NO02G03560, NO02G03560 (gene) Nannochloropsis oceanica

Overview
NameNO02G03560
Unique NameNO02G03560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2128
Alignment locationchr2:955326..957453 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:955326..957453 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G03560 vs. NCBI_GenBank
Match: EWM29475.1 (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 4.300e-22
Identity = 128/459 (27.89%), Postives = 190/459 (41.39%), Query Frame = 0
Query:  143 KLTSTFPKDLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGTFEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVK--GGCAVVLIFRLFHVRDGYEPFDLATYEDPTVVWGNV-APAKLFYGNQSAGWMELFPCGRPAMNFTTQMFAEEARRRL----TSFRYNLPRHEALKNVNGNAFVLPVDDNQGLFSNADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPADYDIRYFGISTVDMAGGKPTLDSVADIDIENFYTINGALSWTGRNYSIITGPSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVRYMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDPDWVAGKMKENVATIQYYLCDISAPESQRLTPFGRTLNKRRKDWI 595
            K++++FP+ + YFS  TY   G P  +L D  + P+ G NPY      +T  EG AGT+E+Y+T DG   N    N++  L ++     +AA    +      +VV++ RL+            T E P  VWG V  P   +  +    W EL PC     + TT+     A R++      FRY +   +  +  + +       D+  LF   D N    G++              I G  P T T GL  GPR V    +Y  RY+  +  D+    PT  S+   D+ENFY       W  R Y I+   S DI + CGL     +LFL       L N  P        P   A + R MLA        +   SD +S+E+  + C        GKE      C   D++   + +   ++Q Y CD++       TPF       R+D+I
Sbjct:   56 KISASFPR-VVYFSYETYSLRGHPLTSLPDLRIDPSWGKNPY----REETTEEG-AGTYEIYVTRDG---NKGWPNEVRGLSEDHTNATQAAFSRVMDFVDNLSVVML-RLY------------TTEQPPSVWGGVDRPVISYTDDLGQTWKELQPC-----SDTTRYQFNRAMRQIGWTVYDFRYLIYHSQWYRLRSCHLLSKREADHPALF--PDVNVQLGGNFVMV-----------IEGTAPLTAT-GLFEGPRPVWNVTNYSTRYWSFAAADVFVPGPTYSSLTAQDMENFY----GKGW-DRRYKIVGATSIDIVKACGL-DDPHALFLPYKNE--LMNNNP--------PAVPAVIEREMLARH----MAMGLPSDKQSIEYVTSNC--------GKEN----KCLSIDFMKASLGDQYPSLQVYTCDVATGIK---TPF--VYQPYRRDYI 436          
BLAST of NO02G03560 vs. NCBI_GenBank
Match: XP_005855631.1 (hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526] >EKU20720.1 hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 93.6 bits (231), Expect = 2.300e-15
Identity = 110/461 (23.86%), Postives = 196/461 (42.52%), Query Frame = 0
Query:  137 TSWNHVKLTSTFPKD-LRYFSISTYD-ENGMPSDTLTDYEVL---PTTGTNPYAFRDAHQTLPEGEAGTFEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFRLFHVRDGYEPFDLATYEDPTV------VWGNVAPA-------KLFYGNQSAGWMELFP-CGRPAMNFTTQMFAEEARRRLTSFRYNLPRHEALKNVNGNAFVLPVDDN---QGLFSNADSNYMFAGSYY---EAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPADYDIRYFGISTVDMAGGKPTLDSVADIDIENFYTIN--GALSWTGRNYSIITGPSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVRYMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDPDWVAGKMKENVATIQYYLCD 571
            T  N  ++  +FP++ +RYFS+ + + + G P  T+ DYE+    P    NP+A  D+ + +     GT+ + +T        PR +Q   L   +     +  D   +   AV+L+   F+  D   P  +++  DP        ++G   P        K +  ++S     +FP C +      T + ++     +  F         +++   N FVL + ++    G++ N D+ Y+ A ++    E K +    L+  +TG +P T +  L   P+  +   D D+RY   S++ +  G PT+D++ D     FY        +W  R+YS +   ++D    CGL+ AS+ LFLST     LQ+     D  L     +    R  L  R++  A +  A DA +++                       C DPD++   M++    IQ+Y CD
