NO02G03540, NO02G03540 (gene) Nannochloropsis oceanica

Overview
NameNO02G03540
Unique NameNO02G03540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length974
Alignment locationchr2:948564..949537 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:948564..949537 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
GO:0043248proteasome assembly
Vocabulary: INTERPRO
TermDefinition
IPR032157PAC4
Homology
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_012204814.1 (hypothetical protein SPRG_10368 [Saprolegnia parasitica CBS 223.65] >KDO24553.1 hypothetical protein SPRG_10368 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-8
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   59 DLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLLAALEKRA 155
            D   S+ L + +  CF+WIG A +A  +GSL  A  TPYD  P++++LL    D  + Q +A RL  +T +QVF SC+LP  P     LAA  +RA
Sbjct:   35 DQAFSVQLWLLEHACFVWIGLASDAAALGSLSTAIKTPYDPFPLAASLLGGHGDEAEAQ-IAQRLVLKTKKQVFVSCNLPDDPE----LAAFVERA 125
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_009532810.1 (hypothetical protein PHYSODRAFT_347405 [Phytophthora sojae] >EGZ12477.1 hypothetical protein PHYSODRAFT_347405 [Phytophthora sojae])

HSP 1 Score: 66.6 bits (161), Expect = 8.000e-8
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   72 CCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLP-LLAALEKRAYEVLTE 161
            C F+W+G A + P +GSL  A  T Y  +P+ ++++  AP+ ++ Q +A RLA+RTG+Q F SC L   P H+P L A +EK+  + LTE
Sbjct:   45 CVFVWMGSAADKPRLGSLSTAIATRYSPMPLITSIV-GAPEMEE-QQIAQRLARRTGRQCFVSCQL---PDHVPELFAYVEKQITKRLTE 129
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_022060842.1 (proteasome assembly chaperone 4 [Acanthochromis polyacanthus])

HSP 1 Score: 66.6 bits (161), Expect = 8.000e-8
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 0 
Query:   44 EHMQLYTATERSTEGDLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLL 148
            E + +++ TE+  E   V   H++   G  F+W+   G+AP + +L V+  + YD++P+S+ +L D P N    S+A RLAK+T +QVF+S SLP + ++L LL
Sbjct:   11 EAISVHSFTEKILE--QVVHFHVMKFSGGFFLWV---GSAPVLSNLAVSMSSRYDSMPLSTLVLGD-PSNTAPNSLAQRLAKKTNKQVFASYSLPMTDSNLSLL 108
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: ETI57445.1 (hypothetical protein F443_00264 [Phytophthora parasitica P1569] >ETK97203.1 hypothetical protein L915_00228 [Phytophthora parasitica] >ETO86188.1 hypothetical protein F444_00257 [Phytophthora parasitica P1976] >ETP27223.1 hypothetical protein F441_00253 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-7
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   72 CCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLP-LLAALEKRAYEVLTE 161
            C F+W+G A + P +GSL  A  T Y  +P+ ++++  AP+ ++ Q +A RLA+RTG+Q F SC L   P H+P L A +EK+  + LTE
Sbjct:   44 CIFVWMGSATDKPRLGSLSTAIATRYSPMPLITSIV-GAPEMEE-QQIAQRLARRTGRQCFVSCQL---PDHIPELFAYVEKQINKRLTE 128
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_008889832.1 (hypothetical protein PPTG_00212 [Phytophthora parasitica INRA-310] >ETL50552.1 hypothetical protein L916_00230 [Phytophthora parasitica] >ETM03593.1 hypothetical protein L917_00213 [Phytophthora parasitica] >ETM56871.1 hypothetical protein L914_00229 [Phytophthora parasitica] >ETN23661.1 hypothetical protein PPTG_00212 [Phytophthora parasitica INRA-310] >ETP55187.1 hypothetical protein F442_00247 [Phytophthora parasitica P10297])

