEYAGNGCHVHLSLWKNGINILSLSGATIRPGS---LDGVLDMYTTLSGFSSLNETFRQFLGGLVALLPALMCFTTPTPNSFRRLQPGAWAGAFQGWGIANKEVPLRLPVQTLEDGLFTNVEVKLCDSTANPHIALAAILSAGLVGVDLAATLSEADF-AESFAALPAPLDVDPGQLTYAERTRRKIKELPREWSTAKACLMSPEGKGLRELLGEDMVRACVAIRESEWAALGGIRLEEEIDLLFDRY 491

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: WP_070394105.1 (glutamine synthetase [Moorea producens] >AOX01669.1 glutamine synthetase [Moorea producens PAL-8-15-08-1])

HSP 1 Score: 267.7 bits (683), Expect = 7.400e-68
Identity = 174/491 (35.44%), Postives = 258/491 (52.55%), Query Frame = 0

Query:   20 IRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYWLPDPCP-TASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSADCQ---ITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            IR++ +LWC  A +   + V            R T      LPD       +      LP   D+P  GSG+  +G++RL V D +  L SLP+ P H     +M++  +  PW  CPR+ L R+V +AE E GL     FE EF L     +     +   ++S  A D    ++D++ + L E G+ VEQ + E GPGQ EI + +   + A D  +  RE + A+A +H    +FLPK + + AGNGCH+H+SLWR+G NLL  P                      EG   L +   QF+ G+   LPALM  TTP+ NS+RRI+P  W+GAF+ WGI N+E  +R+P  + D G  +N E+K  DA++NPY+A+ A+I+AGL G             I+N + L   + VD G L+  E++ RGI  LP    EA  +L + +   L + LG ++ QA +A R++EW A+K   L++EV LL ++Y
Sbjct:   14 IRFVRILWCDNANIIRGKAV-----------HRKT------LPDYLKHGVGISAAQQALPVMYDVPVPGSGLGPIGEIRL-VPDWE-TLTSLPYAPGHARVFGDMVN--NGSPWPYCPRNFLKRMVAEAESE-GLQVVAAFENEFYLLQPTPEGILPVDNTVFASTLAMDQHQQVIDQIAEALVEQGMPVEQYYPECGPGQQEISILYTQALPAADQQIAFRETVKAIAFQHHLVASFLPKILADQAGNGCHLHLSLWRDGKNLLLNP----------------------EGDGGLSQVACQFIAGILQHLPALMALTTPSTNSYRRIRPHCWSGAFRCWGIDNREAAVRVP-SNPDGGSPSNFELKTVDASSNPYLALGAVIAAGLDG-------------IRNSLELGEAVAVDPGHLTELERSERGIELLPTTLGEAIGNLSADQL--LLDALGVELAQAYLAVRKAEWEAMKDFELEEEVELLLERY 444

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: WP_009148843.1 (glutamine synthetase [Moorea producens] >EGJ30859.1 glutamine synthetase [Moorea producens 3L] >OLT66811.1 glutamine synthetase [Moorea producens PAL])

HSP 1 Score: 267.3 bits (682), Expect = 9.600e-68
Identity = 171/493 (34.69%), Postives = 255/493 (51.72%), Query Frame = 0