Sbjct:  165 TEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFA-EDSDRPI-----GTYTINVT--------PRGDQ--GLKNELSLCPESMTDRQCRSVNAVMLM--RFYTSDPDRP-PVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFA------PPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVT-SRNLFTDPKIANY-KDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAW-NRSYSFVA--AEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQL-----IPKTQRTRLPDRSNGYARLQCA-DASALD----------------------ACVDPDYLKNVMEDYYPRIQWYTCD 567          
BLAST of NO02G03560 vs. NCBI_GenBank
Match: EWM30096.1 (hypothetical protein Naga_100193g4 [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 2.300e-15
Identity = 110/461 (23.86%), Postives = 196/461 (42.52%), Query Frame = 0
Query:  137 TSWNHVKLTSTFPKD-LRYFSISTYD-ENGMPSDTLTDYEVL---PTTGTNPYAFRDAHQTLPEGEAGTFEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFRLFHVRDGYEPFDLATYEDPTV------VWGNVAPA-------KLFYGNQSAGWMELFP-CGRPAMNFTTQMFAEEARRRLTSFRYNLPRHEALKNVNGNAFVLPVDDN---QGLFSNADSNYMFAGSYY---EAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPADYDIRYFGISTVDMAGGKPTLDSVADIDIENFYTIN--GALSWTGRNYSIITGPSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVRYMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDPDWVAGKMKENVATIQYYLCD 571
            T  N  ++  +FP++ +RYFS+ + + + G P  T+ DYE+    P    NP+A  D+ + +     GT+ + +T        PR +Q   L   +     +  D   +   AV+L+   F+  D   P  +++  DP        ++G   P        K +  ++S     +FP C +      T + ++     +  F         +++   N FVL + ++    G++ N D+ Y+ A ++    E K +    L+  +TG +P T +  L   P+  +   D D+RY   S++ +  G PT+D++ D     FY        +W  R+YS +   ++D    CGL+ AS+ LFLST     LQ+     D  L     +    R  L  R++  A +  A DA +++                       C DPD++   M++    IQ+Y CD
Sbjct:    5 TEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFA-EDSDRPI-----GTYTINVT--------PRGDQ--GLKNELSLCPESMTDRQCRSVNAVMLM--RFYTSDPDRP-PVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFA------PPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVT-SRNLFTDPKIANY-KDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAW-NRSYSFVA--AEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQL-----IPKTQRTRLPDRSNGYARLQCA-DASALD----------------------ACVDPDYLKNVMEDYYPRIQWYTCD 407          
BLAST of NO02G03560 vs. NCBI_GenBank
Match: EWM26805.1 (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 88.6 bits (218), Expect = 7.300e-14
Identity = 107/460 (23.26%), Postives = 180/460 (39.13%), Query Frame = 0
Query:  130 LPLLPNLTSWNHVKLTSTFPKDLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGTFEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFRLFHVRDGYEPFDLAT--------YEDPTVVWGNVAPAKLFYGNQSAGWMELFPCGRPAMNFTTQMFAEEARRRLTSFRYNLPRHE-ALKNVNGNAFVLP---VDDNQGLFSNADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPADYDIRYFGISTVDMAGGKPTLDSVADIDIENF-YTINGALSWT---GRNYSIITGPSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVRYMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTC-YDPDWVAGKMKENVATIQYYLCDIS 573
