NO02G03420, NO02G03420 (gene) Nannochloropsis oceanica

Overview
NameNO02G03420
Unique NameNO02G03420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2453
Alignment locationchr2:917878..920330 -

Link to JBrowse

Properties
Property NameValue
DescriptionOrganic solute transporter Ost-alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:917878..920330 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005178Ostalpha/TMEM184C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G03420 vs. NCBI_GenBank
Match: EWM30294.1 (Organic solute transporter Ost-alpha [Nannochloropsis gaditana])

HSP 1 Score: 397.1 bits (1019), Expect = 5.700e-107
Identity = 207/333 (62.16%), Postives = 259/333 (77.78%), Query Frame = 0 
Query:    8 GGPITPNIIFGILTVLFLILLQKEHASRCYVLPLQKLAARLFILAPTYSIFLLLTGYVTRGKPFWDICMAGLDGYALFSFFGLMVLGAGGEEQVMHRLASDLPQMEGNSTAVNG--AGTNGASGGKLQFSICLCLPMRFNSARSVYTFLKASVMQAMVSRPVFLAASSISKHFAHGQLANLGERGFRLLSLLALIYAVMSIGRTYHLVYQQIWPEFNPVAAFMVVKGFILLVAVQDFVIAMIFSARDPFYEEQSTRAALQAYSLVVSIQAFLFLFIARFYLQPSIFQSYSPQSSLAMTISFCNFMRETYSFWTVFGGDMPPRIDEKTSTRTSS 339
            GG    NI+FGIL V+ ++ +QKEHA RCYVLPLQ+ AARLF LAPTYS F+LLT YVT GKP WD+ MA +DGYAL+ FFGL++LGAGGE +V+ RLA+ LP++E + T VNG  A  +G    KL+FS CLC+ ++F SA+ +YTFL+ SV Q M+SRP+ LAASSI     HG LA++GERGFR+LSLL L+YAVM+IGRTYHL+ QQIWP FNPVAAFMVVKGFILL+ +QDFVIAMIFSARDP Y E+STRAAL  YSLVVSI++ L+L + R +L+P IFQSYS QS  +MTISF  F+ E Y+F  V GGD+P   D+ +S  +++
Sbjct:    6 GGVSALNIVFGILAVVLVLCMQKEHAIRCYVLPLQRNAARLFNLAPTYSFFILLTAYVTSGKPVWDVFMAIVDGYALYCFFGLVILGAGGESRVVTRLAAALPKVEDDLT-VNGAVAQVSGIRNDKLKFSACLCISLQFESAQRIYTFLQLSVKQVMISRPILLAASSICDRLGHGVLASIGERGFRILSLLVLVYAVMTIGRTYHLLRQQIWPAFNPVAAFMVVKGFILLITMQDFVIAMIFSARDPHYVERSTRAALAIYSLVVSIESILYLIVVRQFLKPRIFQSYSTQSFCSMTISFWQFLEEVYTFSNVLGGDLPSMQDKGSSALSTA 337
The following BLAST results are available for this feature:
BLAST of NO02G03420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30294.15.700e-10762.16Organic solute transporter Ost-alpha [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006993NSK006993Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03420.1NO02G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574698gene_931Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g141gene342Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03420.1NO02G03420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03420 ID=NO02G03420|Name=NO02G03420|organism=Nannochloropsis oceanica|type=gene|length=2453bp
GTCGAAACAAAATTGGAAAATGTTGCGTTTCTCCCTCGCCCCCCTGAATG
TACAGTACATGCCAATAGCGTCCTGAATGCGCCATTCCGGCCCCTTTGCA
ATGCCAAATCACATGCGCATGATCAAGCCAAAGCGGACCGTAGCCATGTG
GCCTGTTGCACGGCCATACCCCCCGTGTGCTGGCAATTATCCCCGGGCCA
GATCGTCTGCTTTGACGTACATCCCGTGCACGAGTGCCACAACATATTTA
CTGCTACGAATCCACCCCTTGCAACCACATTGCACAGGCTCAAGACAAAG
TAGAAGCTCGCCTGAGGCACGGCTACTCCTTGAACCGCAGTGCAATCGTT