Query:   20 IRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYW--LPDPCP-TASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSADCQ---ITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            IR++ ++WC  A +                        ++W  LPD       +      LP   D+P  GSG+  +G++RL V D +  L  LP+ P H     +M++  +  PW  CPR+ L R+V +AE E GL     FE EF L     +     +   ++S  A D    ++D + + L E G+ VEQ + E GPGQ EI + +   + A D  +  RE + A+A +H    +FLPK + + AGNGCH+HISLWR+G NLL  P                      EG   L +   QF+ G+   LPALM  TTP+ NS+RRI+P  W+GAF+ WGI N+E  +R+P     E   TN E+K  DA++NPY+A+ A+I+AGL G             I+N + L   + VD G L+  E+++RGI  LP N  EA  +L + +   L + LG ++ QA +A +++EW A+K   L++EV LL ++Y
Sbjct:   14 IRFVRIIWCDNANI-------------------IRGKAVHWKTLPDYLKHGVGISAAQQALPVMYDVPVPGSGLGPIGEIRL-VPDWE-TLTPLPYAPGHARVFGDMVN--NGSPWPYCPRNFLKRMVAEAESE-GLQVVAAFENEFYLLQPTPEGILPVDNTVFASTLAMDQHQEVIDHIAEALVEQGMPVEQYYPECGPGQQEISILYTQALPAADQQIAFRETVKAIAFQHHLVASFLPKILADQAGNGCHLHISLWRDGKNLLLNP----------------------EGDGGLSQVACQFIAGMLQHLPALMALTTPSTNSYRRIRPHCWSGAFRCWGIDNREAAVRVPSNPDGESP-TNFELKTVDASSNPYLALGAVIAAGLDG-------------IRNSLELGEAVAVDPGHLTELERSQRGIELLPTNLGEAIGNLSADQV--LLDALGVELAQAYIAVKKAEWEAMKDFELEEEVELLLERY 444

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: WP_075901696.1 (glutamine synthetase [Moorea bouillonii] >OLT60976.1 glutamine synthetase [Moorea bouillonii PNG])

HSP 1 Score: 267.3 bits (682), Expect = 9.600e-68
Identity = 174/491 (35.44%), Postives = 258/491 (52.55%), Query Frame = 0

Query:   20 IRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYWLPDPCP-TASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSADCQ---ITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            IR++ +LWC  A +   + V            R T      LPD       +      LP   D+P  GSG+  +G++RL V D +  L SLP+ P H     +M++  +  PW  CPR+ L R+V +AE E GL     FE EF L     +     +   ++S  A D    ++D + + L E G+ VEQ + ESGPGQ EI + +   + A D  +  RE + A+A +H    +FLPK + + AGNGCH+H+SLWR+G NLL  P                      EG   L +   QF+ G+   LPALM  TTP+ NS+RRI+P  W+GAF+ WGI N+E  +R+P  + D G  +N E+K  DA++NPY+A+ A+I+AGL G             I+N + L   + VD G L+  E++ RGI  LP    EA  +L + +   L + LG ++ QA +A R++EW A+K   L++EV +L ++Y
Sbjct:   14 IRFVRILWCDNANIIRGKAV-----------HRKT------LPDYLKHGVGISAAQQALPVMYDVPVPGSGLGPIGEIRL-VPDWE-TLTSLPYAPGHARVFGDMVN--NGSPWPCCPRNFLKRMVAEAESE-GLQVVAAFENEFYLLQPTPEGILPVDNTVFASTLAMDQHQQVIDHIAEALVEQGMPVEQYYPESGPGQQEISILYTQALPAADQQIAFRETVKAIAFQHHLVASFLPKILADQAGNGCHLHLSLWRDGKNLLLNP----------------------EGDGGLSQVACQFIAGILQHLPALMALTTPSTNSYRRIRPHCWSGAFRCWGIDNREAAVRVP-SNPDGGSPSNFELKTVDASSNPYLALGAVIAAGLDG-------------IRNSLELGEAVVVDPGHLTELERSERGIELLPTTLGEAIGNLSADQL--LLDALGVELAQAYLAVRKAEWEAMKDFELEEEVEVLLERY 444

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: PSC71706.1 (flug [Micractinium conductrix])

HSP 1 Score: 264.6 bits (675), Expect = 6.200e-67
Identity = 185/523 (35.37%), Postives = 253/523 (48.37%), Query Frame = 0