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-7
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   72 CCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLP-LLAALEKRAYEVLTE 161
            C F+W+G A + P +GSL  A  T Y  +P+ ++++  AP+ ++ Q +A RLA+RTG+Q F SC L   P H+P L A +EK+  + LTE
Sbjct:   44 CIFVWMGSATDKPRLGSLSTAIATRYSPMPLITSIV-GAPEMEE-QQIAQRLARRTGRQCFVSCQL---PDHIPELFAYVEKQINKRLTE 128
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_023128082.1 (proteasome assembly chaperone 4 [Amphiprion ocellaris])

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-7
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 0 
Query:   44 EHMQLYTATERSTEGDLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLL 148
            E + ++  TE+  E   V   H++   G  F+W+   G+AP + +L V+  + YD++P+S+ +L D P N    S+A RLAK+T +QVF+S SLP + ++L LL
Sbjct:   11 EAISVHNFTEKILE--QVVHFHVMKFSGGFFLWV---GSAPVLSNLAVSMSSRYDSMPLSTLVLGD-PSNTAPNSLAQRLAKKTNKQVFASYSLPMTDSNLSLL 108
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_008613088.1 (hypothetical protein SDRG_08962 [Saprolegnia diclina VS20] >XP_008613089.1 hypothetical protein, variant [Saprolegnia diclina VS20] >EQC33448.1 hypothetical protein SDRG_08962 [Saprolegnia diclina VS20] >EQC33449.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 65.9 bits (159), Expect = 1.400e-7
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 0 
Query:   59 DLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLLAALEKRA 155
            D   ++ L + +  CF+WIG   +A  +GSL  A  TPYD  P++++LL    D  + Q +A RL  +T +QVF SC+LP  P     LAA  +RA
Sbjct:   35 DQAFNVQLWLLEHACFVWIGLTSDAAALGSLSTAIKTPYDPFPLAASLLGGPGDEAEAQ-IAQRLVLKTKKQVFVSCNLPDDPE----LAAFVERA 125
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_015227408.1 (PREDICTED: proteasome assembly chaperone 4 [Cyprinodon variegatus])

HSP 1 Score: 65.1 bits (157), Expect = 2.300e-7
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0 
Query:   61 VASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLL 148
            V   H++  DG  F+W+   G+AP + +L V+  + YD++P+S+ ++ D P N    S+A RLAKRT +QVF S SLP + + L LL
Sbjct:   26 VVHFHVMKLDGGFFLWV---GSAPVLSNLAVSMSSRYDSMPLSTLVMGD-PSNTAANSLAQRLAKRTQKQVFVSYSLPMTDSSLSLL 108
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: XP_004068173.1 (proteasome assembly chaperone 4 [Oryzias latipes])