CTGCGCTTCGACCATGGCCTACTCTGTGGAAAAGGGCGGCCCTATCACCC
CGAACATCATCTTCGGCATCCTTACAGTCCTCTTCTTGATCCTCCTTCAA
AAAGAGCACGCCTCCCGTTGCTATGTTCTGCCCCTACAAAAGCTCGCAGC
CCGTCTCTTCATCCTGGCACCTACGTACAGCATTTTCCTTTTGCTCACTG
GCTACGTCACACGCGGCAAACCCTTCTGGGACATATGTATGGCTGGCTTG
GATGGTTACGCTCTCTTCAGTTTCTTTGGCCTGATGGTACTCGGGGCCGG
AGGTGAGGAGCAAGTCATGCATCGCCTGGCATCGGATTTACCACAAATGG
AGGGGAATTCCACCGCGGTGAATGGGGCCGGCACCAACGGAGCTAGCGGA
GGTAAATTGCAATTTTCCATTTGCTTGTGTTTGCCGATGCGGTTCAATAG
CGCGCGGAGCGTTTATACATTCCTAAAGGCCTCAGTCATGCAGGCGATGG
TCTCACGGCCTGTCTTTCTGGCGGCGAGTTCGATTTCCAAGCATTTCGCC
CACGGACAGCTGGCCAACTTGGGGGAGCGCGGCTTCAGACTGTTAAGTTT
ATTGGCCCTCATTTATGCGGTTATGTCGATTGGAAGGACTTATCATCTAG
TTTATCAGCAGATTTGGCCGGAATTCAACCCCGTTGCTGCATTTATGGTT
GTGAAAGGCTTCATTCTTCTTGTCGCCGTCCAGGACTTCGTCATTGCAAT
GATCTTCTCCGCAAGAGACCCTTTCTATGAGGAACAGAGCACCAGGGCTG
CACTTCAAGCATATAGCCTGGTTGTGTCAATACAAGCCTTCCTCTTCCTC
TTTATCGCGCGGTTTTACCTACAGCCTAGCATATTTCAGAGCTACAGTCC
GCAATCCTCCTTGGCCATGACGATCTCCTTCTGCAACTTCATGAGGGAGA
CGTATTCATTCTGGACCGTTTTCGGCGGGGACATGCCTCCCAGGATTGAC
GAGAAGACATCGACTCGAACATCATCGACGCTCTTATTGCGGAGGGACCT
GGCCGGTGGCTTGGAGATGTCCGGGGGAAACCAGATTGAATAAAAATGAC
ACCTACGTCTGTGACCTGACAAGCATGGTATTGTATAGTAGTCGGTCCAG
CTCAGGTAGACAAGATGATGAACACCTTACATGTGTTTGATATACGAATA
TAGGCACAGATACAGATTATCTCTCAACCGTCTCCTCGTATCGTCATGTC
TCTGTCTCTGCGATGGACGTCTTGTAGACATGAGACGGGGAGTGCGTGCC
ACGTACTGAATAATTTGTCCCCTGCTTTTGTTACATACGTTTTGTCATAT
ATAGCAATAAGGATATCAGTACAAATGAAAATTTGCTATCACAGCTGCTG
TCATCTCGTCCCAGCCGGTCGCTATACTGTTCGTTATTTAACCTATGGGC
ATATACACAAATGAGAAAGCGGACTAGCGTAATATGTGGCAGCCATGTTT
ATCTCGACGTTTTTGAAGAATCCCTCAGCGCACGTACCCTCACCCTCACC
TGCCGGGCCATTGACCGAGCATCATAAGTACATGAATTCATACATACAGT
ATGAACATAAACTTGCACTGACACTCCTCCTAGATCTATCTCCCGTTCAA
ACCCAACGGTTTTCACAGCCGTCGATCCTCCCAGACTTTTTGTCGGGGAA
TGTAAGTAGCTGCTCGAAACGATAAAGAAAAGCGAGGAATGACTATGTTG
ATTTTTGCAGTGTGCTCCACAGTCATCAGGCACCATTTCTGGAGCCACGC
GATTGCTGTGCGTTATTTTTGACATGGTGTAGCTTTTGGTGTGAGGAGGG
ATGCCATATCATACCTTTCCCCAAAGCACAACAGCAGCAGAGACAGCAGC
ACGAGGATTAAGAGGATTGGGGGGAGGAGAAGGAGAAGGAGGAGGAGGAA
CCTCCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTTTCTTCTTCCTT
CTTCATACAAACCATGGTGCGGGAGGAAGTGCAGGTGTCGTTAACGACCA
CTGCAAACGGCCGCAACCGCACCAACAGCATCGACTGTGGTAAAACATCA
AGG
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protein sequence of NO02G03420.1

>NO02G03420.1-protein ID=NO02G03420.1-protein|Name=NO02G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MAYSVEKGGPITPNIIFGILTVLFLILLQKEHASRCYVLPLQKLAARLFI
LAPTYSIFLLLTGYVTRGKPFWDICMAGLDGYALFSFFGLMVLGAGGEEQ
VMHRLASDLPQMEGNSTAVNGAGTNGASGGKLQFSICLCLPMRFNSARSV
YTFLKASVMQAMVSRPVFLAASSISKHFAHGQLANLGERGFRLLSLLALI
YAVMSIGRTYHLVYQQIWPEFNPVAAFMVVKGFILLVAVQDFVIAMIFSA
RDPFYEEQSTRAALQAYSLVVSIQAFLFLFIARFYLQPSIFQSYSPQSSL
AMTISFCNFMRETYSFWTVFGGDMPPRIDEKTSTRTSSTLLLRRDLAGGL
EMSGGNQIE*
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Synonyms
Publications