Query:   18 PDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVL-------------------------GSADCQITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLW-RNGMNLL--PPPGLTETTPSLTNLDDVLKTYCSAEGMLL--LDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRL-PIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPE--ATRLRELLGT-DMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            P ++Y+ L+WC  +G R  RV+P              S   +WLP           A    C  D P+       +G++RL V D      +LPW P H  A V M       PW  CPR+ L R++  A+ +HGLTF++GFELEF L                                 +  TY S+ A D AAP+L E+  TL+ L + VEQ H ESGPGQFE+       + A D LLF+RE + AVA +H    +FLPK +   AG+G H+H S+W   G NLL   PP      P           +  +E   +  L +    F+ G+   LPAL+ FTTP+PNS+RR+QP+ WAGA+Q +GI N+E  LRL     L +    N E+K  DATANP+I VAA I AGL+G             I+  + LP P+  D G ++   +   GI +LP    EA A   + E     L   LG+  + +A +ATR SEW     M L+ E + LY +Y
Sbjct:   10 PSVQYVRLMWCDASGQRRCRVIPRKRLEAAAARGVGLSFACFWLP-----------AWGDSCITDDPAG----MPVGEMRL-VPDVTATR-TLPWMPSHATALVTMCREPPDEPWGCCPRTALKRVLAHAKQQHGLTFQLGFELEFYLLRKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXIDQGTYCSSTALDAAAPVLAEIVSTLASLDVGVEQFHAESGPGQFEVATAPAEALAAADALLFSREGVAAVAAKHGLVASFLPKLLPGAAGSGQHLHFSIWDEQGSNLLFHEPP-----RPRAF-------VFAGSEEPAVPGLSQAGEAFMAGVLRRLPALVAFTTPSPNSYRRMQPQCWAGAYQCYGINNREAALRLCCTPGLPDS--ANCELKAFDATANPHIGVAATIVAGLMG-------------IKEGLRLPQPVTSDPGAMTGAVREGLGIARLPATLGEAIAAYEADEDFQAALASTLGSRTLPRAFIATRRSEWQHFGEMPLEAEAAKLYARY 488

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: WP_071105397.1 (glutamine synthetase [Moorea producens] >AOY82107.1 glutamine synthetase [Moorea producens JHB])

HSP 1 Score: 263.8 bits (673), Expect = 1.100e-66
Identity = 172/493 (34.89%), Postives = 253/493 (51.32%), Query Frame = 0

Query:   20 IRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYW--LPDPCPTASLCRVAL-TLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSADCQ---ITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            IR++ ++WC  A +                        ++W  LPD          AL   P   D P  GSG+  +G++RL V D +  L  LP+ P H     +M++     PW  CPR+ L R+V +AE E GL     +E EF L     +     +   Y+S  A D    ++D + + L E G+ VEQ + E GPGQ EI + +   + A D  +  RE + A+A +H    +FLPK + + AGNGCH+HISLWR+G NLL  P                      EG   L +   QF+ G+   LPALM  TTP+ NS+RRI+P  W+GAF+ WGI N+E  +R+P  + D G  +N E+K  DA++NPY+A+ A+I+AGL G             I+N + L   + VD G L+  E++ RGI  LP    EA  +L + +   L + LG ++ QA +A R++EW A+K   L++EV LL ++Y
Sbjct:   14 IRFVRIIWCGNANI-------------------IRGKAVHWKTLPDYLKHGVGISAALQAFPVMYDAPVPGSGLGPIGEIRL-VPDWE-TLTPLPYAPGHARVFGDMIN--HGSPWPYCPRNFLKRMVAEAESE-GLQVVAAYENEFYLLQPTPEGILPVDNSVYASTLAMDQHQQVIDHIAEALVEQGMPVEQYYPECGPGQQEISILYTQALPAADQQIAFRETVKAIAFQHHLVASFLPKVLADQAGNGCHLHISLWRDGKNLLLNP----------------------EGDGGLSQVACQFIAGILQHLPALMALTTPSTNSYRRIRPHCWSGAFRCWGIDNREAAVRVP-SNPDGGSPSNFELKTVDASSNPYLALGAVIAAGLDG-------------IRNSLELGEAVAVDPGHLTELERSERGIELLPTTLGEAIGNLSADQI--LLDALGVELAQAYLAVRKAEWEAMKDFELEEEVELLLERY 444

