NO02G03590, NO02G03590 (gene) Nannochloropsis oceanica

Overview
NameNO02G03590
Unique NameNO02G03590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1641
Alignment locationchr2:961488..963128 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:961488..963128 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G03590 vs. NCBI_GenBank
Match: EWM30313.1 (hypothetical protein Naga_100003g121 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 6.000e-47
Identity = 153/402 (38.06%), Postives = 211/402 (52.49%), Query Frame = 0 
Query:   22 YLVLQLEQLVVQIEEHMNPSLVGHSFIVVVDPPSVQTEGGVDEGELHRTDLDSL-PLGVSAGAMRQGVRQNMSTGEIMHHFPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLEDGKIGRLGQYSVQMQGTXXXXXXXXXXXXXXXFLEQAKELGTFLQAELARLLGYRLVFGVGRTMEEARRNAKGLLLLRS-----KPPGKRHARTEVDHAHTDNHATERTEVQSPAEGEKYKTYARNCKGVLDSK---DEKE------EYGPLSLAEFICQTCKASFFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKTEERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFLCEIGAPPI 409
            +L+L+LE L VQIEEHMNPSL+G +F++V           ++  E   ++ DSL PL  SA A   G+RQNM+ G IM HFP V  V AA+WRS  S  +L+ Y+N+A +GPV+LLRRVV GDGL L+ED   G+ G+YSV +  +                +EQAKELG FL+AEL RLLGYRL FGVGRT+EEARR AKGLL+ R       PP +RH   E   +  D+ A   +      +G++  T+++N +     +   DE+E           S+    C+T  +        +E+ Q         K  T RV    P          +D   KT++    + A  C Q    S  +L   G G + MS IL T T  +++ +FLC + AP I
Sbjct:   23 HLLLKLEHLFVQIEEHMNPSLIGRAFVIV---------DTLEAKEQQESEDDSLTPLDYSAEAFNSGIRQNMTLGFIMRHFPDVALVLAASWRS-RSTSMLQEYQNVANKGPVQLLRRVVEGDGLTLVEDFGDGQFGEYSVALPTSEHDCTRPSYLGE----IEQAKELGGFLRAELKRLLGYRLTFGVGRTLEEARRTAKGLLVFRGDGSMPSPPLRRH--HENSFSGQDHDARPTSHGFFFEDGDESGTFSQNYESSNRQEIRVDEEEIVLGASMNRAWSMRSSKCRTSPSD-------VENAQQASHSGQAQKVSTNRV---APFCSQDTKLRVTDDKMKTQQ---CVEAFKCRQSTAISGHRLRLHGHGTVVMSWILDTFTDASELASFLCSVEAPSI 395
The following BLAST results are available for this feature:
BLAST of NO02G03590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30313.16.000e-4738.06hypothetical protein Naga_100003g121 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007012NSK007012Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03590.1NO02G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574771gene_946Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g121gene357Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03590.1NO02G03590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03590 ID=NO02G03590|Name=NO02G03590|organism=Nannochloropsis oceanica|type=gene|length=1641bp
TATTCGTGCTTGTGTTTTGGGTGAGTGTTTGGTTGTATAGTAGGTGAGTG
CACTATCAATATTACGGGATAGTCGTCAATCGTCCTGTCATGCGACCATG
CACGACTAATAGTCGTCATACCCACCTGAGGAAAGCGAAGAAAAAGCGTG
ACCGCAACCCAAAAGCTCAAGCGGGGTGGACTCGCGTCACGTTGACCTCC
CTGCCTCTACCACAGCTATGATAATCACACCCCGCGCTCATTTCCAACCA
ACCCCACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCG
GCGATGGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACC
AGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCAC
ATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGA
GCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACC
CTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGT
ACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCA
AGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAG
TTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCC
GTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACT
GCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGA
TTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAG
GAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGC
GAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGT
ATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAAT
GCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGC
GAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGA
CCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGC
AACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCC
ATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTA
AGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTC
CAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCC
ATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAAC
GCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCA
ACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAAT
CCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGA
TTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCT
CAAGAAGAACAAGCAAAGAAATAAATTTATTACCACCAGAA
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protein sequence of NO02G03590.1

>NO02G03590.1-protein ID=NO02G03590.1-protein|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MDQPPPPSFINPFALLNDHMAYLVLQLEQLVVQIEEHMNPSLVGHSFIVV
VDPPSVQTEGGVDEGELHRTDLDSLPLGVSAGAMRQGVRQNMSTGEIMHH
FPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLED
GKIGRLGQYSVQMQGTNEEEESESSSSSISVFLEQAKELGTFLQAELARL
LGYRLVFGVGRTMEEARRNAKGLLLLRSKPPGKRHARTEVDHAHTDNHAT
ERTEVQSPAEGEKYKTYARNCKGVLDSKDEKEEYGPLSLAEFICQTCKAS
FFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKT
EERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFL
CEIGAPPIHLPGWPPPPGSQEEQAKK*
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Synonyms
Publications