HSP 1 Score: 63.9 bits (154), Expect = 5.200e-7
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0 
Query:   61 VASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLL 148
            V   H++  DG  F+W+   G+AP + +L V+  + YD++P+S+ ++ D P      S+A RLAKRT +QVF S SLP S + L LL
Sbjct:   22 VVHFHVMKLDGGFFLWV---GSAPVLSNLAVSLNSKYDSMPLSTLVMGD-PSETTASSLAQRLAKRTEKQVFVSYSLPMSDSSLSLL 104
[Close]
BLAST of NO02G03540 vs. NCBI_GenBank
Match: POM75135.1 (Hypothetical protein PHPALM_7804 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 63.5 bits (153), Expect = 6.800e-7
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0 
Query:   70 DGCCFIWIGEAGNAPPMGSLCVATMTPYDNLPVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLP-LLAALEKRAYEVLTE 161
            + C F+W+G A + P +GSL  A  T Y  +P+ ++++  AP+ ++ Q +A RLA+RTG+Q F SC L   P H+P L A +EK+  + L E
Sbjct:   40 NNCIFVWMGSATDKPRLGSLSTAIATRYSPMPLITSIV-GAPEMEE-QQIAQRLARRTGRQCFVSCQL---PDHVPELFAYVEKQITKRLGE 126
The following BLAST results are available for this feature:
BLAST of NO02G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
XP_012204814.12.800e-841.67hypothetical protein SPRG_10368 [Saprolegnia paras... [more]
XP_009532810.18.000e-842.22hypothetical protein PHYSODRAFT_347405 [Phytophtho... [more]
XP_022060842.18.000e-837.50proteasome assembly chaperone 4 [Acanthochromis po... [more]
ETI57445.11.000e-742.22hypothetical protein F443_00264 [Phytophthora para... [more]
XP_008889832.11.000e-742.22hypothetical protein PPTG_00212 [Phytophthora para... [more]
XP_023128082.11.000e-737.50proteasome assembly chaperone 4 [Amphiprion ocella... [more]
XP_008613088.11.400e-739.58hypothetical protein SDRG_08962 [Saprolegnia dicli... [more]
XP_015227408.12.300e-741.38PREDICTED: proteasome assembly chaperone 4 [Cyprin... [more]
XP_004068173.15.200e-741.38proteasome assembly chaperone 4 [Oryzias latipes][more]
POM75135.16.800e-740.22Hypothetical protein PHPALM_7804 [Phytophthora pal... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007010NSK007010Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03540.1NO02G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574735gene_941Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03540.1NO02G03540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03540 ID=NO02G03540|Name=NO02G03540|organism=Nannochloropsis oceanica|type=gene|length=974bp
CAGATGTGGTCTGCCACTTCCAGCTTTTGATTGCTCTCGAACACGGCTTT
GTTTTCCTAGTCTCAATTATTATGTCGGAGCAAATCTAAAAGCTGATTTA
AATGGTGGTGCTGGATTTCCGTAAAAATGACAATTATGGTATGTTACGCA
ATAATGGTCCCGGGGGCCCCACCCCAACAAATGCGATGGGGGGCATTCCG
CAGCTGCAGGACCTCAATTGTTCAGAATAACTTGTTCGTCACCACAGATA
AAACACAGTTACAGGAGCATCTTCATCAAGCCGACAGATGGCTGAGGAGT
CTCCTGTACCCGCGCCGGCGAACCGCATGGCTCCTCCTGCTTCGATGAGT
ACCTCGTCCTCCACCTGCGCATCATCGTCGTTATCGTCATTGGgtaagtc
atcctggcctggtctggcgctccttttatggtttcgattgggtggcggta
ggctacacttcaaaatccttgtaagccacggtttttgcacccctctaaaa
actccccttttcttactccccttccgccctccctacagCCCCACACACCG
CTCCTCCAAGGGAGCATATGCAGCTGTACACGGCGACGGAGCGGAGCACG
GAGGGGGATTTGGTGGCGTCAATGCATCTACTCGTTGGGGACGGGTGCTG
CTTTATCTGGATTGGAGAAGCCGGCAATGCCCCGCCCATGGGCTCGTTAT
GTGTGGCAACCATGACCCCTTATGACAACCTCCCCGTATCCTCCACCCTC
TTGCGGGATGCCCCCGACAATGATCAGTGCCAGTCAATGGCACATCGTTT
GGCGAAGCGGACGGGGCAGCAGGTCTTTAGTAGTTGCAGTCTGCCGGCCT
CCCCCGCCCACTTGCCTCTGCTGGCGGCTTTGGAGAAGCGGGCGTATGAA
GTTTTGACAGAGCCAAATTGATGATATAGGCCTACGCGAAGAAAGAAAAT
GGAGAAGATACTTCCAGCTTTGCG
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protein sequence of NO02G03540.1

>NO02G03540.1-protein ID=NO02G03540.1-protein|Name=NO02G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MAEESPVPAPANRMAPPASMSTSSSTCASSSLSSLAPHTAPPREHMQLYT
ATERSTEGDLVASMHLLVGDGCCFIWIGEAGNAPPMGSLCVATMTPYDNL
PVSSTLLRDAPDNDQCQSMAHRLAKRTGQQVFSSCSLPASPAHLPLLAAL
EKRAYEVLTEPN*
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Synonyms
Publications