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BLAST of NO02G03600 vs. NCBI_GenBank
Match: WP_035998120.1 (glutamine synthetase [[Leptolyngbya] sp. JSC-1])

HSP 1 Score: 263.1 bits (671), Expect = 1.800e-66
Identity = 170/498 (34.14%), Postives = 252/498 (50.60%), Query Frame = 0

Query:   12 RARVGLPDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFV---LGSADCQITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            R+ +   +IR++ +LWC  A      V+      +D   +  T  +            +      +P   D  + GSG+  +G+  L V D    L  LP+ P H     +++      PWS CPRSCL R++ +A  E+ L  +  FE EF    L     Q  +   ++S    D    +++++   L + G+ VE+ + ESGPGQ EI + +   + A D  +  RE +  VA RHQ R +FLPK   + AGNGCH+H+SLWRNG NLLP                      +A G   L    R F+ G+   LPALM  TTP+PNS+RR+QP  W+GAF+ WGI N+E  LR+P         T++E+K  DA+ANPY+A++A+I+AGL G             I++ +    P+ +D G L   E+ +R I +LP N  EA  HL       L      ++ QA +A R++EW A++GMTLD EV LL ++Y
Sbjct:    4 RSALEAENIRFVRVLWCDNA-----NVIRAKAFHLDFLAEHQTQGV-----------GISIAQQAIPVMYDAVAAGSGLGPVGEAWL-VPD-WATLNPLPYAPGHARVLGDIVK--DGQPWSFCPRSCLKRVLAQAAAEN-LQIKAAFENEFYLLRLTETGLQPADETVFASTLGMDLNWAVINDITDALLQQGIPVERYYPESGPGQHEIAIRYSEALQAADRQIAFRETVRGVALRHQLRASFLPKLFADKAGNGCHLHLSLWRNGENLLP----------------------TAAGD--LSPLARSFVAGILHHLPALMAVTTPSPNSYRRLQPHFWSGAFRCWGIDNREAALRVPTNPQLPSP-THIELKTIDASANPYLALSAVIAAGLDG-------------IRHQLDPGDPVAIDPGNLPDSERQQRRIDRLPVNLGEAIEHLKQDAV--LLTAFQPELAQAFLAVRQAEWTAMQGMTLDAEVQLLLERY 440

[Close]

BLAST of NO02G03600 vs. NCBI_GenBank
Match: PRW21027.1 (ligase [Chlorella sorokiniana])

HSP 1 Score: 260.4 bits (664), Expect = 1.200e-65
Identity = 163/473 (34.46%), Postives = 225/473 (47.57%), Query Frame = 0

Query:   18 PDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLC-SLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVL---------------GSADCQI-----------------TEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKA 458
            P ++Y+ LL+C  +G+R  RV+P              +   +W                LP   D        S +G++RL    P M    +LPW P H    +  L      PW  CPRS L R++ +A+ +HGLT ++G+ELEF L                +A+  +                  +   YS AG F+ AA +L E+C TL+ LG  V+Q+H ESGPGQFE+ L H P + A DGLLFA EA+ AVA +H+   +FLPK     A +G H H S+WR   NL                        +  G   LD     FL G+   LPALM FTTP PNS+RR+ P  W+GA+Q +G  N+E PLRL   +       N E+K  D TANP++A AALI AGL+G             ++  + LPP   +D G L+  ++   GI +LP + AEA A
Sbjct:   11 PSVQYVRLLFCDASGMRRCRVIPRSKLEAVSQQGLGYAWASFW----------------LPAWGDCCISDPAASPVGEMRL---VPDMAATRTLPWMPSH-ATSLATLSYAPGQPWEFCPRSALQRVLAQAQEQHGLTVQLGYELEFYLLHKPDRQQLLDKHAAMAAEAALGRPPGGSIARPPVLPLPFDSHNYSGAGGFEGAATVLSEMCATLTALGSKVDQLHCESGPGQFELALSHAPALQAADGLLFALEAVSAVAAKHELVASFLPKLFNGEAASGRHCHFSVWRGDTNLFAHEAAXXXXXXXXXXXXXXXXXXAVRG---LDPDGEAFLAGVLRHLPALMVFTTPAPNSYRRLAPHCWSGAYQCFGPQNREAPLRL-CSTPGNPAAANCELKTSDGTANPHLAAAALIVAGLLG-------------VRQQLRLPPACALDPGTLTEEQRAAAGIARLPASLAEATA 446