            L + PN    +   +   FP D RYFS+ TYDEN  P   L D EV+P+ G N +A +   Q       G F++ ++ DG   N    N+L +   N          +S   G  ++ ++       G +P             Y+DP  +    A   L       GW ++  C        T+        RL    +       +++NV     ++       ++  F NAD  Y+ A +    +      L+  +   +P TP    +   RF+  P  YD+RY  +S  D+    P L +  D +I +F Y + GA  W     RN S++   ++   ++C +   S SL L+         E  +G+   P P + + V R ++      +    A+   K  +  + +   A E + G+      TC  +P   A  MKE+   + +Y C  S
Sbjct:  246 LMVFPNFGPSDLAMIEGEFP-DSRYFSVQTYDENFSPIAGLKDLEVVPSEGVNSFARKSPLQI----RDGRFKIVLSKDG---NRGFPNELPINVGNF---------SSTTTGYVMMRMY-------GVDPLAKTNANKLAKWGYKDPPTISLRTA-GSLTPTTWDQGWKKMPLCPDTNAEIITKAVTTAVNSRLIQMNFKEDSVSCSIENVKDGFMLMSRERASSSRAPFVNADGGYLMACANSRPEYIKNNDLIAVVNTFLPSTPYSKFK--ARFIGSPETYDMRYASLSVYDLRPPGPVLRTFPDAEIRDFYYDLYGAELWEEGFQRNVSMVVASNQAALDRCKV-DTSESLILTLDD----LEEQASGEPTSP-PEWWSIVYRELIPQSQIINGTNAASYGMKEQDIYKTSIQDAREIMCGENGD---TCDRNPYRAASIMKEHYPRVSWYTCSPS 669          
BLAST of NO02G03560 vs. NCBI_GenBank
Match: EWM21339.1 (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 1.200e-11
Identity = 105/415 (25.30%), Postives = 166/415 (40.00%), Query Frame = 0
Query:  100 HTHQPYSAHGSFLLRSRPSPSHCRSWPVCTLPLLPNLTSWNHVKLTSTFPKDLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGTFEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFRLFHVRDGYEPFDLATYED---PTVVWGNV-APAKLFYGNQSAGWMELFPCGRPAMNFTTQMFAEEARRRLTSFRYNLPRHEALKNVNGNAFVL------PVDDNQGLFSNADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPADYDIRYFGISTVDMAGGKPTLDSVADIDIENFYTINGALSWTGRNYSIITGPSKDIAEKCGLFQASRSLFLS-TATPAYLQNEVPTGDLILPLPTYVAYVVRYML 504
            H++    A GS  L+S PSP   +   V               ++   FP  +RYFS + YD +     TL D ++ P++G NP  F D   T  E   GT+E+Y++ DG   +    N++A L  +  +                +L FRL       +  D    ED       WG V  P      +++  W  +  C       T ++         T +  NL   +     N   F L      P+        NA+ NY+F   +   K  G    +  ITG++P TP  GL    R  D  A YD RY   ++ D     P+ +++ D DI N Y+ +   S   R Y+++     ++A+KCGL+  +  + L  T +P +             LP   A V+R++L
Sbjct:  132 HSYFTKDARGS-ALKSSPSPPPHKEEEV--------------YRIRGKFPY-VRYFSFTVYDASLQSISTLHDTDIRPSSGKNP--FNDIEVT--EDNMGTYEIYVSKDG---SKGYPNEMAALRPDSTSP-------------YALLAFRL-------QLLDPRAGEDRSGKNREWGYVDMPLVEILNHRNGEWDIIRRCSDEFQARTEEVIENLDLTFNTWWPKNL---QIGTECNATEFSLFDPEQNPIIRRGVAVRNANENYIF---WCMPKEIGKKDYIIRITGKLPRTPY-GLFDDIRVADT-ARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYSTDPFGSDWDRMYNLVATSDVNLAKKCGLYNRAEDVLLQLTRSPTFTH-----------LPHVPAIVMRHLL 484          
The following BLAST results are available for this feature:
BLAST of NO02G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM29475.14.300e-2227.89hypothetical protein Naga_100128g9 [Nannochloropsi... [more]
XP_005855631.12.300e-1523.86hypothetical protein NGA_0673800 [Nannochloropsis ... [more]
EWM30096.12.300e-1523.86hypothetical protein Naga_100193g4 [Nannochloropsi... [more]
EWM26805.17.300e-1423.26protein of unknown function DUF1214 [Nannochlorops... [more]
EWM21339.11.200e-1125.30hypothetical protein Naga_100075g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03560.1NO02G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03560.1NO02G03560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03560 ID=NO02G03560|Name=NO02G03560|organism=Nannochloropsis oceanica|type=gene|length=2128bp
TTCCTCCTTTGCCCCCTTCCCACTAGGCAAAAAAAGCCCAAGCCCCACCC
TTTgtaagtccccttccctccctccttcttctttcgcacatcactggccc
ctcaccacatagttcccacttatccactttgatccaatacagAGCACAAG
AATTTCTCTCGAGTAGTTGCACATGCGTGTAGCAACGAGCCGCCCCCTCT
GGCTCTTCACGCTGGTGGTGGGCGGTGGGACCGCCGCATTACAACTTCGC
CTCTTCAACAGCACCAGCAGACGCAGCCCACAAGAGCAATACAGGACGGA
CGCTCAATACAAGGCTCGCTTCCTTGTAGAAGAGGATTTTAGACAAGAGC
GACAGCCACTCAACAGTCCAAATTTCCAGAAGGACGTGACTGACTGGCTC
CCTTATCTTCCCAAGGTAAAGCGGTGTATGCAGAAGCAAGCTCACTTTCC
AAATTCTTGCGATCACGGTCACACGCACCAACCTTACAGTGCTCATGGCA
GCTTCTTGCTACGATCCAGACCTTCCCCATCGCACTGCCGGAGTTGGCCT
GTGTGTACCTTACCACTGTTGCCTAACTTGACTTCCTGGAATCATGTCAA
GCTCACGAGTACGTTTCCCAAGGACCTGCGCTATTTCTCCATCTCCACCT
ACGACGAAAATGGCATGCCCTCTGACACTTTGACGGATTACGAGGTGCTG
CCTACAACGGGAACTAATCCGTACGCGTTCCGTGACGCCCACCAGACCCT
GCCGGAAGGAGAGGCGGGCACGTTCGAGGTCTACATCACCTTAGATGGCA
AGGTACCAAACCTTCCCAGAGAGAATCAATTGGCAGTGCTGGGAAAGAAC
GTGGATGCGAAGGATCGTGCCGCCTGCGACACGTCCGTCAAAGGTGGGTG
CGCAGTAGTTCTCATTTTCCGCCTCTTTCACGTTCGGGATGGCTATGAGC
CTTTCGATCTTGCTACCTACGAGGACCCCACAGTGGTATGGGGCAACGTG
GCCCCTGCCAAGCTGTTTTACGGTAATCAATCGGCAGGCTGGATGGAATT
GTTCCCCTGTGGTCGCCCGGCCATGAATTTCACGACGCAAATGTTTGCCG
AGGAGGCGCGCAGAAGGTTGACGTCCTTCCGGTACAACCTACCCCGACAT
GAAGCCCTCAAGAATGTGAACGGCAACGCCTTTGTCCTGCCCGTCGATGA
CAATCAAGGGCTATTTAGCAACGCCGACTCCAATTATATGTTTGCGGGTA
GTTACTACGAGGCCAAGCCCGAGGGGCCGGTATACCTGCTGGGCCACATC
ACAGGGCGTATGCCCTTCACGCCAACCGGTGGGTTGGAGCGTGGGCCTCG
GTTTGTGGACGTACCAGCCGATTATGACATTCGGTACTTTGGCATTTCCA
CAGTGGATATGGCGGGCGGGAAGCCGACATTGGACAGTGTGGCTGATATT
GACATCGAGAACTTTTACACAATAAACGGGGCGTTATCATGGACCGGCCG
TAACTATTCCATCATCACGGGGCCCAGCAAGGACATTGCCGAGAAGTGCG
GATTGTTCCAGGCCTCGAGGAGTTTGTTTTTGTCCACCGCCACGCCTGCC
TACTTGCAAAACGAGGTTCCCACTGGCGACCTCATCCTGCCTTTGCCGAC
CTATGTCGCCTACGTCGTGCGCTACATGCTCGCCTCGCGCAATCACACCG
ATGCTTATATAGACGCAGCTTCTGACGCCAAGTCTGTGGAGTGGACCAGA
AATGCTTGTGTCGCCGCGGATGAGCACATTCAGGGTAAGGAGGAGCACGT
CCATCTTACGTGTTACGACCCGGATTGGGTGGCAGGGAAGATGAAGGAAA
ACGTGGCGACCATCCAATATTACCTGTGCGACATCAGCGCGCCCGAAAGC
CAGCGCTTGACTCCCTTCGGCCGTACACTCAACAAGCGCCGTAAGGACTG
GATCGAAGGTGAAGTAGAGGGGGGGAAAGGATGATAAAAGAAGAGCAAGT
AATACAAATAAATTACAACAACCACTACGAAGAACATAAATGAATGATTG
TGAAACAAAGAGACTGCTTACTCTTCTTCCATTTCTGTGTTTCTTCTTTC
TTCAATTGTCATTGTATAAAAAATAAAC
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protein sequence of NO02G03560.1

>NO02G03560.1-protein ID=NO02G03560.1-protein|Name=NO02G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MRVATSRPLWLFTLVVGGGTAALQLRLFNSTSRRSPQEQYRTDAQYKARF
LVEEDFRQERQPLNSPNFQKDVTDWLPYLPKVKRCMQKQAHFPNSCDHGH
THQPYSAHGSFLLRSRPSPSHCRSWPVCTLPLLPNLTSWNHVKLTSTFPK
DLRYFSISTYDENGMPSDTLTDYEVLPTTGTNPYAFRDAHQTLPEGEAGT
FEVYITLDGKVPNLPRENQLAVLGKNVDAKDRAACDTSVKGGCAVVLIFR
LFHVRDGYEPFDLATYEDPTVVWGNVAPAKLFYGNQSAGWMELFPCGRPA
MNFTTQMFAEEARRRLTSFRYNLPRHEALKNVNGNAFVLPVDDNQGLFSN
ADSNYMFAGSYYEAKPEGPVYLLGHITGRMPFTPTGGLERGPRFVDVPAD
YDIRYFGISTVDMAGGKPTLDSVADIDIENFYTINGALSWTGRNYSIITG
PSKDIAEKCGLFQASRSLFLSTATPAYLQNEVPTGDLILPLPTYVAYVVR
YMLASRNHTDAYIDAASDAKSVEWTRNACVAADEHIQGKEEHVHLTCYDP
DWVAGKMKENVATIQYYLCDISAPESQRLTPFGRTLNKRRKDWIEGEVEG
GKG*
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Synonyms
Publications