[Close]

BLAST of NO02G03600 vs. NCBI_GenBank
Match: PRW21026.1 (ligase [Chlorella sorokiniana])

HSP 1 Score: 260.4 bits (664), Expect = 1.200e-65
Identity = 163/473 (34.46%), Postives = 225/473 (47.57%), Query Frame = 0

Query:   18 PDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPDDRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNVKDPQMDLC-SLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVL---------------GSADCQI-----------------TEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKA 458
            P ++Y+ LL+C  +G+R  RV+P              +   +W                LP   D        S +G++RL    P M    +LPW P H    +  L      PW  CPRS L R++ +A+ +HGLT ++G+ELEF L                +A+  +                  +   YS AG F+ AA +L E+C TL+ LG  V+Q+H ESGPGQFE+ L H P + A DGLLFA EA+ AVA +H+   +FLPK     A +G H H S+WR   NL                        +  G   LD     FL G+   LPALM FTTP PNS+RR+ P  W+GA+Q +G  N+E PLRL   +       N E+K  D TANP++A AALI AGL+G             ++  + LPP   +D G L+  ++   GI +LP + AEA A
Sbjct:   11 PSVQYVRLLFCDASGMRRCRVIPRSKLEAVSQQGLGYAWASFW----------------LPAWGDCCISDPAASPVGEMRL---VPDMAATRTLPWMPSH-ATSLATLSYAPGQPWEFCPRSALQRVLAQAQEQHGLTVQLGYELEFYLLHKPDRQQLLDKHAAMAAEAALGRPPGGSIARPPVLPLPFDSHNYSGAGGFEGAATVLSEMCATLTALGSKVDQLHCESGPGQFELALSHAPALQAADGLLFALEAVSAVAAKHELVASFLPKLFNGEAASGRHCHFSVWRGDTNLFAHEAAXXXXXXXXXXXXXXXXXXAVRG---LDPDGEAFLAGVLRHLPALMVFTTPAPNSYRRLAPHCWSGAYQCFGPQNREAPLRL-CSTPGNPAAANCELKTSDGTANPHLAAAALIVAGLLG-------------VRQQLRLPPACALDPGTLTEEQRAAAGIARLPASLAEATA 446

[Close]

BLAST of NO02G03600 vs. NCBI_GenBank
Match: WP_068512997.1 (glutamine synthetase [Leptolyngbya sp. O-77] >BAU43811.1 Glutamine synthetase [Leptolyngbya sp. O-77])

HSP 1 Score: 260.0 bits (663), Expect = 1.500e-65
Identity = 155/434 (35.71%), Postives = 232/434 (53.46%), Query Frame = 0

Query:   77 LPCHADIPSRGSGVSSLGDVRLNVKDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELEHGLTFRVGFELEFVLGSAD----CQITEMRTYSSAGAFDDAAPILDELCKTLSELGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRRVNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLKTYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAGAFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISAGLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPKNWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVSLLYDKY 507
            +P   D  +  SG+  +G+  L V D +  L  LP+ P H     +M   +   PWSLCPR  L R++ + E E GL     FE EF L   D        +   +++    D    ++D++   L   G++VE+ + ESGPGQ EI + +   + A D  +  RE +  VA RH  R +FLPK   + AG+GCH+H+SLWR G+N+LP PG   T                      L      F+GG+   LPALM  TTP+PNS+RR+QP++W+GAF+ WG+ N+E  +R+P         T+ E+K  DA+ANPY+A+ A+++AGL G++      +  EP +       P+ VD   L+  E+  R I +LP N  EA AHL +  +T L + LG D+ +A +A R +EW+AL  + L+ EV  L ++Y
Sbjct:   57 VPVMVDGVAADSGLGPVGEAWL-VPDWE-TLTPLPYAPGHARVMADM--QLGEQPWSLCPRGFLKRMLARLEQEAGLRVMAAFEPEFYLLRLDEAGQIHPADRTPFAATLGMDLNQAVIDDITDALIAQGILVERYYPESGPGQHEIAIRYGDALRAADSQIALRETVRGVALRHGLRASFLPKIFADQAGSGCHLHLSLWREGVNVLPDPGRPGT----------------------LSAIALHFIGGILHHLPALMALTTPSPNSYRRLQPQSWSGAFRAWGMDNREAAVRVPSNPHPPSP-THFELKTVDASANPYLALGAVLAAGLDGIQ------QRREPGE-------PVAVDPATLTEAERQSRQIDRLPANLGEAIAHLSA--STVLLDALGPDLARAFLAVRRAEWSALGNLELEAEVQQLLERY 448

The following BLAST results are available for this feature:

BLAST of NO02G03600 vs. NCBI_GenBank

BLAST of NO02G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30243.1	4.900e-173	60.98	glutamine synthetase [Nannochloropsis gaditana]	[more]
WP_070394105.1	7.400e-68	35.44	glutamine synthetase [Moorea producens] >AOX01669....	[more]
WP_009148843.1	9.600e-68	34.69	glutamine synthetase [Moorea producens] >EGJ30859....	[more]
WP_075901696.1	9.600e-68	35.44	glutamine synthetase [Moorea bouillonii] >OLT60976...	[more]
PSC71706.1	6.200e-67	35.37	flug [Micractinium conductrix]	[more]
WP_071105397.1	1.100e-66	34.89	glutamine synthetase [Moorea producens] >AOY82107....	[more]
WP_035998120.1	1.800e-66	34.14	glutamine synthetase [[Leptolyngbya] sp. JSC-1]	[more]
PRW21027.1	1.200e-65	34.46	ligase [Chlorella sorokiniana]	[more]
PRW21026.1	1.200e-65	34.46	ligase [Chlorella sorokiniana]	[more]
WP_068512997.1	1.500e-65	35.71	glutamine synthetase [Leptolyngbya sp. O-77] >BAU4...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007013	NSK007013	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G03600.1	NO02G03600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574772	gene_947	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100003g119	gene358	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G03600.1	NO02G03600.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G03600 ID=NO02G03600|Name=NO02G03600|organism=Nannochloropsis oceanica|type=gene|length=1521bp
ATGCCTGAGCCTCGACTACAACCACATCGCAAACGGGCCCGCGTCGGTCT
CCCCGACATTCGATACATCGATCTGCTGTGGTGCTCTCTCGCTGGCTTGC
GATGCCTGCGCGTTGTACCTGTGTTTGTTGCTGCCGTCGACGGCCCTGAC
GACCGTGATACCTCAAATCTACTTTATTGGCTGCCCGACCCCTGCCCGAC
GGCCTCCTTGTGCCGGGTAGCGCTGACGCTTCCCTGTCATGCAGACATTC
CAAGCCGGGGCAGTGGTGTCTCGTCTTTGGGAGACGTGCGTCTGAATGTG
AAAGATCCTCAAATGGATCTCTGCTCTCTCCCATGGCGACCCCACCACTA
CATGGCACCGGTGGAAATGCTTGATCCCATTTCCGCGATGCCTTGGTCTC
TTTGTCCCCGAAGCTGCCTTGCACGCATTGTCAAGAAAGCAGAGCTTGAG
CATGGTCTGACATTTCGTGTGGGATTTGAGTTGGAGTTCGTGCTGGGTTC
GGCAGATTGTCAAATCACTGAAATGCGCACCTACTCCTCAGCTGGGGCGT
TCGACGACGCGGCCCCTATTCTTGACGAGCTGTGCAAAACTCTGAGTGAG
CTGGGCCTCATCGTGGAACAAATGCACAAAGAAAGCGGACCAGGCCAATT
TGAAATTGTCCTTGGTCACAGACCAGTGATGACAGCAGTCGATGGACTGC
TGTTCGCTCGGGAGGCCATCGTTGCCGTGGCACAGCGGCACCAGCGGCGC
GTCAACTTCTTGCCTAAGTACATGGGTGAACACGCGGGCAACGGTTGCCA
CGTGCACATTAGCCTATGGCGGAATGGGATGAATTTACTGCCACCACCCG
GTCTTACTGAAACCACACCCTCTCTAACCAATTTGGACGACGTGCTCAAG
ACGTATTGTAGTGCTGAGGGAATGTTGTTGCTCGATGAGACGCTTCGTCA
ATTTCTTGGTGGCCTTCATGCCTTGCTGCCCGCGCTTATGTGCTTTACGA
CTCCCACACCCAACTCATTCCGTCGCATCCAGCCACGAGCGTGGGCAGGC
GCCTTTCAAGGATGGGGGATTGGCAACAAGGAAGTACCACTTCGTCTACC
TATTCAATCGTTGGATGAAGGGGTATTTACAAACCTTGAGGTCAAGCTGT
GCGATGCCACGGCCAATCCTTACATTGCTGTCGCCGCGCTAATAAGTGCT
GGTCTGGTAGGCTTGGAATTGGCGGCAATGACCTCAAAGGACGATGAGCC
AATCCAAAACCCTATGCTCCTACCTCCGCCGCTTGAAGTAGATGCAGGAG
AGCTTTCGCTTTTTGAACAGACACGACGTGGTATTCGAAAATTGCCCAAG
AACTGGGCAGAGGCCAAGGCGCACCTAATGAGCCCGGAGGCAACGCGTTT
GAGGGAATTGCTGGGAACGGACATGGTGCAAGCTTGTGTAGCCACCAGGG
AAAGCGAATGGGCGGCGTTGAAGGGAATGACGCTTGACAAGGAAGTTTCA
TTGCTATACGACAAGTATTGA

protein sequence of NO02G03600.1

>NO02G03600.1-protein ID=NO02G03600.1-protein|Name=NO02G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MPEPRLQPHRKRARVGLPDIRYIDLLWCSLAGLRCLRVVPVFVAAVDGPD
DRDTSNLLYWLPDPCPTASLCRVALTLPCHADIPSRGSGVSSLGDVRLNV
KDPQMDLCSLPWRPHHYMAPVEMLDPISAMPWSLCPRSCLARIVKKAELE
HGLTFRVGFELEFVLGSADCQITEMRTYSSAGAFDDAAPILDELCKTLSE
LGLIVEQMHKESGPGQFEIVLGHRPVMTAVDGLLFAREAIVAVAQRHQRR
VNFLPKYMGEHAGNGCHVHISLWRNGMNLLPPPGLTETTPSLTNLDDVLK
TYCSAEGMLLLDETLRQFLGGLHALLPALMCFTTPTPNSFRRIQPRAWAG
AFQGWGIGNKEVPLRLPIQSLDEGVFTNLEVKLCDATANPYIAVAALISA
GLVGLELAAMTSKDDEPIQNPMLLPPPLEVDAGELSLFEQTRRGIRKLPK
NWAEAKAHLMSPEATRLRELLGTDMVQACVATRESEWAALKGMTLDKEVS
LLYDKY*

Synonyms

Publications